ankrd52b (ankrd52,LOC108255001)


Basic Information

Item Value
gene id ankrd52b
gene name ankrd52,LOC108255001
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20546892 ~ 20576360 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314145.1
tgtgctgatgaagGAGTTTGAGCTTTACTGattctggagagagagagagagagagagagagagatggggattttaaacatcacacagcagACCCCATTAGTCCAGGCGATATTCAGCCGAAATGTAGAAGAGGTGAAGTTTTTATTGCACAAGAAAGAAGATGTCAATGCACTGgaCCAAGATCTTCGTTCCCCTCTGCATGCTGCTGCTTTTTTGGGTGATGTTCGCATCATGGACCTTCTCGTCAAGTCAGGTGCTCGTGTTAACGCTAAGGACCAAGCGGGTCTGACTCCACTGCATCGAGCCGCAGCTTCCAGGAACGACAGGGCAGTGGTGTTGCTGCTGAGTCAGGGGTCAGAGGTCGAGTCCAGGAGTCGGCTCGGCGGTCAGACGCCGCTGCACGTGGCCGCCTCGAACCGGGCGCTGAGGTGCGCTGAAGCTCTGCTGCCTTTCATGAGCAGCGTGGATGTCGCGGATCAGAACGGAAGAACGGCTCTGCACCACGCAGCCTACAGCGGAGACACGGAGATGGTGACGTTGCTCCTGAGCAAAGGCGCCGACCCGAGTGTGAGGGATAATCAGCAGCGACAGCCTCTGCACTGGGCCGCTTACCTCGGATGTTTGGAGATCGTGAAGCTCTTGCTGTCTTGCGGTGCTGATGTGGCGTGCAGAGATAAACAGGGTTACACGCCTCTCCACGTAGCTGCTATCAGCGGCCACGTCGACGTCGTCAAGCACCTGCTTCGCCTCGGCGCTGAGATGGACGAGGCGAATGCGTTTGGGAACACGTCTCTGCACATGGCGTGTTATAACGGACAGGAGGCTGTGGCTAACGAGCTAGTGAACCGCGGCGCTAACGTTAACCAGGCTAACGCCAGAGGCTTCACTCCGCTTCACCTGGCCGCCGTGTCCACGAACGGAGCGCTGTGTCTCGAGCTGCTCGTCAACAACGGCGCCGACATCAACATGCAGaCTAAGGAGGGGAAAAGCCCTTTGCACATGGCCGCCGTTCACGGTCGCTTCACTCGATCCCAGATCCTCATTCAAAATGgtggGGATATAGACTGTGTAGATAAATATGGCAATACTCCTCTTCACATTGCTGCTAAGCACGGCCATGAGCTGCTCATCAGCACGCTGATGACTAACGGTGCTGACAcggccagacaggGGATTCATGGGATGTTTCCGCTGCACTTGGCCGTGCTCTACGGGTTTTCAGATTGCTGTCGAAAGTTACTCTCCTCAGgtcaGCTGTACAGTATTGTTTCGTCGTTGAGTAACGAACACGTCCTGTCTGCGGGGTTCGATATAAACACCCCGGACAGTCTGGGGAGGACCTGTTTACACGCTGCTGCCTCGGGAGGAAACGTGGAATGTCTAAACTTGCTCTTGAGCAGCGGTGCTGACTTGACCAAGGCGGACATCATGGGAAGAACTCCTCTGCACTACGCAGCAGCTAACGGGACGTACCAGTGCACCGTAGCGCTAGTGAGCTCCGGAGCCGAGGTGAACGAGCTCGACCTGAACGGCTGCAGCCCTCTGCACTACGCTGCTGCCTCACACACCTTCCGCAGAGTCGACGCCGATGATCTTCAGAGCGATATGCGAGATAAAGAGGCCCTGCTgtgtttgGAGTATCTGCTGGATAACGGAGCTGATCCAGGACTCAGAGACACTAAAGGCTTCAGTCCTGTTCACTATGCAGCCGCCTACGGCAACAAACACAACCTGGAGCTGCTCTTAGAAATGTCCTTTAACTGTTTGGGAGACGTGGAGAGCAGTTTTCCTGTGAGCCCTTTGCACTTAGCTGTGTGTAACGGTCACTGTGAGGCGGTGCAGCTCCTCTCCGAGACGCTGGTGTGTGTGGACGTCCGGGACGGCGCAGGACACACTCCTCTGTATCTGGCTGCTCGGAAAGGCTCCGTGTCTTGCGTGGAGGTTCTTCTGTCGCACGGAGCTTCGTGCTGCATCCGAGAGCACGCCGGAAAACGGACACCGCTTCACGGAGCCGCTGCCAGAGGACACACTGACTGTTTGTACGCGCTGTTGAGCCGAGCGGACAGAGATGACCTCATCGACCTCGCAGACGCACAGGGGCAGACGGCTCTGATGTTGACCACGCTGGGCGGTCATGTCGACTGCATGCACATGCTACTCGAGAGAGGAAGTAAACCTGACACAGGGGACAGACGCAGTCGCACAGCActacacagagtggtggcgCTGGGCAGTGTGGAGTGCGTCTCTGCGTTGTTAGATCACTCGGCCTCGCCGCTGTGTCGGGACGTTCGGGGGCGGAGCTCTCTGCACTTCGCTGCCTCGTGTGGTCACGCCGAGCTCCTGCAGCTCCTCCTCAGCGCCGCGGCTCAGTCCGACCCGCTGGACTCTCTACTGGACTACAGCAGATACACACCTGCTCACTGGGCTGCTTACCAcgGACACAAGGACTGTTTGGAAATTTTACTTGAATATAAACCATTAAGTATCCAGGAAGGGAATGCCTTCACCCCGCTGCACTGTGCACTAATGAAAGGCCACGATGCTGCTGCTGAGCTGCTGGTGAAGATGATGGGCATCGAAATCATCAACCTCAGAGACGCCaaaggaagAACTCCACTGCATGCAGCTGCCTGGTCAGAGAAAGTGTCCGGGTTGCAGCTGGCTCTGTTCTGGGGGTCAGAGGTCAACTCGGTGGATTATGAAGGGCGTTCGGCTCTGATGGTGGCTGCTGAGAACGGCCAAACGTCTGCTGTCGaagTCCTCCTCCAGCAAGCCAAAGCAGACCTGTCACTGCTGgacatcaacaacaacacagCACTACACCTGGCCTGCAGCAGAAGTCATGAGATGTGTGCGCTGCTGATTCTGGCTGAGATCGACGATCCTTCCCTCATCAACGCTACAAACAGTGCACTACAGATGCCGCTCCACATCGCGGCGAGGAATGGTCTGGCCACCGTGGTGGAGGTGCTCCTGAGTCGAGGTGCTACAGTACTGGCTGTAGATGAAGAAGGTCGCACCCCGGCGTTGGCGTGCGCTCCGAACAAAGACGTGGCCGAGTGTCTGGCGCTGATCCTCTCCACCATGAAGCCTTTTCCTCTTAAAGACGCCGGCATCAGCGTGTTAAAGCACTGCAGCATTGCTGCCAACCATCATCCTTTACCAAACGGCTACGCCAAGGAGCGCCACGGCACCGTAGGGCTCGacagctgagacacacacacacacctttctcacACCTGTATAACCACAGCCTCTATAACCTACAGCCATGTTAGAAAGCCAGGAATgtaccactgtgtgtgtgtgtgggggggtaaATTTCAGTTAACAGACCTGCGCATATGCAAATATTCACTCCTTTTCACCTCGgcacatttaatttaatctttttttttttttttttttttatgggatggatggatgcaagAAACTGTGATACATAcacctgtcttttttttttttttacctgagatGGAAGAATGAGAGTTGTCTACACATTTCTACAAACACAACAATTCTGAAGTCGCAGCCATCACTAGCTGTAGCACTAGCTGTGAGTCTCTCCGTTACGTCACCTGCATCACATCAGACtttcatctaaaaaaaattaagcaattaaaaaacaTAGCAAGGCAAAAGTCTGGTGTGAGGACTAGCGAACAATTAGACATACCATAGCTCCGccctcttgttttctattggctcatgCATCCGAGATTTGCATATTTAGATGTTTTGATAAGCTTGACATAAAGCaaacttgttaaaaaaacaaaaacaaactggtAACGGAAGAAAATTCCCACTGAAGTCACATTTTCTCCAGGAAAACTTGTTCCGTTTGACGTCTGATTGAGATGCTGATAGCTGCGACTTCAGAAGGTTAATGactgtttaattgtttttttttatttcctgaatATCTCCAGACGTTTTAGCGATGTCCAGTGCCTCTGCTAATAACGAGTGTGTCCTTACTGTCCCTTACACtcttttttaacctttttaattaatttaaatgttaatctCCTGCAATTTTCCTAATGAAATGAGAGGAAAACatcaacgcacacacacacacttactcacacacactcacactcaactGTTCATCAGGTTCAAATGGcctcattctttatttatttacttattaatgccatggtttgcactttttttttcctccaggaGATACCGGGAGTGTTTGTGAAGTAGGGCTGGCCCGAACACCATTTTTATGATTACGTTTGTTACTGCAGTTCAAAATATATCCAGTAGGGGGCGTATATGACGTATtaatagtgtatatacagtatatgtgatagcacaaattaaatgaaatcacACCAAgagatatttattataatttctttttattattgcaCAAACCAGATCAATAACATGAGCCTAAACAAATAACAAGTGCGTCCGATGGTCCGATGGTCCGATGGTGCGATGTGTAAAGTGTTGTTTAACTAAAAACATATCAATAAACATCTGTTTACTTTCAGCAAACTTTAAAATATCCTACGGTATGAGAGTCGTACATTTCAGTAGCTGTGCAACAGTGACAGTTTTTCCGATAAGTTTTTCTCTCCCCCATGTCGTGTTTTCCGTCCTACGGCTTTTTAAAGCAATAATACATTTGATTTggtttaaaacatattttatttgtcatttttgtttgtattagaTTAACTGAGATTCAGGGATACATATCAACACACTCGTATTGACGTCTGGCGTCTTTGAGCAGTAGTTATACTTCTAATTAAGGCTAACTAGAGAAACTAATACCGTAAAAACGTAACGAGCGAATACTCGAGTGTTAGATTATTCGGGCCAGCCCTGGTGTGAAGGTTTTCCGTCACTCGTGACTTGCTAATACGAGACactaagtgatttttgtgtttcaGGATCGCTGCTATAATTACGCTGCCTTCgttgatttctgtttttttttgttttaattttgtttgtttgtttatgagcAATAATCGTCCAAGTGATTACACATTACCTCGTATTTCTGAACAGCTTTTCTGAATATTGGATCAGAAAAACTGGAATATTTGCACAGAGAAAACGTTTGCACACGGCAGCAGTCAAGTGtttataaaaacaagaaaaatcgtgaaattaataaagtgtgtgtgctgtagttCTGTAACAGAAGTGTTACCAACATTAGTAAagagaaggtaaaaaaaaaaaaaacagagtttgACCACAGAAGCCCGAGCGCATGTCTGACTCCACGCAAACGGCATAAAAGATAACTCTTCTGCGATCTTCAGAGGAATGAGCTTACTCAAAGGTATTTATTTTCTGCTTAAACACCACCGCAatgatgtgtgtttataaagtcCTGCCTTTTAGTCTTTAAGCATCAACTGCAACAAGCCTTGACCGgtgactgttacacacacacacacacacacacactcacactcactcgcTTATCTATTCACTCAGCCACCAATGCTGGAAGGAGGCTCAGGATAAACTCTGTAAAAAAGCAGTAGCCCTAATGAGGCTTTGTGGGAAAACTCTTCCCTATGATCAGGGAGGTTGCAGGTTCAAATCCTGCCTTGGGTCTCTGTTTCTCTAGTTTTTGACTGTTTAGCAAtgataaatatacaaataacaaGTGCGTCCGATGGTTCATTGCATTGAACCTGCAATGAAAGCCTTAGCCATGTCAGCaccagcagctgtgtgtgtaagtaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgttgatgATGCTTGGGGTTTGAGGCCCAGGTGGTGGTACAAATCCTGCATGAAGAACCGCAGAGCTTTTACAGATCTGGATTAATTTTCATTTAGTGTAGTAAAAACTAGCAATAGTGTAATGtagtataataatagtaaataaaatgaaatatagtagtgatagttaattaaaaaaaaaagaaagtaatagATTATAAAATGACTATTGTTGTATGGTCCAGAGTAGCATAACCCCTCCTTTCGCCAATGCAGCAGAGAACCCCTGTATGAGCCATAACACGAACTACTGGAAGCAGGTTCAGGATAAACTCTGTAAAAACACACTGCAGTCCCCATGTGGCTTTGTGGGAAAGCTCTTGCCTCCCATTGGTGAGGTTGCAGGTTCAAATCCTGCCTTGgctctcttcttctctgccTTTTGACAATTTAGCAATgctaaatatacaaaatatacaaacactTGAGCCAGCAGCAGCTTAGTGTGttagtaagagtgtgtgtatgtaagtgtgtggtATTGACTCTTGGGGTTCAAGGCTCCGCTGGGGCGAAAAGCAAGGCCTTGAGCCTGCATGAAGGAACTCTGGGGTTATATAAATCTGGATTAAATTTTAATTAGTGTAGTAAAAACTAATAGTGTAACATAGTATAATATTAGTAAATGAGATAGTAGTGATAGTTAATTAACAAATGAaagtataaaattattattttatggtCCAGAGTAGCATAACCCCTCCTTTCACCTCCCCCAGAGCCCCAGGTGGGAGCATccagactttctctctctttccttctcactGCTGGATTTATTGCCCCACCTGGTTCCAGCACCTCAGGCTCACCTGCAGGCAGTCTCGAGCTCGAGCCTTTACACCCTGCAGTGATGCTCAGCCCTCACCTCCAGACCCCTGAGCCACTGGTGCCTTCACACAACAGCccttttttttgggggtttgtCTTTCGCTTTACACCGCTTACACGCAATGACGtgtgtttagaaagaaaacacCGCCTGGGCCAAGGTTTGAACCATGAccctcacacacagcacacacaaacacaccaacctGCCCACTGAACCACCAGAGCAGACAGGCTCTGCTGGAACCTTCAACATCTGTGGTGTGATGTTACAGGTTTCACACTCGCTTTAGGAAACACTCCCAGGTTGCTGCTGAGCTACacctgaaaatatttttaaatatatatatatatatataacaacacTGCAGCAGCATGATGGTGTAGTGGGTAGTGCGGGCATCTTCTCACAGCTCCTGTGTCCCTGGTTTGGTCCTGAGCtcctgttactgtgtgtgtatcaaacaaacaaaaaaaaaccccaagaTTTCTTTATTAATGTATCTCAAATACGATGAGTTACTGCAAGACTTAAACCATGTGCAGAGACTTCGGCATGAACGAAGCTTGTGgcttatttaattttgttaaattcacacacatacttttgtatattttatttggcAGGAAGTCACCTGGGTAGGCAGCGTGAAGCATTTCTTAAACAAGGAAGTCCAACAATTCTGTTTaccagcttgtttttttccacaaagtTATACAATCTTGTAATAATATTGTATTGGATagttatcacaatatcactgcCTGTCATTTACCTTCTGAAGACATTGGATTTGGATCCATTACAACTCCGTTGATGCGCTTTAAGGCCTGAACATTGTCACTCTTACTCATAAGGAGTTAAAAATTCCGAGAAGCCTGTTGAACAAAGCTGAAGTTGACAAAACATATAATGAAGTGCATGTACAgctctgtgcaaaagtcttggcaccctatatttttagtacaaactttgttatagatgtttattttctgacttctaca

