cacna2d3 (cacna2d3,LOC108254724,LOC107751209,LOC107743247,LOC107582378)


Basic Information

Item Value
gene id cacna2d3
gene name cacna2d3,LOC108254724,LOC107751209,LOC107743247,LOC107582378
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 1760864 ~ 1812936 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314189.1
ACAGCCGGATGCTGAACGCTTCATTTGAGGTTTCACCCGCCTCCGTTCTTCTGTTTTTCGTCTCTACCGGAGAAATTCTCACCTCGGTCAATGGACAGCTCGCTCATTTTCCTCCGGTGGAGAAGAGCTGGTGAGCTGTGTGACAGCGAGCCGGTGTGGGAGagctgagaaacagagagaaagagagacagagagagagagagagagagagagagagagagagagagagagagagagagagagagagcgaaggCGACGGAGCGGTGAAAAGATGCGGCGGCTGCGGAGCGCTCTGGAGTTGCGCGTGCGTCCGGTGCTGTTTTGGCTCGCGCTGTGctcggcggcggcggcggcggcgcgCGGGTCACAGCACGGCATCCCGCTCGGAGTAGTTAAACTGTGGGCTTCAGCATTCGGTGGTGAAATCAAATCCATCGCCACTAAATACTCCGGTTCACAACTACTGCAGAAGAAATGTAAGGAGTATGAGCGCACAATTCGGATGGAGGAGGCTGACGGAGCCAAGCTGGTGCAGAGCATCTCTGAGAAAATGGCTGAAATGTTCCGCAGCAAAGCGCAAGCTGCACGGAGGCTGGTGGAGGCGGCGGAGGAGGCGCACTTACAGCATGAGGAGAACCCCGACCTGCAGtacgAGTACTTTAATGCTGTCCTGATAAACGAAGTGGATGAGGATGGGAACAGCGTGGAGTTGGGAGGAGAATTTATCCTGGAGCCAAACGATCACTTTAACAACCTGTCAGTTAACCTGAGTCTGAGCGTGGTGCAGGTCCCCACCAACATGTACAACAAAGATCCTGATATAGTAAACGGTGTGTACTGGTCTGAGGCTCTGAATAAAGTGTTTGTGGATAACTTCGAGAAGGACCCCTCACTCATCTGGCAGTATTTTGGAAGTGCTAAAGGTTTTTTCAGACAATACCCAGGTGTGAAATGGCATCCTGATGAACACGGAGTCATCTCATTCGACTGCCGCAACAGAAAATGgtACATCCAGGCAGCCACGTCTCCGAAGGACGTGGTGATTCTGGTGGACGTGAGTGGCAGTATGAAGGGTCTGCGGCTCACCATCGCCCGGCAGACCGTCTCCTCCATCCTGGACACGCTGGGAGACGACGACTTCTTCAACATCATCGCTTACAATCAGGAGATTCATTACGTGGAACCGTGTCTGAATGGAACTCTGGTGCAGGCCGACAAAACCAATAAAGATCATTTCCAAGCTCATCTGGACCGGCTGTTTGCGAAAGGCATCGGGCTGCTGGGAGACGCTCTGACTGAAGCTTTCACGGTTCTCAATGAGtttaacCAAGCAGGCCGTGGAAGTGTGTGCAGTCGGGCCATCATGCTGGTGACGGATGGAGCCACCGAAATGTATGACGATGTTTTTGCCAAGTACAACTGGCCCGAGCGGAAGGTGCGCATTTTCCCCTATCTGATTGGACGAGAGTCAGCCTTCGCAGATAACCTTAAATGGATGGCATGCGCTAAcaaaggcTATTTCAGTCAGATCTCCACCCTGGCTGACGTTCAGGAGAACGTTATAAGATATCTGCACGTCATGAGCCGCCCAAAAGTCATCGACCACGAGCACGACACGGTGTGGACTGAGGCCTACGTGGACCAAGCTCTCGCTCAGGCTCATAAgcttTCTGCACGCAACGGACCAAATCCCATGACCACGGTGGCCATGCCTGTCTTCAGCACCAAGAatgagacgAAAAATCAAGGCATCCTCCTGGGTGTAGTGGGAATAGACATTCCCATTCAGGACCTGATGAAGACTGTCCCGAAACACAAGCTGGGAATTCACGGTTATGCGTTTGCTGTTACCAATAATGGCTACATCCTCATGCATCCAGACCTCCGACATCTGtaccAGGACGATCAGAAGAGACGGAAGGCCCATTACAGCAGTGTTGACCTGTCTGAGGTGGAGTGGGAAGACACTGACAATTAtCTCAGGAACgccatggtgaacagaaaaacaGGCACCTTCTCCATGGAGGTAAAGAGGACGGTGGATAGAGGGAAACGTGTTCTGTCAATGCACAATGATTACTACTTCACCGACATCAGCGGAACTCCATACAGtGTTGGAGTGGCTTTGTCTCGAGGGCATGGAAAACACTTCTTTAAGGGAAATGTTTCACTGGAAACGGGTCTGCGTGATCTGGATCAGCCGGGTGTGGCTCTGGCAGATGAATGGACGTACTGCAACACCGACGAGCATCACGAGCATCGCTACCTGACGCAGGTTCAGGCCATCAAACTCTACCTGACCGGCCGCAAACCGCACCTCAAGTGTGACAGGGAGCTGATCCAGCAGGTTCTGTTCGACGCCGTGATCACCGCTCCACTCAAGGCCTACTGGACCGGCCTCGCTCTCAACAAGTCAGAGAATCCTGATAAAGGAGTGGAGATTGCTTTCCTCGGCACTCGTACTGGTCTCTCCAGAACCAACCTGTTTGTCGTCCCGGATcaactgaccaatcaggATCTGCTGAGGGCAGAGGATAAGGAGGGCATCTTTAACGCGGATCATTTTcccctgtggtataagagagcGGCTGAGCAAGTTCCTGGCACCTTCGTCTACTCCATTCCCTTTAGTGCagCACAGGATAATAAGAGTGTGGTGTTAGCCAGCACTGCTATCCAGCTCCTGGATGAGAGGAAGTCTCCTATAGTGGCTGCTGTCGGGATTCAAATGAAACTGGAATTCTTTCAGAGGAAGTTTTGGACAGCCAGCCGACAGTGTAACGCTCTGGATGGGAAATGCAGCATCAGCTGTGACAATGAgGATATTAAATGTTACCTCATTGATAACAACGGCTTCGTTCTGGTGTCTGAGGATTATTCTCAGACGGGGCTCTTCTTCGGAGAGGTGGAGGGAGCCGTCATGAACAAACTGCTCCTCATGGGTTCTTTTAAAAGgatCACGCTGTATGATTATCAGGCTCTGTGTAAGGAGTACGTAGGCAGCAGTGACAGCGCACGCACTTTACTGAACCCGTTCTCTGCTGTGAAGTGGCTCATCAGTGAAATTATCCTattcCTGCTAGAGTTTAACTTCTACAGCTGGTGGAGTTGGGACTCGACTGTAAAAGctgacAGAGTGAACAGAAGGGCGATGCTGGTGCCGTGTGATATGGAGTATCCAGTGTTTGTCTCAGAGCGGACAATCAAAGAGACGGCCGGCAGCATCGACTGCGACGGCTGtatcaggacgTTTGTCATTCAGCAGATCCCCAGCAGTAACCTCTTTATGGTTGTTGTGGAGAACAAGTGTGACTGTAGCTCCACCCCTCCAGTTACCATGGAGCCAATCGAGATCTTCTACAACGAAACTCTTAAGTGTGAGACACTGAAGTTTCAGAAGGACCGCAAACGTCCTGACTCCTGTCACCCCTTTCATCCTGaggaaaacGCCATGGAGTGCGGCTCAGCCATGACCCTTTCTCCCACGCTAGCTGCCGCTTTGATTCCCCTCCTGATCTTCCTCATTTCCAGGTGACCTTTGACGTGACCTTCAACCTTCCAGCCATGGGAGGGATCGTCCTCACTAATGGCTAATGCTAATCgggtgcaaaaacaaaaataacagttCAAATGCAGCTTGCTGACAGAATCAAACTCATCCTTATGACCTCAAAATGAAACCTGCTGACACTTTAGAGGCTCAGTGACCTTTATATGACCTTTAAGAATGTCCAAATGTAAAGGGAGTGATCGGAAATGACGTGACCCAAACGCCAGAAGGGTCTTTTTTAGAATTCATTCTAATGAGTTATTGAGAAAACTCCAGTTTGTATGGTGTATATAGATGTTGCTTGACAAagtagacattaaaaaaaattgtgctgtggcagccattttgtagctagctagcagccTGCTGGCAAATTAGTGGCTAATTAGCAGCTAAAAGCATTTCACTCTACTTCTGAGCTAAAGTGTGGCACAGGGACGCTAAACATGACTAACTTTCTGCTTTATTACATGACACAGTTATCTGAATGTTATATTTGTAACCAACTTGATGTAAACTGCTTCTGAACGTTAAATCTAACGTAGCAGTAATAGACACAGCCGAGTAACACCATACAAAtgctcaaaaataaaacaacgaCAGCTAAGACGTCTTATTAGGATGAATTCTGTGCACCCTTTGGTTTGagataagaataaaaaatatgtagaTGTGAATTTAAGCGTTTGGGACACGACCACGTTGAGGATGTTGTTCTTAATCTGAGCCATGAGTCCCGCGTCATGCGGGAGACAAGCGTGCTTATAATAAATCACTGCTTTTTGTAAATTCATCCAAAATTcaaaacattattgtttatgGGCAACTGAGAAAAattgtttctttgttaattatATTCCCATTCGTCTGCCTGTCATTTTTTACAcgctttaatttcattaaacGAAATAAACATGCATGTAGCGAGAAAACATATGGAATATTCTCCAGaaaaatgctgatttttaaaaattctgaatTGCACAAGAATGCCTgcttaacaaacaaacaaaaaaaaaaacaaagaaaataaaataaaatgtcttttaaatgattaaactatacct
