magi1b (magi1,magi1b,LOC107728617)


Basic Information

Item Value
gene id magi1b
gene name magi1,magi1b,LOC107728617
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 3623893 ~ 3802333 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314105.1
GTTACTACAGccggcgcgcgcgcgcgcgcacacacacacacgccaagagCCGCACGCAGCGTTACTAACAAAAACAAGCGGAGGACGTCGTACCTGCTTAAAGGAGCCGTGAGCCGCGGTACGACAGCGCGTTAACcggggaggggaaaaaaaaccgaGCTGGAAACGAATAAAGAGTTTTGGGACTTTTTAGTGGAGGGAAATAACTTGTGgaattaaaagaagaagaagaggaagaagaggaagatttGTCGTGCGCGAGGCGTTCTGACGTTAATGAGGATtgaggaggaagatgaggaagatgagAAAGCGGATGTAAATTAGAAACAGCTGGTGAAGTCCCGGGGTTTCATTCAAGTTCACTACCGGATAAAGGATGGCttgaggtttcttttttttaaaattattattattatttttttaattttttggaaGTTAAcacaggcgctgatgttgggaagAGCGCTGAAGAAACTTTACCGCGTCTGAAACACACCTGTTTCCTGAGAGACCCGTGTCCTCTGTCCCCTCTGTCCTCTGTCTCCTCACCATGTCCAAAGCGATGCAGAAAAAGAACCACTGGAGCGCGAGAGTGAGCGAGTGCGCGGTGCGGCGGGACGCGCGCGGGGACATAAACGTGCCGCTGCAGGGCGGAGCGGAGAACGGAGAGTTCGTGTACGTGGGCCGCGTGGATCCCGGCTCCATCAGCTACGACCACGGCACTCTGACCGAGGGAGAGCTGCTGCTGGAGGTGGACACGCTGCCCGTGTCGGGATTACCGCTGTACGACGTGCTGAGCGCCGTGAAGATCAAAGGACCCGTTAGACTCAAAACCGTACGCCAAGGAAATAAGCTGAATAAGGACCTCAAACACTATCTGAGCCAGAGGTTTCAGAAATCTTCAGAAGACCACAAGCTCCAGCAGACCATACGGGACAACCTCTACCGCCATGCTGTGCCTTGTACGACCCGCCTTCCTCGAGACGGAGAGGTTCCCGGAGTCGATTATAACTTCCTCTCGGTGGAGGACTTCCTGAAGCTCGAGCAGAGCGGGACACTTCTGGAGATCGGCTCTTACGAAGGTAACTACTATGGAACACCCAAACCATCGAGCCAGCCCCCCGCTGCTAAAGTGATTGGCGGAGAGGCGTCGCCCAACGACAGGCCCGGCCCCCAGGAGACCACGCCCCGCCGCTCCAAGTCCTACAATGAGATGCAGAATGCTGGAATAGCCCCCGCCGACACAGAGGATGAGGACGAGCTTCCTGAAATGAACAGCAGcttcacagGAGACTCGAGTGAACCGGACGAGCACCCCTCTGTCCGCCCCTTCGCCCCGTCTCACCGGTTCAACAGCGCACCGACGGCAGCCACGGAGAGCacgcagaacacacacacacaccccagccACCCCACGGACGAGGACCCCCTGGGCCCTCTACCTGAAAACTGGGAGATGGCTTACACCGAGAACGGCGAGGTCTACTTCATAGACCACAACACAAAGACCACGTCATGGATCGACCCTCGGTGCCTGGACAAGCCCCAGAAACTGGAGGAGTGTGACGATGACGAAGGGGTTCATACTGAGGAACTGGACAATGATCTAGAGTTGCCCACCGGCTGGGAAAGGATCGACGATCCCGTGTACGGGGTTTATTACGTGGAtcacaTCAACAGAAAGACGCAGTATGAGAATCCCATACTAGAAGCTAAGAGGAAGAAGCAGTTGGAGCAGTCGCAGCCTGCAGAAGAGTGGATAGAAGAGAACGCTTCAAGAGCACCGCTAGCCAGCTACGCCACCATGCACCAGGAGATGCACAGAAGCCCCGAGCCTCCTTTTCCCCCAGTAGGGGCCAAACggGTGAAGCCTTTCTTCACACGGAATCCGGCCGAGCTGAAGGGAACGTTCATTAACACTAAGCTGAAGAAGAGCCGCCGTGGTTTTGGTTTCACGGTGGTCGGGGGAGACGAGCCGGATGAGTTCCTCCAGATTAAGAGTCTGGTGCTGGACGGCCCGGCCGCTCTGGACGGCAAGATGGAGACAGGTGACGTAATCGTCAGCGTAAACGACACTTGCGTCCTGGGCTACACGCACGCACAGGTGGTAAAGATCTTCCAGTCCATTCCTATCGGTTCCATGGTGGACCTAGAGCTTTGCCGAGGCTACCCGCTGCCCTTTGACCCTGACGATCCCAACACCAGCCTGGTGACCTCGGTGGCTATCGTGGACAAAGAGCCTATCATCGTCAATGGCCAAGAAAGCTACGACTCGCCATCCAGCCACGGCAGCCATAACGGCACTGCCAGCGAACCCCCTCGCCCCTTAAGCCCCGCCCACGAGCCCACCCCCGATGGTTCACAGGAGCAGCGTTTCGCCGGCGATGCCGTGACCCTGGCGTCGTCCATCGCCACGCAGCCAGAGCTGATCACGGTGCACATGGAGAAAGGAGACAAGGGCTTTGGCTTCACCATCGCAGACAGCCCAGGAGGTGGCGGCCAGCGTGTCAAGCAGATCGTGGATTACCCACGATGCCGAGGGCTCAGGGAAGGTGATATCATCGTGGAGGTGAACAAGAGGAATGTGCAGAATCTTACTCACAACCAGGTGGTGGATCTGCTCAGCAAGTGCCCTAAAGGCAGCGAAGTCACCATGCTGGTCCAGAGAGgggtgGCTCCTGCCAAGAAAAGCCCAAAACTGCAACCGCTGGAGAGAAAAGACAGCCAGGGTAGCCACCGCAGTGTTCCCTCAGACTCGCCTCTCCACTCCTCGCAGGCTCCATCCACAGAGACGGCGGCTCCGCCTCCCCCCGCCCAGCCGCTGCCCGGCCTGCCCCCTCAGGAGCCGGCAACAGACGGCACGCTCGCCAAGAAACCGGACCCGTTCAAAATTTGGGCCCAGTCCAGGAGCATGTATGAAAGTAGGCTGCCAGATTACCAGGAGCAGGATATCTTTCTGTGGAGGAAGGATACAGGCTTCGGTTTCCGGATCCTCGGAGGGAATGAACCAGGAgagccaATTTACATTGGCCACATTGTGAAGTATGGCGCTGCAGACGAAGACGGGCGTCTGCGCTCTGGAGACGAGCTGATCTGCGTGGACGGGACGGCTGTGGTGGGCAAATCCCATCAGCTTGTGGTACAGCTCATGCAGCAGGCAGCCAAGCAAGGCCACGTCAACCTGACTGTCAGACGCAAGACAGGATATGGAGTTGCGAAGGTGGAAGGTGAGGTTCCTCCGTCTCCGGCCTCGTCCCATCACAGCAGTACCCAGGCCGCATCTCTGACCGAGGACAAGCGCACGCCTCAGGGCAGCCAGAACTCTCTGAACACGGTCAGCTCGGGCTCTGGCTCCACCAGCGGCATCGGCAGCGGTGGCGGTGGCGGTGGCGGAGGCAACAGCAGCGTGGTGCCCAGTGCAATCCAGCCATATGACGTTGAGATCCGGCGTGGAGAGAACGAGGGCTTCGGTTTTGTCATCGTCTCGTCTGTCTCCAGACCCGACGCGGGGACGACATTCGCTGGAAACACATGTGTGGCCATGCCTCATAAAATAGGGAGGATCATCGAGGGCAGTCCGGCAGACCGCTGCGGGAAGCTGAAGGTGGGAGATCGCATCCTCGCCGTCAATGGCTGCTCCATCACCAACAAGTCCCACTCGGACATCGTCAACCTCATCAAAGAGGCGGGAAACACGGTCACGCTGCGCATCATTCCAGGAGACGAATCCTCAAACGCAGCGCTGCTGACGAACGCCGAGAAGATCGCCACCatcactaccacacacacacctcaacagcAAGCTGCACCTGAGCCAAGAAACAACAGCAAACCAAAACAGGAGTCTTTCGAGTTCAAAGCGCCTCAGGTTCCTCCTCCGCCAGCCCCCACACAAGCTACAAACCAGgagggGGAGCTGTACTCAGTGGACCTGGAGAGAGACAGTAAAGGCTTTGGCTTCAGTCTGCGTGGAGGACGCGAGTACAACATGGACCTGTACGTGCTGAGACTGGCCGAAGACGGAGCAGCAGTGCGCAGCGGCAAGATGAGGgtaGGAGATGAGATTTTGGAGATTAATGGAGAGAGCACCAAAGGCATGAAGCACACCCGTGCCATCGAGCTGATCAAGAGCGGAGGCCGGACAGCGCACCTCGTGCTGAAGCGCGGTGATGGCTCTGTACCCGAATATGGTGGGTCCATCTACGAAAACATCCCTTTCTCGCCAGTCTTCACACCATGACAGACCACCaactctcctctcttctccccCGCACACGTGCCAGCCCTCTCTGTCATGATCTCCTGCTATTTGGTGATGGGCCTCTTCATGTTGCCTTTGGCCTTCTCTTTGCATCTGTGCAGGGGACACTGGGAAATAATTCCATGGGCACatgcttaaaaaagaaaaagaaaaaagtggcaGGCCATAGAaagatttatttctaaaagtaTAACTGGATTTATTACTTCTCAGAGGCCTCAAGGAGTTGTAGGTTTTTATGCTGATAAGTACCCAAAAATGCAAACTTAACGTCTGGAGTCAGTGTGGTGTAAGTAACATATTTATGCTATTTATTGAAGGTGAATGTACGCTACTGAGAAGACTTTAAGAGACTATGAAAGCATCCTTGTACCCTCTCCACCACGATACTGTAGTAGAGCTGTTCACGGATTTTGCCACGCATAGTCAACGTCCAAAGACGCTTCAGTAAATCCACTCGCTCTCACTGTTCATTAGGATTCGTCAGGTCATGTGATTTCAATCCAGCCATAATGTCTGTTGCTGCATGACGTCttcagtaaaaaatatttttccataatatttatggaagacTAGTCGTAACTGTTATCTCAATTGCCAGTGATTTCAtgcattctttctttccatGTATTTTGTCAAGTTCcgaatgtgacttttttttttcgcaaATGATctctttgtatatttttgtaccattttttctacttttttcttttatgttcaTCCACATGTTGCCACTTTGTTTGCAGTGTACATTGCATTATttgccgtgtgtgtgtatgttgcacATTGTCTATGGGGCTTGGGTCTATCTGTTTGCTGCTGGGTTGGTGTATATGGTGTTTTGGGTGTCCTGGATCTCTCTATcctattaatgtttatttttcactcaaTGGTGGGGGCATTTTATGGACAATCTCTCtttgaacaaaataaacacattttccatTGCAAAAATCa

