nuf2 (nuf2)


Basic Information

Item Value
gene id nuf2
gene name nuf2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13617009 ~ 13628791 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314043.1
GGAAAAGCGGAAAAGGAGGCAGGTAAACACAAGCgtgtaatgttaaaaaataatatagctTAAGGCTTTAActgctattttattatttttaaaatggcgAAAGAGAATTTTGAAAAAGATGgagCCATGATGGAGAATACGTTTCCAATATACAAGGTGGACGCCATCGTGCAGTTTTTTCGAACTGAAGTCTTGACAGGACAAGAGGCGAAACATTTTGCAAAAAGTGATGTTACTCCTAATCCAAAGGCGGATGTCATCCAGAGACTGTACATGAGAATACTGCAGCTTGTGTATCGCTTCAGGCCTGAGTGCCATTACCTGGCACCTCTGTCAGAAAATCTCCAATACCCAATGTTACATGAGTGGTCCACACCAGTCTTGAGTCTCTATGTATGCATgtgCCAGTTTTTGCCAGTGTGCCATGTGTATGACTTTTCACTGAATGACCTGCTTAATCCTAAGCCCAAAAGAACAATCACTATTTTGAGTGGAATCCAAAATTTCCTGCACTTTAGGAAACAGAGGTTGGAAATAATTGCAGGCCATCAGCAGGCTTTTCGTGCAGATATGGATAAACTTCAGTATTGCACAAAAGGCATTAAGGAAGCTGAAAAGAAGATAGAGAAACTGATGACAATCCCACCAGAGCAGCAAGCAGAGGCTAAAGAACTGGCTGCAGCCCTCACAGAAGTGAAAAATGCTACCATGCAAGAAACCCAGGAAGTGAATGCCCTTAATGAACAGGTTGCAGAGTGCAAAAGAGAAATCGCAGAACGGTCACAGAAACTGAGCCAGAGGAAGCTAGATGTGGCCACTCACAAAGACGAAATAGCCAAACTTAAGTCTCAGATTGTTGAGTCTCCTGAGGAGCTCAAGAATGAGATGGAGAAGATGAAGGAGAGCATAAAGAATATCAAGATCTCAAAAGAGCTGGCAGATGAGACGCTGGTGGAGCTGCAGATTAAGGTGCAGTGTGCTAGCCAAGGAGAAGCAGAGATTCAAGTAATACTGAAACAGCTGCATGACCTGCAGGCCAGCATGTGCAAGACTAACCAACAGAAGGAAGAGGTCCAGAATCTGGTGGCTCTCTACGAGTCCCTGCAGAAGGAGCTAAAGGGCCTGAGCAATGAAGAGGGCCAGCTAAAGAGAGGTCTCGCCATGAAACAAGACAAACAGTCCAAGCAGCAGATTCGTCATCAGAAAAAGAAGGAGCTCAAGGACCAGCATGTCCAAAATATACTTGGGCAATATGACAAAGTTCATGAAAAACGTGAGGAAATCGTGGATCGGATAAAAACCATCACCCGAGAGACCACGCAGTTCAAGGCAAAAATGCAGAAGCTCCGAGATACCTGCAACCAGAACAGTGAAAAAGCTCAGgCCATCTACGACCGGCTGCTCACCACACTGGAGCAGTACCACAAACGTCTTGAAAATCTAGTGATGGAGGGCAGTGCTGACATCATGAAGATGAAAACTAATTTCTAAACCACTTTTGGCAAATGGTCTTTTGTCTCTGTACCTTTTTCAAATGTTTGTCATATgtaaatttttgtcttttgccaggaataaaattaaataaactgtcACTTTTGGTA
>XM_034314044.1
ACAGTATCCGCCGTAGAAGACCTCTGAGCGGAAGTGACGACAGAACCGCTGAAAGTTTAAATTTGACAACGGAAAAGCGGAAAAGGAGGCAGgagCCATGATGGAGAATACGTTTCCAATATACAAGGTGGACGCCATCGTGCAGTTTTTTCGAACTGAAGTCTTGACAGGACAAGAGGCGAAACATTTTGCAAAAAGTGATGTTACTCCTAATCCAAAGGCGGATGTCATCCAGAGACTGTACATGAGAATACTGCAGCTTGTGTATCGCTTCAGGCCTGAGTGCCATTACCTGGCACCTCTGTCAGAAAATCTCCAATACCCAATGTTACATGAGTGGTCCACACCAGTCTTGAGTCTCTATGTATGCATgtgCCAGTTTTTGCCAGTGTGCCATGTGTATGACTTTTCACTGAATGACCTGCTTAATCCTAAGCCCAAAAGAACAATCACTATTTTGAGTGGAATCCAAAATTTCCTGCACTTTAGGAAACAGAGGTTGGAAATAATTGCAGGCCATCAGCAGGCTTTTCGTGCAGATATGGATAAACTTCAGTATTGCACAAAAGGCATTAAGGAAGCTGAAAAGAAGATAGAGAAACTGATGACAATCCCACCAGAGCAGCAAGCAGAGGCTAAAGAACTGGCTGCAGCCCTCACAGAAGTGAAAAATGCTACCATGCAAGAAACCCAGGAAGTGAATGCCCTTAATGAACAGGTTGCAGAGTGCAAAAGAGAAATCGCAGAACGGTCACAGAAACTGAGCCAGAGGAAGCTAGATGTGGCCACTCACAAAGACGAAATAGCCAAACTTAAGTCTCAGATTGTTGAGTCTCCTGAGGAGCTCAAGAATGAGATGGAGAAGATGAAGGAGAGCATAAAGAATATCAAGATCTCAAAAGAGCTGGCAGATGAGACGCTGGTGGAGCTGCAGATTAAGGTGCAGTGTGCTAGCCAAGGAGAAGCAGAGATTCAAGTAATACTGAAACAGCTGCATGACCTGCAGGCCAGCATGTGCAAGACTAACCAACAGAAGGAAGAGGTCCAGAATCTGGTGGCTCTCTACGAGTCCCTGCAGAAGGAGCTAAAGGGCCTGAGCAATGAAGAGGGCCAGCTAAAGAGAGGTCTCGCCATGAAACAAGACAAACAGTCCAAGCAGCAGATTCGTCATCAGAAAAAGAAGGAGCTCAAGGACCAGCATGTCCAAAATATACTTGGGCAATATGACAAAGTTCATGAAAAACGTGAGGAAATCGTGGATCGGATAAAAACCATCACCCGAGAGACCACGCAGTTCAAGGCAAAAATGCAGAAGCTCCGAGATACCTGCAACCAGAACAGTGAAAAAGCTCAGgCCATCTACGACCGGCTGCTCACCACACTGGAGCAGTACCACAAACGTCTTGAAAATCTAGTGATGGAGGGCAGTGCTGACATCATGAAGATGAAAACTAATTTCTAAACCACTTTTGGCAAATGGTCTTTTGTCTCTGTACCTTTTTCAAATGTTTGTCATATgtaaatttttgtcttttgccaggaataaaattaaataaactgtcACTTTTGGTA
>XM_034314045.1
CGACAGAACCGCTGAAAGTTTAAATTTGACAACGGAAAAGCGGAAAAGGAGgagCCATGATGGAGAATACGTTTCCAATATACAAGGTGGACGCCATCGTGCAGTTTTTTCGAACTGAAGTCTTGACAGGACAAGAGGCGAAACATTTTGCAAAAAGTGATGTTACTCCTAATCCAAAGGCGGATGTCATCCAGAGACTGTACATGAGAATACTGCAGCTTGTGTATCGCTTCAGGCCTGAGTGCCATTACCTGGCACCTCTGTCAGAAAATCTCCAATACCCAATGTTACATGAGTGGTCCACACCAGTCTTGAGTCTCTATGTATGCATgtgCCAGTTTTTGCCAGTGTGCCATGTGTATGACTTTTCACTGAATGACCTGCTTAATCCTAAGCCCAAAAGAACAATCACTATTTTGAGTGGAATCCAAAATTTCCTGCACTTTAGGAAACAGAGGTTGGAAATAATTGCAGGCCATCAGCAGGCTTTTCGTGCAGATATGGATAAACTTCAGTATTGCACAAAAGGCATTAAGGAAGCTGAAAAGAAGATAGAGAAACTGATGACAATCCCACCAGAGCAGCAAGCAGAGGCTAAAGAACTGGCTGCAGCCCTCACAGAAGTGAAAAATGCTACCATGCAAGAAACCCAGGAAGTGAATGCCCTTAATGAACAGGTTGCAGAGTGCAAAAGAGAAATCGCAGAACGGTCACAGAAACTGAGCCAGAGGAAGCTAGATGTGGCCACTCACAAAGACGAAATAGCCAAACTTAAGTCTCAGATTGTTGAGTCTCCTGAGGAGCTCAAGAATGAGATGGAGAAGATGAAGGAGAGCATAAAGAATATCAAGATCTCAAAAGAGCTGGCAGATGAGACGCTGGTGGAGCTGCAGATTAAGGTGCAGTGTGCTAGCCAAGGAGAAGCAGAGATTCAAGTAATACTGAAACAGCTGCATGACCTGCAGGCCAGCATGTGCAAGACTAACCAACAGAAGGAAGAGGTCCAGAATCTGGTGGCTCTCTACGAGTCCCTGCAGAAGGAGCTAAAGGGCCTGAGCAATGAAGAGGGCCAGCTAAAGAGAGGTCTCGCCATGAAACAAGACAAACAGTCCAAGCAGCAGATTCGTCATCAGAAAAAGAAGGAGCTCAAGGACCAGCATGTCCAAAATATACTTGGGCAATATGACAAAGTTCATGAAAAACGTGAGGAAATCGTGGATCGGATAAAAACCATCACCCGAGAGACCACGCAGTTCAAGGCAAAAATGCAGAAGCTCCGAGATACCTGCAACCAGAACAGTGAAAAAGCTCAGgCCATCTACGACCGGCTGCTCACCACACTGGAGCAGTACCACAAACGTCTTGAAAATCTAGTGATGGAGGGCAGTGCTGACATCATGAAGATGAAAACTAATTTCTAAACCACTTTTGGCAAATGGTCTTTTGTCTCTGTACCTTTTTCAAATGTTTGTCATATgtaaatttttgtcttttgccaggaataaaattaaataaactgtcACTTTTGGTA