>XM_034314190.1
CACAAAAGTGTTTCAGGTTTAAGGTAGCTGCAGAAGGGGCTGCTGAAAACAATAGACCTTTAAGTTAAACTGTGGGCTTCAGCATTCGGTGGTGAAATCAAATCCATCGCCACTAAATACTCCGGTTCACAACTACTGCAGAAGAAATGTAAGGAGTATGAGCGCACAATTCGGATGGAGGAGGCTGACGGAGCCAAGCTGGTGCAGAGCATCTCTGAGAAAATGGCTGAAATGTTCCGCAGCAAAGCGCAAGCTGCACGGAGGCTGGTGGAGGCGGCGGAGGAGGCGCACTTACAGCATGAGGAGAACCCCGACCTGCAGtacgAGTACTTTAATGCTGTCCTGATAAACGAAGTGGATGAGGATGGGAACAGCGTGGAGTTGGGAGGAGAATTTATCCTGGAGCCAAACGATCACTTTAACAACCTGTCAGTTAACCTGAGTCTGAGCGTGGTGCAGGTCCCCACCAACATGTACAACAAAGATCCTGATATAGTAAACGGTGTGTACTGGTCTGAGGCTCTGAATAAAGTGTTTGTGGATAACTTCGAGAAGGACCCCTCACTCATCTGGCAGTATTTTGGAAGTGCTAAAGGTTTTTTCAGACAATACCCAGGTGTGAAATGGCATCCTGATGAACACGGAGTCATCTCATTCGACTGCCGCAACAGAAAATGgtACATCCAGGCAGCCACGTCTCCGAAGGACGTGGTGATTCTGGTGGACGTGAGTGGCAGTATGAAGGGTCTGCGGCTCACCATCGCCCGGCAGACCGTCTCCTCCATCCTGGACACGCTGGGAGACGACGACTTCTTCAACATCATCGCTTACAATCAGGAGATTCATTACGTGGAACCGTGTCTGAATGGAACTCTGGTGCAGGCCGACAAAACCAATAAAGATCATTTCCAAGCTCATCTGGACCGGCTGTTTGCGAAAGGCATCGGGCTGCTGGGAGACGCTCTGACTGAAGCTTTCACGGTTCTCAATGAGtttaacCAAGCAGGCCGTGGAAGTGTGTGCAGTCGGGCCATCATGCTGGTGACGGATGGAGCCACCGAAATGTATGACGATGTTTTTGCCAAGTACAACTGGCCCGAGCGGAAGGTGCGCATTTTCCCCTATCTGATTGGACGAGAGTCAGCCTTCGCAGATAACCTTAAATGGATGGCATGCGCTAAcaaaggcTATTTCAGTCAGATCTCCACCCTGGCTGACGTTCAGGAGAACGTTATAAGATATCTGCACGTCATGAGCCGCCCAAAAGTCATCGACCACGAGCACGACACGGTGTGGACTGAGGCCTACGTGGACCAAGCTCTCGCTCAGGCTCATAAgcttTCTGCACGCAACGGACCAAATCCCATGACCACGGTGGCCATGCCTGTCTTCAGCACCAAGAatgagacgAAAAATCAAGGCATCCTCCTGGGTGTAGTGGGAATAGACATTCCCATTCAGGACCTGATGAAGACTGTCCCGAAACACAAGCTGGGAATTCACGGTTATGCGTTTGCTGTTACCAATAATGGCTACATCCTCATGCATCCAGACCTCCGACATCTGtaccAGGACGATCAGAAGAGACGGAAGGCCCATTACAGCAGTGTTGACCTGTCTGAGGTGGAGTGGGAAGACACTGACAATTAtCTCAGGAACgccatggtgaacagaaaaacaGGCACCTTCTCCATGGAGGTAAAGAGGACGGTGGATAGAGGGAAACGTGTTCTGTCAATGCACAATGATTACTACTTCACCGACATCAGCGGAACTCCATACAGtGTTGGAGTGGCTTTGTCTCGAGGGCATGGAAAACACTTCTTTAAGGGAAATGTTTCACTGGAAACGGGTCTGCGTGATCTGGATCAGCCGGGTGTGGCTCTGGCAGATGAATGGACGTACTGCAACACCGACGAGCATCACGAGCATCGCTACCTGACGCAGGTTCAGGCCATCAAACTCTACCTGACCGGCCGCAAACCGCACCTCAAGTGTGACAGGGAGCTGATCCAGCAGGTTCTGTTCGACGCCGTGATCACCGCTCCACTCAAGGCCTACTGGACCGGCCTCGCTCTCAACAAGTCAGAGAATCCTGATAAAGGAGTGGAGATTGCTTTCCTCGGCACTCGTACTGGTCTCTCCAGAACCAACCTGTTTGTCGTCCCGGATcaactgaccaatcaggATCTGCTGAGGGCAGAGGATAAGGAGGGCATCTTTAACGCGGATCATTTTcccctgtggtataagagagcGGCTGAGCAAGTTCCTGGCACCTTCGTCTACTCCATTCCCTTTAGTGCagCACAGGATAATAAGAGTGTGGTGTTAGCCAGCACTGCTATCCAGCTCCTGGATGAGAGGAAGTCTCCTATAGTGGCTGCTGTCGGGATTCAAATGAAACTGGAATTCTTTCAGAGGAAGTTTTGGACAGCCAGCCGACAGTGTAACGCTCTGGATGGGAAATGCAGCATCAGCTGTGACAATGAgGATATTAAATGTTACCTCATTGATAACAACGGCTTCGTTCTGGTGTCTGAGGATTATTCTCAGACGGGGCTCTTCTTCGGAGAGGTGGAGGGAGCCGTCATGAACAAACTGCTCCTCATGGGTTCTTTTAAAAGgatCACGCTGTATGATTATCAGGCTCTGTGTAAGGAGTACGTAGGCAGCAGTGACAGCGCACGCACTTTACTGAACCCGTTCTCTGCTGTGAAGTGGCTCATCAGTGAAATTATCCTattcCTGCTAGAGTTTAACTTCTACAGCTGGTGGAGTTGGGACTCGACTGTAAAAGctgacAGAGTGAACAGAAGGGCGATGCTGGTGCCGTGTGATATGGAGTATCCAGTGTTTGTCTCAGAGCGGACAATCAAAGAGACGGCCGGCAGCATCGACTGCGACGGCTGtatcaggacgTTTGTCATTCAGCAGATCCCCAGCAGTAACCTCTTTATGGTTGTTGTGGAGAACAAGTGTGACTGTAGCTCCACCCCTCCAGTTACCATGGAGCCAATCGAGATCTTCTACAACGAAACTCTTAAGTGTGAGACACTGAAGTTTCAGAAGGACCGCAAACGTCCTGACTCCTGTCACCCCTTTCATCCTGaggaaaacGCCATGGAGTGCGGCTCAGCCATGACCCTTTCTCCCACGCTAGCTGCCGCTTTGATTCCCCTCCTGATCTTCCTCATTTCCAGGTGACCTTTGACGTGACCTTCAACCTTCCAGCCATGGGAGGGATCGTCCTCACTAATGGCTAATGCTAATCgggtgcaaaaacaaaaataacagttCAAATGCAGCTTGCTGACAGAATCAAACTCATCCTTATGACCTCAAAATGAAACCTGCTGACACTTTAGAGGCTCAGTGACCTTTATATGACCTTTAAGAATGTCCAAATGTAAAGGGAGTGATCGGAAATGACGTGACCCAAACGCCAGAAGGGTCTTTTTTAGAATTCATTCTAATGAGTTATTGAGAAAACTCCAGTTTGTATGGTGTATATAGATGTTGCTTGACAAagtagacattaaaaaaaattgtgctgtggcagccattttgtagctagctagcagccTGCTGGCAAATTAGTGGCTAATTAGCAGCTAAAAGCATTTCACTCTACTTCTGAGCTAAAGTGTGGCACAGGGACGCTAAACATGACTAACTTTCTGCTTTATTACATGACACAGTTATCTGAATGTTATATTTGTAACCAACTTGATGTAAACTGCTTCTGAACGTTAAATCTAACGTAGCAGTAATAGACACAGCCGAGTAACACCATACAAAtgctcaaaaataaaacaacgaCAGCTAAGACGTCTTATTAGGATGAATTCTGTGCACCCTTTGGTTTGagataagaataaaaaatatgtagaTGTGAATTTAAGCGTTTGGGACACGACCACGTTGAGGATGTTGTTCTTAATCTGAGCCATGAGTCCCGCGTCATGCGGGAGACAAGCGTGCTTATAATAAATCACTGCTTTTTGTAAATTCATCCAAAATTcaaaacattattgtttatgGGCAACTGAGAAAAattgtttctttgttaattatATTCCCATTCGTCTGCCTGTCATTTTTTACAcgctttaatttcattaaacGAAATAAACATGCATGTAGCGAGAAAACATATGGAATATTCTCCAGaaaaatgctgatttttaaaaattctgaatTGCACAAGAATGCCTgcttaacaaacaaacaaaaaaaaaaacaaagaaaataaaataaaatgtcttttaaatgattaaactatacct