Function

symbol description
magi1b Predicted to enable molecular adaptor activity. Predicted to be involved in signal transduction. Predicted to be located in bicellular tight junction and membrane. Predicted to be active in cell-cell junction and cytoplasm. Is expressed in blastoderm. Orthologous to human MAGI1 (membrane associated guanylate kinase, WW and PDZ domain containing 1).
magi1 Enables alpha-actinin binding activity. Involved in positive regulation of cell-cell adhesion. Located in several cellular components, including cell-cell junction; nuclear lumen; and plasma membrane.

NR:

description
membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1-like

GO: NA

KEGG:

id description
K05631 AIP3, WWP3, BAIAP1; atrophin-1 interacting protein 3 (BAI1-associated protein 1)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314105.1 True 5224 mRNA 0.54 24 3623893 3802333

Neighbor

gene id symbol gene type direction distance location
lrig1 lrig1 coding upstream 64246 3519749 ~ 3559647 (+)
suclg2 suclg2,LOC107729402,LOC107753779,LOC107699794 coding upstream 238479 3288732 ~ 3385414 (+)
tafa4b fam19a4,fam19a2,LOC107655986,LOC107558879,LOC104966247,LOC108231490 coding upstream 610201 2965364 ~ 3013692 (+)
eogt eogt,LOC107729408 coding upstream 665188 2941857 ~ 2958705 (+)
tmf1 tmf1,LOC107729398,LOC107600287 coding upstream 682627 2925133 ~ 2941266 (+)
prickle2b prickle2,LOC107590162,LOC107739290,LOC107728631,LOC107656034,LOC107551119 coding downstream 113253 3915586 ~ 4011768 (+)
psmd6 psmd6 coding downstream 235439 4037772 ~ 4042092 (+)
thoc7 thoc7,LOC107696849,LOC107739288,LOC107551027,LOC107728626 coding downstream 278103 4080436 ~ 4085015 (+)
fezf2 fezf2 coding downstream 487239 4289572 ~ 4292368 (+)
fgd5a LOC108255103,LOC108435806 coding downstream 531832 4334165 ~ 4380659 (+)
G301506 NA non-coding upstream 93534 3521792 ~ 3530359 (+)
G301487 NA non-coding upstream 170388 3452671 ~ 3453505 (+)
LOC113539486 NA non-coding upstream 563047 3028940 ~ 3060846 (+)
G300775 rab7a,LOC103385930,LOC101061812,LOC107385713,LOC107385419,LOC106582926,LOC108254780 non-coding upstream 715839 2906708 ~ 2908054 (+)
G300843 NA non-coding upstream 886985 2736478 ~ 2736908 (+)
G301792 NA non-coding downstream 115997 3918330 ~ 3918531 (+)
G301805 NA non-coding downstream 130774 3933107 ~ 3933350 (+)
G301852 NA non-coding downstream 226676 4029009 ~ 4029270 (+)
G301857 NA non-coding downstream 240757 4043090 ~ 4043866 (+)
G301881 NA non-coding downstream 329947 4132280 ~ 4210261 (+)
LOC113539549 LOC108254930 other upstream 900312 2715662 ~ 2723581 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other upstream 1434976 2141522 ~ 2188917 (+)
mon1a mon1a other upstream 1563252 2053083 ~ 2060641 (+)
LOC117599925 NA other upstream 2124721 1496860 ~ 1499172 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other upstream 2129248 1448442 ~ 1494645 (+)
LOC113539463 adamts9 other downstream 48228 3850561 ~ 3913086 (+)
cadpsa cadps other downstream 355899 4158232 ~ 4278673 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other downstream 648707 4451040 ~ 4469196 (+)
ptprga ptprg,LOC107752167,LOC106583020 other downstream 1408311 5210644 ~ 5471561 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other downstream 2398113 6200446 ~ 6293749 (+)

Expression


Co-expression Network