LOC117599896 (wu:fd14a01,LOC108254796,LOC107705004,LOC108443910,LOC107571573)


Basic Information

Item Value
gene id LOC117599896
gene name wu:fd14a01,LOC108254796,LOC107705004,LOC108443910,LOC107571573
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 1139608 ~ 1150910 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314216.1
TATCCAACACGTGCCAGTCCTGTTCTGCCTTTAATTTCTATATTAGTAATCAGCTAAGAAACTTGCCACCATGGGGGATGGAGAAATGGAGTGTTTCGGCAAGGCGGCCATCTACCTCCGGAAGCCGGAAAGGGAGAGGATTGAGGCTCAGAACAGACCTTTTGATGCCAAAACTGCAGTATATGTGACCGATGCCGCTGAAATGTACGTCAAAGGTACACTGAAGAGTAAAGAAGGTGGCAAAGCCACTGTCGAGACTCTGGATGGAAAAAGTGTCACAGTCAAGGAAGATGAAGTCCATCCTATGAATCCTCCAAAGTTTGACAAAATTGAAGACATGGCCATGATGACCCACCTCAATGAACCTGCTGTGCTGTTTAACCTCAAAGAGCGTTACGCAGCATGGATGATCTATACCTACTCAGGGTTGTTCTGCGTCACTGTGAACCCCTACAAGTGGCTCCCAGTGTACGACGCAGTAGTTGTGGCTGGGTACAGAGGCAAAAAGAGGATTGAAGCCCCACCTCACATCTTCTCCATCTCTGATAACGCCTATCAGTTCATGCTCACTGATCGCGAAAACCAGTCTGTCCTGATTACTGGAGAATCTGGTGCAGGAAAGACTGTGAACACAAAACGTGTCATTCAGTACTTTGCGATGGTTGGCATGTCTTCAGGGAAGAAGGCAGAGCCTACACCTGGCAAAATGCAGGGGTCACTGGAAGACCAAATTGTTGCAGCCAACCCCCTGCTGGAAGCTTACGGTAATGCCAAGACCGTGAGGAATGACAACTCCTCTCGTTTTGGTAAATTCATCAGAATTCATTTTGGGCAAACTGGCAAGCTGGCCTCAGCTGATATTGAAACCTatcTGCTGGAAAAGTCAAGAGTCACTTTCCAGCTGTCTGCTGAGAGAAGCTACCACATTTTCTACCAGCTCATGACTGGACACAAGCCAGAGCTGCTTGAGGCACTGCTCATCACCACCAACCCCTATGACTACCCTATGATCAGCCAGGGTGAAATCACAGTCAAGAGCATCAACGATGTGGAGGAGTTTATTGCCACAGATACGGCCATCGACATCCTCGGCTTCACCGCTGATGAGAAAATTAACATCTACAAGCTGACCGGTGCTGTGATGCATCATGGCAACATGAAGTTCAAGCAGAAGCAGAGGGAGGAGCAGGCTGAGCCTGATGGCACTGAggTGGCCGATAAAATCGCCTACCTTCTGGGCCTGAACTCAGCTGACATGCTGAAAGCTTTGTGCTACCCCAGAGTCAAGGTCGGAAACGAGTTTGTGACCAAAGGCCAGACTGTACCTCAGGTGAACAACTCTGTCATGGCCCTTTGCAAGTCCATCTATGAGAAAATGTTCTTGTGGATGGTCATCCGTATCAATGAGATGTTGGACACAAAGCAACAAAGACAGTTCTTCATTGGTGTGCTGGACATCGCTGGATTTGAGATCTTTGATTTCAACAGCTTGGAGCAGCTCTGCATTAACTTCACAAATGAGAAACTGCAACAGTTTTTCAACCACCACATGTTCGTGCTGGAACAAGAGGAGTACAAGAAAGAAGGTATTGAGTGGGAGTTCATTGACTTTGGTATGGACTTGGCTACCTGCATTGAGCTTATTGAGAAGCCAATGGGCATCTTCTCCATCCTTGAAGAGGAGTGCATGTTCCCCAAGGCTACAGACATGACCTTCAAGAACAAGCTTCATGACCAGCATCTTGGAAAATGTGCCTGCTTCCAGAAGCCAAAGCCTGCCAAAGGCAAAGCTGAGGCTCACTTCTCCCTGGTGCACTACGCCGGCACTGTGGACTACAACATTAGTGGATGGTTGGACAAGAACAAGGACCCACTGAACGACTCTGTTGTGCAGCTGTACCAGAAGGCAGCAAATAAACTGTTGTCCCACCTTTATTTAGCCCATGCCTCTGCTGAGGCTGAAAGTGGTGGAAAGAAAGGCAAGAAGAAGGGTGGTTCCTTCCAGACTGTCTCTGCTCTGTTCAGGGAGAACTTGGGCAAGCTGATGACCAACTTGAGGAGCACCCACCCTCACTTTGTGCGTTGCTTGATTCCAAATGAGTCCAAGACTCCAGGTCTGATGGAGAACTACCTGGTCATCCACCAGTTGAGGTGTAATGGTGTGCTGGAGGGTATCAGAATCTGCAGAAAGGGATTCCCCAGCAGAATCCTCTATGGTGACTTCAAGCAGAGGTATAAAGTCTTGAATGCCAGTGTCATCCCAGAAGGCCAATTCATTGACAACAAGAAAGCTTCAGAGAAACTCTTGGGCTCTATTGATGTCGACCACACCCAGTATAAGTTTGGACACACCAAGGTGTTCTTCAAAGCCGGTCTGCTGGGTACCCTTGAGGAGATGCGAGATGAAAAGCTAGCAAATCTGGTGACCATGACTCAGGCTTTGTGCCGTGGCTACCTCATGCGGAGGGAGTTTGTCAAAATGATGGAGAGGAGGGAATCCATCTATTCCATCCAATATAACATCCGCTCATTCATGAATGTGAAACACTGGCCATGGATGAAGCTGTACTTCAAGATCAAGCCTCTTCTCAAGAGTGCAGAGACTGAGAAGGAAATGGCTGCCATGAAGGAGAACTTTGAGAAAATGAAGGAGGACTTGGCAAAGGCACTGGCCAGAAAGAAAGAGCTTGAGGAGAAGATGGTGTCTCTGCTACAGGAGAAAAATGACCTGCAACTGCAAGTAACAGCTGAAACAGAAAACCTTGCTGATGCCGAGGAAAGGTGTGAGGGGCTCATCAAGAGCAAGATCCAGCTTGAAGCTAAACTCAAAGagtcaaatgaaagactggaggatgaggaggaaatCAATGCTGAGCTGACTGCAAAgaagaggaaactggaggatgAGTGCTCTGAGCTGAAGAAGGACATTGATGATTTGGAGCTCACCTTGGCCAAAGTGGAAAAGGAGAAACATGCCACTGagaacaagGTCAAGAACCTCACCGAGGAGATGGCATCTCTAGATGAGAGCATTGCCAAGCTCACTAAGGAGAAGAAAGCCCTCCAAGAGGCACACCAGCAGACTCTGGATGATCTCCAGGCAGAGGAAGACAAAGTCAATACTCTGACCAAATCAAAGACCAAGCTTGAGCAACAAGTCGATGATCTTGAAGGTTCGCTAGAACAAGAGAAGAAGCTGCGTATGGACCTTGAGAGAGCCAAGAGAAAGCTTGAGGGCGACTTGAAACTGGCCCAAGAGTCCATAATGGACCTGGAGAACGACAAGCAGCAGTCTGATGAGAAGATCAAAAAGAAGGACTTTGAAATAAGCCAGCTACTGAGCAAGATAGAAGATGAACAGTCTCTGGGTGCCcagcttcagaagaagattAAAGAACTCCAGGCTCGCATTGAAGAGCTGGAGGAAGAAATTGAGGCTGAGCGTGCAGCTCGTGCTAAAGTTGAGAAGCAGAGAGCTGATCTCTCCAGGGAACTTGAGGAGATCAGTGAGAGGCTAGAGGAGGCTGGTGGTGCCACTGCTGCTCAGATCGAGATGAACAAGAAGCGTGAGGCCGAGTTCCAGAAACTGCGTCGTGATCTGGAAGAGTCCACTCTGCAGCACGAAGCCACGGCTGCTGCCCTCCGCAAGAAACAAGCTGACAGTGTTGCTGAGCTTGGAGAGCAGATCGACAACCTTCAGCGTGTCAAACAGAAGCTGGAGAAGGAAAAGAGCGAATATAAAATGGAGATAGATGACCTCTCCAGTAACATGGAGGCTGTGGCAAAATCAAAGGCTAACCTAGAAAAGATGTGCCGCACCCTAGAGGACCAGCTGGGTGAACTCAAAGCTAAGAGTGATGAACATGTTCGTCAACTGAATGACATCAGCACACAAAAAGCACGCCTTCAGACTGAGAATGgTGAATTTAGCCGTCAGCTAGAGGAGAAAGAAGCACTTGTTTCTCAGCTGACCAGGGGAAAACAAGCTTACACACAGCAAATTGAGGAACTCAAGAGGCAAATCGAGGAGGAAGTCAAGGCCAAGAACGCCCTGGCTCATTCTGTCCAATCAGCTCGTCATGACTGCGATCTGCTCAGAGAGCAGTTTGAGGAAGAGCAGGAGGCCAAGGCTGAGCTTCAGCGTGCAATGTCCAAGGCCAACAGTGAGGTGGCTCAGTGGAGAACCAAATATGAGACTGATGCCATTCAGCGTACAGAGGAGCTTGAGGAGGCCAAaaaaaagCTTGCTCAGCGTCTACAAGACGCAGAGGAATCCATTGAAGCTGTGAACTCCAAATGTGCTTCTCTGGAGAAGACCAAGCAGAGACTGCAGGGTGAAGTGGAGGACCTCATGATCGATGTTGAGAGAGCCAATTCCCTGGCTGCCAACCTTGACAAGAAACAGAGGAACTTTGATAAGGTCTTGGCAGAATGGAAGCAGAAGTATGAGGAAGGCCAGGCTGAACTGGAGGGAGCTCAGAAAGAAGCTCGCTCTCTCAGCACTGAACTCTTTAAGATAAAGAACTCATATGAGGAAGCTCTGGACCATCTTGAGACCctgaagagagagaacaagaacCTGCAGCAGGAGATTTCTGACCTGACTGAACAGATTGGTGAGACTGGAAAGACCATCCATGAGCTGGAGAAGGCAAAGAAGACAGTGGAAACTGAGAAATCAGAAATTCAGACTGCTCTTGAGGAAGCTGAGGGCACACTTGAGCATGAGGAATCTAAGATCCTTCGTATCCAGCTTGAGCTCAACCAGGTTAAGAGTGAGATTGACAGGAAAGTGGCTGAGAAGGATGAGGAGATGGAGCAGATTAAGAGAAGCAGCCAGAGGGTGATTGAGTCCATGCAGACCACTCTGGACTCTGAGGTCAGGAGCAGGAATGATGCTTTGAGGGTCAAGAAGAAGATGGAGGGAGACCTGAATGAGATGGAAATTCAGCTGAGCCATGCCAACCGCCAGGCTGCTGAGGCCCAGAAACAGCTCAGGAATGTCCAAGGACAGCTCAAGGATGCCCAAGTGCACCTTGACGAGGCTGTCAGAGGACAGGAAGACATGAAGGAGCAGGTGGCCATGGTGGAGCGCAGGAATAACCTGATGCTGGCAGAGATTGAGGAACTCAGAACTGCACtggagcagacagagagaggacgCAAAGTGGCCGAACAGGAGCTGGTTGATGCCAGTGAGCGTGTGGCACTGCTGCACTCTCAGAATACCAGTCTAATCAACACCAAGAAGAAGCTTGAGGCTGACCTGGTTCAAATACAAGGTGAGGTGGATGATACTGTCCAAGAGGCCAGAAACGCCGAAGAGAAGGCCAAGAAGGCCATCACAGATGCTGCCATGATGGCAGAAGAACTGAAGAAGGAGCAGGACACCAGTGCTCACCTggagaggatgaagaagaaCCTTGAGGTTACAATCAAAGATCTGCAGCACCGTCTGGATGAGGCTGAGAGTCTTGCCATGAAGGGTGGAAAGAAGCAGCTCCAGAAACTGGAGGCTAGGGTGCGTGAGCTGGAATCTGAAGTTGAATCTGAGCAGAGACGTAGTGCTGAATCTGTTAAAGGTGTCCGCAAATATGAAAGACGAGTGAAAGAGCTCACCTATCAGACTGAGGAGGACAAGAAGAATGTGATTAGACTGCAGGACCTTGTGGACAAACTGCAGCTGAAAGTGAAGACCTACAAGAGGCAGGCTGAGGAGGCTGAGGAGCAAGCCAACACTCACCTGTCGAGGTACAGGAAAGTGCAGCATGAGATGGAAGAAGCTCAGGAGCGCGCTGACATCGCTGAGTCCCAGGTCAACAAGCTGAGAGCCAAGAGCAGAGAAGTTGGAAAGAGCAAAGATGTGGCTGAATGAAAGATGAAGACCAACATCACTGGGCACCAACAAGCAACCATATAATATGTTTCTTGTTAATGTCCATgcataaactaaataaataaatttgcatcAAATATA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0032982 myosin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K24220 MYH1s; myosin heavy chain 1/2/3/4/8/13/7B/15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314216.1 True 5980 mRNA 0.49 40 1139608 1150910

Neighbor

gene id symbol gene type direction distance location
LOC117595666 LOC108444092,LOC108444093,LOC108254796,LOC108443907 coding upstream 10060 1117850 ~ 1129548 (+)
