LOC113539691


Basic Information

Item Value
gene id LOC113539691
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 6310692 ~ 6313470 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314072.1
GTTTGTGGTGGTGTAAGTAAACTAGTAAAAAGAGTACAAATGTTGTGGCAAGAAAAGGAAACATGTTTTATGGTAATGGTAGTACTGATGCTGATCTCCTCAGCATTTTGTCTTGAGATAGCTCCTCAGGGtaaatcagttcagtttggtAGACTTCTTATTGGTTCTAGCAAGACTACAAATGAAACCAAGGATGGTGTTGTCAAGAAGGTGTATGATGAATACGCTGGAGACACCAATGGCTATCAATCTGATCAGCCTGAGTTGACTGAAGGGTCCCAACTGGCCAAGTTAATATTCAGGCGCTGGAGTCCCTCAGTGCAGTGTGAGAAGGATTCAATGACCCTGCGTATTCAGGGACGTCGAGTACCCAACTTCTTGATTGAGACAAGTGAAAGGGGCCCAGTACCACTATCACTAATGCCTTCCCACTGTGGCTTTTCTGTGAAGAGGGCCCGCAGAGATGTTGCGCTCGTTGCCAACTATGATGGCTGTAATGTTGCACAGCAGGGGAATACCTACATCCTGCCACTGCGTGTTTTGGGAGTTGCGGTGAAGATGGCCTGTCCCGTGACTCGTCCTCTCACTACAGTCTCCTGTAGTCCTTCAGCTATGGTTGCCAATCTTGGCCAGTCTACAGATGCTGTCAGGCTGAAGGTGAATGGTGTGTGGCAACCGGTGTACCAAGCTTCCACTACATGTGGATTTACCTTGGAAGTTGTGGGAGGTGGACTGACTCTCACTGCACCATATACAAGCAACTGCTGGAAGTTTGAGGGTGCCGAGATGCTTTTGTCTGTGCAATACATGGATGGGGAGGTGACCTTGTCCTGTTCAGCTGTTCAGACCCCAGCTACAACTGCTTTACCTGCTGACATGCAGCCTGGAACTCTCTCAGATGCCTCCCTGACTACTACAGATGCACCAGCCACTGATCAACAGCTTTTGTATTCTTGGTTACCTGGAATGTATTATCCTTACGGCATGCCATGGTATTTCCAATATAGCCAGCCTGGATCTCCCCCAGTTACCCATACTACAACAGCGCCAACTACTCCAGCTACCACAGTTGCTCCAGCCAGTGATCATCAGCTTTTGTATTCTTGGTTACCTGGAATGTATTATCCTTATGGCATGCCATGGTATTTCCACTATAGCCAGCCTGGATCTCCTTTAGTTACCCCCACAACCCCAACAACTACCCCAGCTACCACAGTTGCACCCAGCCATTCTGATCAACTGCTTTTGTATCCTTGGTTTCCTGGAATGCATAATCATTATGTTACTATGGCTTCCCCTGGTGTCCCAGCATCTGGCCCCAATAGTGGGGATAAATTGCAGATGTACCAGAGGCCCTGGGTGAATGCCTTTCCTAATTACTTCACTTTAAATCAAAAGCCAGGCTCCCTAATGGTTAACCCATCCAAAGGTGTGTCATATCCTGCCCATTTTTCTCCACTACAGGTTAAAGCAGGTCCAGGAAAATGAGCAACTCTTGACTCTGGTTCACAAATGAAGGTGgtgaaacaataaagaaaaatctaaatGGTGTGGTGGTCATGTTTTTCTAGTTTGAGTATAAATCTGTTACTATGGTGATATTTAGAGTGGTTCCCACGTTTGTACTTTATGCTGGTTAACTATATGATGTCCTGACATTGGCCTAGGTATTGTATCTCTTTGACCCTATTGTCTATTCTTTCCTGttacaaacattttccaaatCACTGTGTTAATTGCTGGTCCAATATGGAATGATCAGAATTG
>XM_034314073.1
GTTTGTGGTGGTGTAAGTAAACTAGTAAAAAGAGTACAAATGTTGTGGCAAGAAAAGGAAACATGTTTTATGGTAATGGTAGTACTGATGCTGATCTCCTCAGCATTTTGTCTTGAGATAGCTCCTCAGGGtaaatcagttcagtttggtAGACTTCTTATTGGTTCTAGCAAGACTACAAATGAAACCAAGGATGGTGTTGTCAAGAAGGTGTATGATGAATACGCTGGAGACACCAATGGCTATCAATCTGATCAGCCTGAGTTGACTGGGTCCCAACTGGCCAAGTTAATATTCAGGCGCTGGAGTCCCTCAGTGCAGTGTGAGAAGGATTCAATGACCCTGCGTATTCAGGGACGTCGAGTACCCAACTTCTTGATTGAGACAAGTGAAAGGGGCCCAGTACCACTATCACTAATGCCTTCCCACTGTGGCTTTTCTGTGAAGAGGGCCCGCAGAGATGTTGCGCTCGTTGCCAACTATGATGGCTGTAATGTTGCACAGCAGGGGAATACCTACATCCTGCCACTGCGTGTTTTGGGAGTTGCGGTGAAGATGGCCTGTCCCGTGACTCGTCCTCTCACTACAGTCTCCTGTAGTCCTTCAGCTATGGTTGCCAATCTTGGCCAGTCTACAGATGCTGTCAGGCTGAAGGTGAATGGTGTGTGGCAACCGGTGTACCAAGCTTCCACTACATGTGGATTTACCTTGGAAGTTGTGGGAGGTGGACTGACTCTCACTGCACCATATACAAGCAACTGCTGGAAGTTTGAGGGTGCCGAGATGCTTTTGTCTGTGCAATACATGGATGGGGAGGTGACCTTGTCCTGTTCAGCTGTTCAGACCCCAGCTACAACTGCTTTACCTGCTGACATGCAGCCTGGAACTCTCTCAGATGCCTCCCTGACTACTACAGATGCACCAGCCACTGATCAACAGCTTTTGTATTCTTGGTTACCTGGAATGTATTATCCTTACGGCATGCCATGGTATTTCCAATATAGCCAGCCTGGATCTCCCCCAGTTACCCATACTACAACAGCGCCAACTACTCCAGCTACCACAGTTGCTCCAGCCAGTGATCATCAGCTTTTGTATTCTTGGTTACCTGGAATGTATTATCCTTATGGCATGCCATGGTATTTCCACTATAGCCAGCCTGGATCTCCTTTAGTTACCCCCACAACCCCAACAACTACCCCAGCTACCACAGTTGCACCCAGCCATTCTGATCAACTGCTTTTGTATCCTTGGTTTCCTGGAATGCATAATCATTATGTTACTATGGCTTCCCCTGGTGTCCCAGCATCTGGCCCCAATAGTGGGGATAAATTGCAGATGTACCAGAGGCCCTGGGTGAATGCCTTTCCTAATTACTTCACTTTAAATCAAAAGCCAGGCTCCCTAATGGTTAACCCATCCAAAGGTGTGTCATATCCTGCCCATTTTTCTCCACTACAGGTTAAAGCAGGTCCAGGAAAATGAGCAACTCTTGACTCTGGTTCACAAATGAAGGTGgtgaaacaataaagaaaaatctaaatGGTGTGGTGGTCATGTTTTTCTAGTTTGAGTATAAATCTGTTACTATGGTGATATTTAGAGTGGTTCCCACGTTTGTACTTTATGCTGGTTAACTATATGATGTCCTGACATTGGCCTAGGTATTGTATCTCTTTGACCCTATTGTCTATTCTTTCCTGttacaaacattttccaaatCACTGTGTTAATTGCTGGTCCAATATGGAATGATCAGAATTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314072.1 True 1767 mRNA 0.46 7 6310692 6313470
XM_034314073.1 False 1764 mRNA 0.46 7 6310692 6313470

