zgc:153675 (LOC108255011)


Basic Information

Item Value
gene id zgc:153675
gene name LOC108255011
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 376562 ~ 380543 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314150.1
GTTGGAGGAGAGAGAACAGCGCCACGtcggcagagagagagagagagaaagagagagagagaaagagagagagtctggttagactgctgtgtgtttaatgGAATAATTCAGGGAGTCGGTTTAGATGAATCACCTGCACCGCACTGACTCGCAGAACCTGCAGGAACTATGGTGAAGagtgtgaACAGCGAGGCGCAGTACAGCGTCAGTGCACTAGAGCGAGACACACATCAACCTGGGACTGAAAACaccacagATGACAGTAAGGAACACATTGCCACGGCGCCCGGAGTCCTGTGGCGTGTCACCGGGGGCGTCTTCAACGTCACCAAGGGCGTCGTCGGGGCAACCGTGGGCGGAGTCACCTGGTTGGGCGGAAAAAGCCTGGAGATCACCAAATCGGCCGTCTGCTCTGTGCCTTCGGTGGGCGTCGGCCTAGTGAAGGGCGGAGTCTCGGCCGTCGCAGGGGGCGTGTCCACGGTGGCCAGCAAAGTTCCATTTACAGGCAAGAGGAAGGACAAAGCAGAGTGAGGACGAAGACGAGGAGAAACGATGGACTGAGACGTGGGACAGACACTTACTGTGTGTTACTTCACCGACACAGACATTATCACttcactatttttattatttctgactttaagctttaaaatgcTGATATtgtttcacttcctgttgttgaaagattttatttttgaagaaaCTCTTCATCAGTCTGCCTGAAAATCTCGACAAAATATGACACCTTATTAGGAGGCCTAAGTAGGGCAcacagccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgcagtagTAATTATGGGATGTGTTTCACATTTCACTGGTGTTTAATCTGGTTGTGTGTCgctgttttattttcatatcacaGTAAATACCTAAACATTATCCCAGGTTTATAAAATGATCTCAGTAATATTGTGTTCCCTCTCAGAGGATTATGGGATTGCGTCCGTGATGAGGAGCGTTAGAACGCCGCCGTCCTTCTGAATGACTCTATAATCAACACACTGTGACATCACACAACTGACAATCAGCACACACCGACTGTTAACTGGAAATTTACTTACAATGCACTCCAAtccatctgtatgtgtgtgtgtgtgtgtgtgtgtgttcaggttggATGTTGCTGTCTCTTCCAGACTGTaatatctttaaataaaataaaataaaataaagccatATGGAACTTTAATAGAAAC
>XM_034314151.1
CGGGTTGGAGGAGAGAGAACAGCGCCACGtcggcagagagagagagagagaaagagagagagagaaagagagagagtctggttagactgctgtgtgtttaatgGAATAATTCAGGGAGTCGGTTTAGATGAATCACCTGCACCGCACTGACTCGCAGAACCTGCAGGAACTATGGTGAAGagtgtgaACAGCGAGGCGCAGTACAGCGTCAGTGCACTAGAGCGAGACACACATCAACCTGGGACTGAAAACaccacagATGACAGTAAGGAACACATTGCCACGGCGCCCGGAGTCCTGTGGCGTGTCACCGGGGGCGTCTTCAACGTCACCAAGGGCGTCGTCGGGGCAACCGTGGGCGGAGTCACCTGGTTGGGCGGAAAAAGCCTGGAGATCACCAAATCGGCCGTCGCAGGGGGCGTGTCCACGGTGGCCAGCAAAGTTCCATTTACAGGCAAGAGGAAGGACAAAGCAGAGTGAGGACGAAGACGAGGAGAAACGATGGACTGAGACGTGGGACAGACACTTACTGTGTGTTACTTCACCGACACAGACATTATCACttcactatttttattatttctgactttaagctttaaaatgcTGATATtgtttcacttcctgttgttgaaagattttatttttgaagaaaCTCTTCATCAGTCTGCCTGAAAATCTCGACAAAATATGACACCTTATTAGGAGGCCTAAGTAGGGCAcacagccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgcagtagTAATTATGGGATGTGTTTCACATTTCACTGGTGTTTAATCTGGTTGTGTGTCgctgttttattttcatatcacaGTAAATACCTAAACATTATCCCAGGTTTATAAAATGATCTCAGTAATATTGTGTTCCCTCTCAGAGGATTATGGGATTGCGTCCGTGATGAGGAGCGTTAGAACGCCGCCGTCCTTCTGAATGACTCTATAATCAACACACTGTGACATCACACAACTGACAATCAGCACACACCGACTGTTAACTGGAAATTTACTTACAATGCACTCCAAtccatctgtatgtgtgtgtgtgtgtgtgtgtgtgttcaggttggATGTTGCTGTCTCTTCCAGACTGTaatatctttaaataaaataaaataaaataaagccatATGGAACTTTAATAGAAACTT

Function

NR:

description
PREDICTED: transmembrane protein 263-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314150.1 True 1226 mRNA 0.47 3 376565 380541
XM_034314151.1 False 1177 mRNA 0.46 4 376562 380543

Neighbor

gene id symbol gene type direction distance location
wdr77 wdr77 coding upstream 50255 315968 ~ 326307 (+)
pparda ppard,ppardb,LOC108281076 coding upstream 81402 282867 ~ 295160 (+)
LOC113525392 stk38,stk38b,LOC105900354,LOC107667630,LOC105016867,LOC108265501 coding upstream 134896 226264 ~ 241666 (+)
btg2 LOC108255010 coding downstream 25565 406108 ~ 409450 (+)
arl8a arl8a,LOC107671521,LOC107722853,LOC107569762,LOC107750681 coding downstream 50969 431512 ~ 439177 (+)
apobec2a LOC108281085 coding downstream 111502 492045 ~ 495637 (+)
srsf3b srsf3,srsf3b,LOC107569752,LOC107690536,LOC107656901 coding downstream 122926 503469 ~ 508353 (+)
tmcc2 tmcc2,LOC107569750,LOC107690538,LOC107656904,LOC107572364 coding downstream 141833 522376 ~ 530478 (+)
G299528 NA non-coding upstream 122330 251723 ~ 254232 (+)
G299522 NA non-coding upstream 140072 236076 ~ 236490 (+)
G299482 NA non-coding upstream 159153 209994 ~ 217409 (+)
G299486 NA non-coding upstream 171650 203812 ~ 204912 (+)
G299503 NA non-coding upstream 197897 173753 ~ 178665 (+)
G299618 NA non-coding downstream 184733 565276 ~ 565508 (+)
G299625 NA non-coding downstream 221015 601558 ~ 602113 (+)
G299679 NA non-coding downstream 427616 808159 ~ 809350 (+)
G299708 NA non-coding downstream 457820 838363 ~ 838915 (+)
G299695 NA non-coding downstream 464925 845468 ~ 847722 (+)
dram2b NA other upstream 16304 351588 ~ 360258 (+)
LOC113525237 LOC108281078 other upstream 187245 165615 ~ 189317 (+)
cdkn1a cdkn1a other downstream 134997 515540 ~ 520943 (+)
LOC117599902 NA other downstream 298374 678917 ~ 726922 (+)
mfap2 mfap2 other downstream 377966 758509 ~ 805098 (+)
LOC113539702 LOC108281106 other downstream 462310 842853 ~ 844870 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other downstream 482715 863258 ~ 872756 (+)

Expression


Co-expression Network