si:ch211-193i15.1 (LOC108254870)


Basic Information

Item Value
gene id si:ch211-193i15.1
gene name LOC108254870
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19883826 ~ 19894420 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313999.1
cacacacacatacttggaCTCAGAAGGATGATCTGCTGTGTGCACATGCTCTCCAAAGGTCACTCTGGATTTTTCAGCTCTAAGGATGGACGGTGTCCTGGAGGCGACGATCGCTCTGTGTGGATGCAAAGTGCTCTGCAGCATTCTGTGTCTTCCTGCTTTCAAAGACTCCATCTCCTCTGTCAGCCTGTGTTGTGTTTCCCTCTTACTCTTCACTGATCTCTCCATCACCAtgttcctggtgTACCTCTGGTCTGCTGCACCCAGACCGATGTCTTTTCACCCGTCTTCAGATGTCATCGCCCTGCGCTTCATGCTGTTCCTTAGCGACACGTATGAGGCTGTGTTGATGCTGACCCCGCTGCTGGTGGCTGTGGAATTGCTGGCTCGTCTCTTATGGGGTGGAGAGACTGTGACAGCAATTACGGATGAAAAAGAAGCTAAAGAGGACACGTTGCTTTTAAAGGACGTTGATGGACATACCTGGGAGACTGGACAACAACagaaaggagaggagaaaggGAACACTGCGGCATTCTTAAAAGCTTTAGGTTTCCTTGGTTGCCTGATGCTATGGTTCATGTGTGGGACATACGCTGGGTCTAGTTGGAGGCAGGAGCAGGTGATGGTGAGATCCTGCCTGGAAAGAGGCAGCTTGCTCTCGACATGCCTCCCCTGCCTCCTCACTGCTTCTTCACCAGTTAGCGGGCAACTATTTTGGGCTCTACCTGCTGCTATTCTCTTGCTAGCATTCACTGCAGTTCTGAGCTTAATCGTAGCAAAGCTGACCCCCAGAATTGTTAATCCAGAGCTGCTCGAACGCACAGAGAACTTTGATGCTCTCAAACAAACGCAAACACATCCACCCACGCCCGAGAGGACCTCTGTTTCTGCTGCGAGCATCTCAGACAATTGCAATGTTGACTCAGAAAAGACAGCGAACAGCTGCGCCATTCACAGCTCGCATAATAAGCGACGATGGGCTCACGGAAAGCCAGAGCCATTATCCTGGAGAACAGAGCTGGCTGACAGCTGTAAATTAAAAAGCGAGAGCGTCACGCTCGTCTTGCAAGTGCACTGCACAGCCCCGCACCCTCACAAGAGCCGGCTTTGGCAGACTGTGAGGGAAAGTCCTTGCCTGAGGGGAGAACTAATGACAGGACTGCTGTGTGGGCTTCTGGTGTGTATCTTTCCTACAGTTCTCAGCACCAACATACTGCTCGTCAGCAACCTGGACACACTGGCTGTGTACGTTGTGAAACATCTGCTCACTCCGCTGCACAGTAAATGAGAGGTTAAGAGGGATGCGTGTTCCCACAGCACACCTCATGCCGAACATTCCTACATTCCAAGGTTATTTGTAAAATTGGAAATCCTGGATGGGTTCAAGCGCACACACGAATGAGCACTGACTGTTTTCTCAACTGATGTATTTTGATCAtgaattcatcttcagtaactgttttctCCTGGTCAGAGTTACTGTGGAACCCGGGAatactgggcacaaggcaggaaatCGTTTAGGTTAGGGGGATATTTAGTTTCGCCAGTTCATATGCTGGCAAGTGAAGGAAACTGGAggaccctgaggaaacccacacggagaACAGTTTATCCGGGTCAGGCTGGTGGTGCTTCCAGAGTCCATCCAAGGAACTCTGCGTGAGAAGCGGGAATACACATTGAATGGGAAGGCCagtacatcacagggcacaatgcacacacacactcacacctagaggcaatttagcatagccaattcacctaccggcatgtttttgggaggaaactggaaaacctggaggaaagccATATGGATACAtaaagaacatgcacagaaactccacacagaaaaTAACCCAAACTCAGGATCGAGCCCCAAActgtggagctgtgagacaaCAATATGTGCACAAGGGCTTTTGCTGGGGATTGTTTATAGTGTGTAGTTCTGATATTGTCTGATTGAGTAGTTATGTTAAACCATGTTCTTTGGATTTGtaatgttcaataaataatgcaAGCCTTTATTAAATGAATAACTGCATGAGTACTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313999.1 True 2059 mRNA 0.49 3 19883826 19894420