Function

symbol description
nuf2 Acts upstream of or within heart development. Predicted to be located in kinetochore and nucleus. Predicted to be part of Ndc80 complex. Is expressed in proliferative region. Human ortholog(s) of this gene implicated in castration-resistant prostate carcinoma and pancreatic cancer. Orthologous to human NUF2 (NUF2 component of NDC80 kinetochore complex).

NR:

description
kinetochore protein Nuf2

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0000777 condensed chromosome kinetochore cellular_component
GO:0031262 Ndc80 complex cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K11548 NUF2, CDCA1; kinetochore protein Nuf2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314043.1 True 1601 mRNA 0.43 14 13617079 13628791
XM_034314044.1 False 1572 mRNA 0.45 14 13617009 13628791
XM_034314045.1 False 1531 mRNA 0.44 14 13617046 13628791

Neighbor

gene id symbol gene type direction distance location
zgc:77375 LOC108254961,LOC108431553,LOC107700631,LOC107758152 coding upstream 10558 13589033 ~ 13606451 (+)
isy1 isy1,LOC108254962,LOC108431508,LOC107700632 coding upstream 30038 13579360 ~ 13586971 (+)
LOC113537916 LOC108254963 coding upstream 38650 13569089 ~ 13578359 (+)
cnbpb cnbp,cnbpb,LOC108254964,LOC108431552,LOC106566283,LOC105905103,LOC107742027 coding upstream 48048 13565069 ~ 13568961 (+)
mkrn2 mkrn2 coding upstream 95597 13508409 ~ 13521412 (+)
si:dkey-42i9.6 NA coding downstream 3314 13632105 ~ 13649265 (+)
si:dkey-42i9.4 LOC108254831,LOC108269908,LOC108431510,LOC108281067 coding downstream 40629 13669420 ~ 13671305 (+)
ecm2 ecm2,LOC107658384,LOC107586919 coding downstream 76930 13705721 ~ 13721720 (+)
aspn aspn coding downstream 97069 13725860 ~ 13733282 (+)
omd omd coding downstream 116213 13745004 ~ 13748733 (+)
G307161 NA non-coding upstream 92955 13522009 ~ 13524054 (+)
G307154 NA non-coding upstream 115178 13501466 ~ 13501831 (+)
G307079 NA non-coding upstream 266329 13350453 ~ 13350680 (+)
G306959 NA non-coding upstream 282764 13331687 ~ 13334245 (+)
LOC117599900 NA non-coding downstream 311635 13940426 ~ 13960190 (+)
G307272 NA non-coding downstream 374817 14003608 ~ 14003831 (+)
G307262 pdhb,LOC107721006 non-coding downstream 386371 14015162 ~ 14016394 (+)
G307293 rpp14,LOC103374991 non-coding downstream 423044 14051835 ~ 14058202 (+)
G307281 NA non-coding downstream 467479 14096270 ~ 14096786 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 1154473 12457601 ~ 12462536 (+)
G306103 NA other upstream 2101196 11515059 ~ 11515813 (+)
G305955 iqsec1 other upstream 2135909 11480669 ~ 11481100 (+)
G305869 NA other upstream 2290649 11325604 ~ 11326360 (+)
G305863 iqsec1,iqsec1b other upstream 2301573 11314184 ~ 11315436 (+)
ippk ippk,LOC107755999,LOC106566243 other downstream 45563 13674354 ~ 13692912 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 550992 14179783 ~ 14476817 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other downstream 885801 14514592 ~ 14524976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 2128099 15756890 ~ 15799890 (+)
amigo3 amigo3 other downstream 2860570 16489361 ~ 16501684 (+)

Expression


Co-expression Network