Function

symbol description
cacna2d3 Predicted to enable voltage-gated calcium channel activity. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Orthologous to human CACNA2D3 (calcium voltage-gated channel auxiliary subunit alpha2delta 3).

NR:

description
PREDICTED: voltage-dependent calcium channel subunit alpha-2/delta-3-like

GO: NA

KEGG:

id description
K04860 CACNA2D3; voltage-dependent calcium channel alpha-2/delta-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314189.1 True 4617 mRNA 0.48 38 1760864 1812936
XM_034314190.1 False 4289 mRNA 0.47 38 1763459 1812936

Neighbor

gene id symbol gene type direction distance location
cacna1da cacna1da,LOC108281043 coding upstream 8570 1660208 ~ 1752294 (+)
ninj1 ninj1,LOC108247379,LOC107694872,LOC106565158 coding upstream 140514 1608449 ~ 1620350 (+)
bsnb LOC108414386,LOC108254756,LOC107751196,LOC107743257,LOC107579790,LOC107694876 coding upstream 316239 1376479 ~ 1444625 (+)
bap1 bap1 coding upstream 388120 1362472 ~ 1372744 (+)
LOC113539530 LOC108254765 coding upstream 416608 1340445 ~ 1344256 (+)
slc38a3a slc38a3,LOC107715801,LOC107685967,LOC107718202,LOC106950485 coding downstream 65667 1878603 ~ 1920454 (+)
gnai2a gnai2,LOC103358732,LOC104930488,LOC101487808 coding downstream 113241 1926177 ~ 1977132 (+)
inka1a LOC108280975 coding downstream 181277 1994213 ~ 1998435 (+)
mst1rb mst1r,mst1rb,LOC107677494,LOC107686010 coding downstream 249908 2062844 ~ 2088852 (+)
LOC113539428 LOC108255194 coding downstream 713783 2526719 ~ 2568406 (+)
G299916 NA non-coding upstream 120436 1626093 ~ 1640428 (+)
G299862 NA non-coding upstream 138280 1620800 ~ 1622584 (+)
LOC117599906 NA non-coding upstream 156278 1600693 ~ 1604586 (+)
G299851 NA non-coding upstream 323607 1408502 ~ 1437257 (+)
G299833 rad54l2 non-coding upstream 404026 1356322 ~ 1356838 (+)
G300447 NA non-coding downstream 7685 1820621 ~ 1822339 (+)
G300467 NA non-coding downstream 41765 1854701 ~ 1857401 (+)
G300479 NA non-coding downstream 107591 1920527 ~ 1924467 (+)
G300487 NA non-coding downstream 130490 1943426 ~ 1944198 (+)
LOC113539753 NA non-coding downstream 194674 2007610 ~ 2021578 (+)
LOC117599925 NA other upstream 261692 1496860 ~ 1499172 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other upstream 266219 1448442 ~ 1494645 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other upstream 888108 863258 ~ 872756 (+)
LOC113539702 LOC108281106 other upstream 915994 842853 ~ 844870 (+)
mfap2 mfap2 other upstream 955766 758509 ~ 805098 (+)
mon1a mon1a other downstream 240147 2053083 ~ 2060641 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other downstream 328586 2141522 ~ 2188917 (+)
LOC113539549 LOC108254930 other downstream 902726 2715662 ~ 2723581 (+)
LOC113539463 adamts9 other downstream 2037625 3850561 ~ 3913086 (+)
cadpsa cadps other downstream 2345296 4158232 ~ 4278673 (+)

Expression


Co-expression Network