Function

symbol description
ankrd52 Orthologous to human ANKRD52 (ankyrin repeat domain 52).

NR:

description
PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C isoform X1

GO: NA

KEGG:

id description
K15504 ANKRD52; serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314145.1 True 7669 mRNA 0.47 28 20546892 20576360

Neighbor

gene id symbol gene type direction distance location
cnpy2 LOC108255003 coding upstream 8260 20534127 ~ 20538632 (+)
nab2 LOC108255101,LOC108431520 coding upstream 39708 20495896 ~ 20507184 (+)
akr7a3 akr7a3,LOC108255199,LOC108431624,LOC108431625,LOC107706545,LOC102201483 coding upstream 81342 20458293 ~ 20465550 (+)
kcnab2a kcnab2a,kcnab2,LOC106513833,LOC108431628,LOC108255041,LOC100709904,LOC107385277,LOC108231619,LOC103136366,LOC106923773,LOC102294726,LOC103385628,LOC107712982,LOC107657983,LOC107582417,LOC107592856 coding upstream 161233 20288994 ~ 20385659 (+)
park7 park7,LOC107657982,LOC107701995 coding upstream 258138 20278572 ~ 20288754 (+)
LOC113538122 LOC108255274 coding downstream 20392 20596752 ~ 20603064 (+)
LOC113537838 NA coding downstream 41931 20618291 ~ 20621239 (+)
si:ch73-267c23.10 LOC108255296 coding downstream 57390 20633750 ~ 20650173 (+)
slc2a10 slc2a10 coding downstream 77825 20654185 ~ 20661689 (+)
smug1 smug1 coding downstream 320620 20896980 ~ 20901411 (+)
G311460 NA non-coding upstream 2339 20544021 ~ 20544553 (+)
G311471 NA non-coding upstream 25084 20519861 ~ 20521808 (+)
G311446 NA non-coding upstream 71205 20473896 ~ 20475687 (+)
G311447 NA non-coding upstream 73095 20472823 ~ 20473797 (+)
G311414 NA non-coding upstream 130713 20415584 ~ 20416179 (+)
G311444 NA non-coding downstream 3593 20579953 ~ 20583595 (+)
G311515 NA non-coding downstream 86408 20662768 ~ 20665745 (+)
G311516 NA non-coding downstream 89907 20666267 ~ 20668273 (+)
G311507 NA non-coding downstream 106471 20682831 ~ 20685069 (+)
G311506 NA non-coding downstream 108807 20685167 ~ 20690740 (+)
errfi1a errfi1 other upstream 369620 20119383 ~ 20177272 (+)
si:dkey-264d12.5 LOC108254816 other upstream 678411 19848467 ~ 19868481 (+)
vamp3 vamp3 other upstream 762967 19768983 ~ 19783925 (+)
phf13 phf13 other upstream 1029714 19508189 ~ 19517178 (+)
svbp NA other upstream 1048221 19494758 ~ 19498671 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other downstream 231498 20807858 ~ 20860727 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other downstream 294292 20870652 ~ 20882365 (+)

Expression


Co-expression Network