LOC113539531 wu:fd14a01,LOC108444093,LOC108444092,LOC108254796,LOC108443910,LOC108443907 coding upstream 26699 1102826 ~ 1112909 (+)
LOC113539532 wu:fd14a01,LOC108444093,LOC108444092,LOC108254796,LOC108443910,LOC108443907 coding upstream 40632 1088853 ~ 1098976 (+)
LOC113539455 LOC108444095 coding upstream 55773 1008849 ~ 1083835 (+)
LOC113539454 LOC108254709 coding upstream 153098 985330 ~ 986510 (+)
LOC113539522 LOC108444092,LOC108443907,LOC108254796,LOC108444093 coding downstream 13178 1164088 ~ 1175373 (+)
LOC113539523 LOC108254796,LOC108443907,LOC108444093,LOC108444092,LOC108254798 coding downstream 28429 1179339 ~ 1190298 (+)
LOC113539456 LOC108254796,LOC108443910,LOC108444093,LOC108444092,LOC107575389 coding downstream 60609 1211519 ~ 1224289 (+)
LOC117599924 NA coding downstream 162797 1313707 ~ 1314702 (+)
LOC113539530 LOC108254765 coding downstream 189535 1340445 ~ 1344256 (+)
G299735 NA non-coding upstream 132655 965530 ~ 1006953 (+)
G299734 NA non-coding upstream 148901 954435 ~ 990707 (+)
G299659 nckipsd non-coding upstream 196082 941836 ~ 943526 (+)
G299719 NA non-coding upstream 266135 873235 ~ 873473 (+)
G299695 NA non-coding upstream 291886 845468 ~ 847722 (+)
G299773 hyal2 non-coding downstream 104156 1255066 ~ 1298909 (+)
G299787 NA non-coding downstream 121237 1272147 ~ 1272673 (+)
G299786 NA non-coding downstream 127938 1278848 ~ 1301404 (+)
G299833 rad54l2 non-coding downstream 205412 1356322 ~ 1356838 (+)
G299851 NA non-coding downstream 257592 1408502 ~ 1437257 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other upstream 266852 863258 ~ 872756 (+)
LOC113539702 LOC108281106 other upstream 294738 842853 ~ 844870 (+)
mfap2 mfap2 other upstream 334510 758509 ~ 805098 (+)
LOC117599902 NA other upstream 412686 678917 ~ 726922 (+)
cdkn1a cdkn1a other upstream 618665 515540 ~ 520943 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other downstream 297532 1448442 ~ 1494645 (+)
LOC117599925 NA other downstream 345950 1496860 ~ 1499172 (+)
mon1a mon1a other downstream 902173 2053083 ~ 2060641 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other downstream 990612 2141522 ~ 2188917 (+)
LOC113539549 LOC108254930 other downstream 1564752 2715662 ~ 2723581 (+)

Expression


Co-expression Network