Neighbor

gene id symbol gene type direction distance location
LOC113539620 NA coding upstream 1996 6305677 ~ 6308696 (+)
ncoa3 ncoa3,LOC108255004,LOC108436109,LOC107717960 coding upstream 112309 6160790 ~ 6198383 (+)
LOC113539546 NA coding upstream 206633 6099010 ~ 6104059 (+)
LOC113539543 NA coding upstream 220655 6084440 ~ 6090037 (+)
LOC113539542 NA coding upstream 230886 6073558 ~ 6079806 (+)
LOC113539617 tmcc1b,LOC108255160,LOC108436190,LOC107746889,LOC107656050,LOC107755185,LOC107696833 coding downstream 5405 6318875 ~ 6334112 (+)
dnajc16l LOC108255153,LOC108436218 coding downstream 22214 6335684 ~ 6345255 (+)
LOC113539438 LOC108281051 coding downstream 43982 6357452 ~ 6363685 (+)
si:dkey-33m11.6 NA coding downstream 52586 6366056 ~ 6368120 (+)
ddx19 ddx19,LOC108255077,LOC107680447,LOC108411521,LOC107699345,LOC107572851,LOC107556002,LOC107714482 coding downstream 62965 6376435 ~ 6384403 (+)
G302585 NA non-coding upstream 729713 5577633 ~ 5580979 (+)
G302575 NA non-coding upstream 745678 5522534 ~ 5565014 (+)
G302586 NA non-coding upstream 749168 5560613 ~ 5561524 (+)
G302530 NA non-coding upstream 1093267 5175570 ~ 5217425 (+)
LOC117599916 NA non-coding upstream 1432317 4837152 ~ 4878375 (+)
G303181 NA non-coding downstream 36722 6350192 ~ 6351096 (+)
G303404 NA non-coding downstream 322387 6635857 ~ 6659338 (+)
G303437 NA non-coding downstream 477848 6791318 ~ 6793226 (+)
G303645 LOC108281052 non-coding downstream 554248 6867718 ~ 6870772 (+)
G303658 fmod non-coding downstream 585020 6898490 ~ 6900530 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other upstream 16943 6200446 ~ 6293749 (+)
ptprga ptprg,LOC107752167,LOC106583020 other upstream 839131 5210644 ~ 5471561 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other upstream 1841496 4451040 ~ 4469196 (+)
cadpsa cadps other upstream 2032019 4158232 ~ 4278673 (+)
LOC113539463 adamts9 other upstream 2397606 3850561 ~ 3913086 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other downstream 184590 6498060 ~ 6502636 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other downstream 350498 6663968 ~ 6779358 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other downstream 1661121 7974591 ~ 8026929 (+)
nfasca nfasc other downstream 2167625 8481095 ~ 8561702 (+)
shisa4 shisa4,LOC108254774,LOC107552307 other downstream 3222655 9536125 ~ 9551761 (+)

Expression


Co-expression Network