poc1a (poc1a,LOC107747840)


Basic Information

Item Value
gene id poc1a
gene name poc1a,LOC107747840
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 21443299 ~ 21483333 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313987.1
CTTCCGGTTACGTATTGCGCAGTGGGCGGGGTTTGCTAAGCGGTATACGGCGCGCGTAAAATGAAACGgtttgttgtggttgttgttagCACCTTAGCAACGGAGCTAGCATAGCTTAGCTTAGCATAGCTTAGCTTAATTTAGTATAACTTTAACTGTAATTGGAGAAAATCAGTCCGTATcagtttttaatctttattttatatttttacttcttAAATAAATGAGTTTGGAGAAGTTTATCAGTTTGGATAATAGTAGCTAAGAGATTAGCCGGTTTGCTAACCGTGGCTAGCTCAGGTGACAGTAATGAGCAGGTAGTGTGACGTCATTAACGTTAGCAGCGACGGGGTCATACAGCTCTCTCTTCCTGctttactttcattttatttattttatttactcatttatttatttataactttaaaGAGCTTTCTGTGAAAATGAGCTGCGCGCTGgaggATCCCACACTGGAGAGGAACTTTAAAGGCCACAGAGACACAATAACCAGCGTGGACTTTAACAACAACATGAAACAAATAGctaCAGGCTCGTTGGACTCGTGTGTGATGGTCTGGAACGTGAAGCCTCAGTCGAGGGCGTATCGGTTTGTTGGACATAAAGACAGCGTGATGAGCATCCACTTCTCTCCCTCAGGACAGCTCCTCGCCTCCGCATCCCGCGACCGGACCGTACGCCTCTGGCTGCCCaccgtgagagGTGAGTCGAGTGTGTTTAAAGCTCACACAGGGACGGTGCGCAGCGTGAACTTCTGCAGCGATGGACAGACGCTAGTCACTGCATCAGACGATAAAACGGTGAAGGTCTGGACCGTCCATCGGCAGAAATTCCTCTTCTCCTTCAACCGACACATCAACTGGGTTCGCTGTGCAAAATTTTCTCCAGACGGGAGATTAATCGTCTCCGCGAGCGACGACAAAACGGTGAAGATCTGGGACAAGAACAGCCGAGAGTGTGTTCACTCCTTCTGCGAGCACAGCGGGTACGTGAATTACGCTGATTTCCACCCCAGCGGGACGTGCATCGCTGCTGCCAGTACAGACAACACGGTTAAAGTGTGGGACATTCGCACTCATAAACTCCTGCAGCATTACCAAGTCCACAATGGAGTGGTGAACTGTCTGTCCTTCCACCCGGCCGGTAATCACCTGATCACCGCCTCCACCGACTCCACACTGAAAATCCTCGACCTGCTGGAGGGCCGACTGTTATACACACTGCACGGacaccaggGGCCGGCGTCCTGCGTAGCGTTTTCCAGAACTGGAGATCACTTCGCCTCTGGAGGCTCAgatgaacagGTGATGGTTTGGAAGACGAATTTCGACGCTGCGGGTGACGGCGACGTGCTGAAGAAGCAGAAGATGACTAACGCTCCTGTACAGGCTCCGGAGGTCTCAGACGTGTCTCAGCGCCGCTCCAGTCTGAGCGCTCACTCGTCTCACACACCAGACGCTCGCCATGTCTCCGCCCACACTGAGCCGGACCAATCAGATCACTCTGATCAGTCCGTGTCGGACACGCCCCTCTCTCCTGCACTCACCACAACACTGCAGCACATAGTGGGTCAGCTCGATGTcctcacacagACGGTGGCCATATTGGAACAGAGACTGACTCTGACGGAGGACAAACTGAAGGAATGTGTGGAGAACCAGCGCAAAATCAATCTGCAGCTCCAAACCAGACATCAGTCTGATCTCTAACAGCTCAGTTACACCATTTTCCTCCTTCTCACCTTCTCTCAACCTGctactatttttttatacagtaaaaaaaaacattcttaaaAACATAATGTTCTTCAGATGATTAGCCGCTAGCAGTGAGATGTTTACGTGTTTATGGTGGCAGCAGTGACTTTTATACCAGTTCTGTTTTATCacaacttttatatttttatctgttttacagttttgtgtgtgaactctgtgctgtttgtgtgtttttaaattaaaatttaagtAAG

Function

symbol description
poc1a Predicted to act upstream of or within cell projection organization. Orthologous to human POC1A (POC1 centriolar protein A).

NR:

description
POC1 centriolar protein homolog A-like

GO: NA

KEGG:

id description
K16482 POC1; centriolar protein POC1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313987.1 True 1990 mRNA 0.48 11 21443299 21483333

Neighbor

gene id symbol gene type direction distance location
alas1 alas1 coding upstream 7475 21410776 ~ 21435824 (+)
lrp1aa LOC108281054,LOC108424569 coding upstream 71629 21211252 ~ 21371670 (+)
faim2b LOC108255062 coding upstream 294015 21137809 ~ 21149284 (+)
LOC113537842 LOC108255161 coding upstream 308165 21113434 ~ 21135134 (+)
calcoco1b LOC108255279 coding upstream 396722 21033123 ~ 21046577 (+)
dusp7 dusp7,LOC107697567,LOC107677944 coding downstream 8557 21491890 ~ 21510998 (+)
rpl29 NA coding downstream 59421 21542754 ~ 21545334 (+)
G311946 NA non-coding upstream 52206 21377860 ~ 21391093 (+)
G311665 NA non-coding upstream 251670 21191168 ~ 21191629 (+)
LOC117599907 NA non-coding upstream 258260 21166980 ~ 21185039 (+)
G311652 NA non-coding upstream 278373 21159457 ~ 21164926 (+)
G311972 NA non-coding downstream 1206 21484539 ~ 21484817 (+)
G311977 NA non-coding downstream 31138 21514471 ~ 21523897 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other upstream 560934 20870652 ~ 20882365 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other upstream 582572 20807858 ~ 20860727 (+)
errfi1a errfi1 other upstream 1266027 20119383 ~ 20177272 (+)
si:dkey-264d12.5 LOC108254816 other upstream 1574818 19848467 ~ 19868481 (+)
vamp3 vamp3 other upstream 1659374 19768983 ~ 19783925 (+)

Expression


Co-expression Network