Neighbor

gene id symbol gene type direction distance location
si:dkey-264d12.1 LOC108254813 coding upstream 49397 19815906 ~ 19834429 (+)
per3 per3 coding upstream 74505 19787821 ~ 19809321 (+)
LOC113538092 camta1 coding upstream 121574 19535411 ~ 19762252 (+)
cdc42 cdc42,LOC103465423,LOC100691174,LOC101164400,LOC108248645,LOC107083933,LOC103386293,LOC100697482,LOC107395067 coding upstream 519843 19349748 ~ 19363983 (+)
c20h1orf50 c21h1orf50,cunh1orf50,zgc:112255,LOC105895900,LOC107654415,LOC107654365,LOC107565729 coding upstream 540763 19337932 ~ 19343063 (+)
mmel1 mmel1,LOC107712974,LOC107654428,LOC107756657,LOC107702001,LOC107592889 coding downstream 109985 20004405 ~ 20022989 (+)
slc45a1 slc45a1,LOC107654425 coding downstream 146919 20041339 ~ 20053146 (+)
pax7a pax7,pax7a,LOC108255053,LOC103136430 coding downstream 285488 20179908 ~ 20237403 (+)
park7 park7,LOC107657982,LOC107701995 coding downstream 384152 20278572 ~ 20288754 (+)
kcnab2a kcnab2a,kcnab2,LOC106513833,LOC108431628,LOC108255041,LOC100709904,LOC107385277,LOC108231619,LOC103136366,LOC106923773,LOC102294726,LOC103385628,LOC107712982,LOC107657983,LOC107582417,LOC107592856 coding downstream 394574 20288994 ~ 20385659 (+)
LOC117599874 NA non-coding upstream 35542 19839421 ~ 19848284 (+)
G310880 NA non-coding upstream 47262 19835679 ~ 19836564 (+)
G310882 NA non-coding upstream 72091 19811438 ~ 19811735 (+)
G310870 NA non-coding upstream 166497 19717081 ~ 19717329 (+)
G310828 NA non-coding upstream 322436 19561183 ~ 19561390 (+)
G310905 NA non-coding downstream 5458 19899878 ~ 19905766 (+)
G311204 NA non-coding downstream 66681 19961101 ~ 19961315 (+)
G311207 NA non-coding downstream 68094 19962514 ~ 19963668 (+)
G311225 NA non-coding downstream 101644 19996064 ~ 19996270 (+)
G311220 NA non-coding downstream 133476 20027896 ~ 20028312 (+)
si:dkey-264d12.5 LOC108254816 other upstream 15345 19848467 ~ 19868481 (+)
vamp3 vamp3 other upstream 99901 19768983 ~ 19783925 (+)
phf13 phf13 other upstream 366648 19508189 ~ 19517178 (+)
svbp NA other upstream 385155 19494758 ~ 19498671 (+)
G310681 LOC108254836 other upstream 796020 19087025 ~ 19087806 (+)
errfi1a errfi1 other downstream 224963 20119383 ~ 20177272 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other downstream 913438 20807858 ~ 20860727 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other downstream 976232 20870652 ~ 20882365 (+)

Expression


Co-expression Network