LOC117595666 (LOC108444092,LOC108444093,LOC108254796,LOC108443907)


Basic Information

Item Value
gene id LOC117595666
gene name LOC108444092,LOC108444093,LOC108254796,LOC108443907
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 1117850 ~ 1129548 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314217.1
ATGGGGGATGGAGAAATGGAGTGTTTCGGCCCGGCGGCCATCTACCTCCGGAAGCCGGAAAAGGAGAGGATTGAGGCTCAGAACAGGCCTTTTGATGCCAAAACTGCAGTCTTTGTGACCGATGCAGCTGAGATGTACGTCAAAGGTACACTGAAGAGTAAAGAGGGTGGCAAAGCCACTGTCGAGACTCTGGATGGAAAAAGTGTCACAGTCAAGGAAGATGAAGTCCATCCTATGAATCCTCCAAAGTTTGACAAAATTGAAGACATGGCCATGATGACCCACCTCAATGAACCTGCTGTGCTGTTTAACCTCAAAGAGCGTTACGCAGCATGGATGATCTACACCTACTCAGGGTTGTTCTGCGTCACTGTGAACCCCTACAAGTGGCTCCCAGTGTACGACGCAGTAGTTGTGTCTGGATACAGAGGCAAAAAGAGGATTGAAGCCCCACCTCACATCTTCTCCATCTCTGATAACGCCTATCAGTTCATGCTCACTGATCGCGAAAACCAGTCTGTCCTGATTACTGGAGAATCTGGTGCAGGAAAGACTGTGAACACAAAACGTGTCATTCAGTACTTTGCGATGGTTGGCATGTCTTCAGGGAAGAAGGCAGAGCCTACACCTGGCAAAATGCAGGGGTCACTGGAAGACCAAATTGTTGCAGCCAACCCCCTGCTGGAAGCTTACGGTAATGCCAAGACCGTGAGGAATGACAACTCCTCTCGTTTTGGTAAATTCATCAGAATTCATTTTGGGCAAACTGGCAAGCTGGCCTCAGCTGATATTGAAACCTatcTGCTGGAAAAGTCAAGAGTCACTTTCCAGCTGTCTGCTGAGAGAAGCTACCACATTTTCTACCAGCTCATGACTGGACACAAGCCAGAGCTGATTGAGGCACTGCTCATCACCACCAACCCCTACGACTACCATATGATCAGCCAGGGTGAAATCACAGTCAAGAGCATCAACGATGTGGAGGAGTTCATTGCCACAGATACGGCCATCGACATCCTCGGCTTCACCGCTGATGAGAAAATTAACATCTACAAACTGACCGGTGCTGTCATGCATCATGGCAACATGAAGTTCAAGCAGAAGCAGAGGGAAGAGCAGGCTGAGCCTGATGGCACTGAggTGGCCGATAAAATCGCCTACCTTCTGGGCCTGAACTCAGCTGACATGCTGAAAGCTTTGTGCTACCCCAGAGTCAAGGTCGGAAACGAGTTTGTGACCAAAGGCCAGACTGTACCTCAGGTGAACAACTCCGTCATGGCCCTTTGCAAATCCATCTATGAGAAAATGTTCTTGTGGATGGTCATCCGTATCAATGAGATGTTGGATACAAAGCAACAAAGACAGTTCTTCATTGGTGTGCTGGACATCGCTGGATTTGAGATCTTTGATTTCAACAGCTTGGAGCAGCTCTGCATTAACTTCACAAATGAGAAACTGCAACAGTTTTTCAACCACCACATGTTCGTGCTGGAACAAGAGGAGTACAAGAAAGAAGGTATTGAGTGGGAGTTCATTGACTTTGGTATGGACTTGGCTACCTGCATTGAGCTTATTGAGAAGCCAATGGGCATCTTCTCCATCCTTGAAGAGGAGTGCATGTTCCCAAAGGCTACAGACACATCTTTCAAGAACAAGCTTCATGACCAGCATCTTGGAAAATGTGCCTGCTTCCAGAAGCCAAAGCCTGCCAAAGGCAAAGCTGAGGCTCACTTCTCCCTGGTGCACTACGCCGGCACTGTGGACTACAACATTAGTGGATGGTTGGACAAGAACAAGGACCCACTGAACGACTCTGTTGTGCAGCTGTACCAGAAGTCAGCAAACAAACTGTTGTGCCACCTGTATGCAGCCCATGGCGCTGCTGATGCTGAAAGTGGTGGAAAGAAAGGCAAGAAGAAGGGTGGTTCCTTCCAGACTGTGTCTGCTCTGTTCAGGGAGAACTTGGGCAAGCTGATGACCAACCTAAGAAGCACTCACCCTCACTTTGTGCGTTGCTTGATTCCAAATGAGTCCAAGACTCCAGGTCTGATGGAGAACTACCTGGTCATCCACCAGTTGAGGTGTAATGGTGTGCTGGAGGGTATCAGAATCTGCAGAAAGGGATTCCCCAGCAGAATCCTCTATGGTGACTTCAAGCAGAGGTATAAAGTCTTGAATGCCAGTGTCATCCCAGAAGGCCAATTCATTGACAACAAGAAAGCTTCAGAGAAACTCTTGGGCTCTATTGATGTCGACCACACCCAGTATAAGTTTGGACACACCAAGGTGTTCTTCAAAGCCGGTCTGCTGGGTACACTTGAGGAGATGCGAGATGAAAAACTAGCAAATCTGGTGACCATGACTCAGGCTTTGTGCCGTGGCTACCTCATGCGGAGGGAGTTTGTCAAAATGATGGAGAGGAGGGAATCCATCTATTCCATCCAATATAACATCCGCTCATTCATGAATGTGAAACACTGGCCATGGATGAAGCTGTACTTCAAGATCAAGCCTCTTCTCAAGAGTGCAGAGACTGAGAAGGAAATGGCTGCCATGAAGGAGAACTTTGAGAAAATGAAGGAGGACTTGTCAAAGGCACTggccagaaagaaagaacttgAGGAGAAGATGGTGTCTCTGCTACAGGAGAAAAATGACCTGCAACTGCAAGTAACAGCTGAAACCGAAAACCTTGCTGATGCCGAGGAAAGGTGTGAGGGGCTCATCAAGAGTAAGATCCAGCTTGAAGCTAAACTCAAAGagtcaaatgagagactggaggatgaggaggaaatCAATGCTGAGCTGACTGCCAAgaagaggaaactggaggatgAGTGCTCTGAGCTGAAGAAGGACATTGATGATTTGGAGCTCACCTTGGCCAAAGTGGAAAAGGAGAAACATGCCACTGagaacaagGTCAAGAACCTCACCGAGGAGATGGCATCTCTAGATGAGAGCATTGCCAAGCTCACTAAGGAGAAGAAAGCCCTCCAAGAGGCACACCAGCAGACTCTGGATGATCTCCAGGCAGAGGAAGACAAAGTCAATACTCTGACCAAATCAAAGACCAAGCTTGAGCAACAAGTCGATGATCTTGAAGGTTCTCTGGAACAAGAGAAGAAGCTGCGTATGGACCTTGAGAGAGCCAAGAGAAAGCTTGAAGGCGACTTGAAACTGGCCCAAGAGTCCATAATGGACCTGGAGAACGACAAGCAGCAGTCTGATGAGAAGATCAAGAAGAAGGACTTTGAAATAAGCCAGCTACTGAGCAAGATAGAAGATGAACAGTCTTTGGGTGCCCAGCATCAGAAGAAGATTAAAGAACTCCAGGCTCGCATTGAAGAGCTGGAGGAAGAAATTGAAGCTGAGCGTGCAGCTCGTGCTAAAGTTGAGAAGCAGAGAGCTGATCTCTCCAGGGAACTTGAGGAGATCAGTGAGAGGCTAGAGGAAGCTGGAGGTGCCACTGCTGCTCAGATCGAGATGAACAAGAAGCGTGAGGCCGAGTTCCAGAAACTGCGTCGTGATCTGGAAGAGTCCACTCTGCAGCACGAAGCCACGGCTGCTGCCCTCCGCAAGAAACAAGCTGACAGTGTTGCTGAGCTTGGAGAGCAGATCGACAACCTTCAGCGTGTCAAACAGAAGCTGGAGAAGGAAAAGAGCGAATATAAAATGGAGATAGATGACCTCTCCAGTAACATGGAGGCTGTGGCAAAATCAAAGGCTAACCTAGAAAAGATGTGCCGCACCCTAGAGGACCAGCTGGGTGAACTCAAAGCTAAGAGTGATGAACATGTTCGTCAACTGAATGACATCAGCACACAAAAAGCACGCCTTCAGACTGAGAATGgTGAATTTAGCCGTCAGCTAGAGGAGAAGGAAGCACTTGTTTCTCAGCTGACCAGGGGAAAACAAGCTTACACACAGCAAATTGAGGAACTCAAGAGGCAAATCGAGGAGGAAGTCAAGGCCAAGAACGCCCTGGCTCATTCTGTCCAATCAGCTCGTCATGACTGCGATCTGCTCAGAGAGCAGTTTGAGGAAGAGCAGGAGGCCAAGGCTGAGCTTCAGCGTGCAATGTCCAAGGCCAACAGTGAGGTGGCTCAGTGGAGAACCAAATATGAGACTGATGCCATTCAGCGTACTGAGGAGCTTGAGGAGGCCAAGAAAAAGCTTGCTCAGCGTCTACAAGACGCAGAGGAATCCATTGAAGCTGTGAACTCCAAATGTGCTTCTCTGGAGAAGACCAAGCAGAGACTGCAGGGTGAAGTGGAGGACCTCATGATCGATGTTGAGAGAGCCAATTCCCTGGCTGCCAACCTTGACAAGAAACAGAGGAACTTTGATAAGGTCTTGGCAGAATGGAAGCAGAAGTATGAGGAAGGCCAGGCTGAACTGGAGGGAGCTCAGAAAGAAGCTCGCTCTCTCAGCACTGAACTCTTTAAGATAAAGAACTCATATGAGGAATCTCTGGACCATCTTGAGACcctgaagagagaaaacaaaaatctgcaGCAGGAGATTTCTGACCTGACTGAACAGATTGGTGAGACTGGAAAGACCATCCATGAGCTGGAGAAGGCAAAGAAGACAGTGGAAACTGAGAAATCAGAAATTCAGACTGCTCTTGAGGAAGCTGAGGGCACACTTGAGCATGAGGAATCTAAGATCCTTCGTATCCAGCTTGAGCTCAACCAGGTTAAGAGTGAGATTGACAGGAAACTGGCTGAGAAGGATGAGGAGATGGAGCAGATTAAGAGAAACAGCCAGAGGGTGATTGAGTCCATGCAGACTACTCTGGACTCTGAGGTCAGGAGCAGGAATGATGCTTTGAGGGTCAAGAAGAAGATGGAGGGAGACCTGAATGAGATGGAAATTCAGCTGAGCCATGCCAACCGCCAGGCTGCTGAGGCCCAGAAACAGCTCAGGAATGTCCAAGGACAGCTCAAGGATGCCCAAGTGCACCTTGACGAGGCTGTCAGAGGACAGGAAGACATGAAGGAGCAGTTGGCCATGGTGGAGCGCAGGAATAACCTGATGCTGGCAGAGATTGAGGAACTCAGAACTGCACtggagcagacagagagaggacgCAAAGTGGCCGAACAGGAGCTGGTTGATGCCAGTGAGCGTGTAGGACTGCTGCACTCTCAGAATACCAGTCTAATGAACACCAAGAAGAAGCTTGAAGCTGACCTGGTTCAAATACAAGGTGAGGTGGATGATACTGTCCAAGAGGCCAGAAATGCTGAAGAGAAGGCCAAGAAGGCCATCACAGATGCTGCCATGATGGCTGAAGAACTGAAGAAAGAGCAGGACACTAGTGCTCACCTGGAAAGGATGAAGAAGAACCTTGAGGTTACAGTCAAAGATCTGCAGCACCGTCTGGATGAGGCTGAGAGTCTTGCCATGAAGGGTGGAAAGAAGCAGCTCCAGAAACTGGAATCTAGGGTGCGTGAACTGGAGAGTGAGGTTGAAGCTGAGCAGAGACGTGGCGCTGAATCCGTTAAAGGAGTCCGTAAATATGAGAGAAGAGTGAAGGAGCTCACCTACCAGACTGAGGAGGATAAGAAGAATGTGACTAGACTGCAGGACCTTGTGGATAAACTGCAGCTGAAAGTGAAGGCCTACAAGAGACAGTCTGAGGAAGCTGAGGAGCAGGCCAACACTCATCTGTCGAGGTACAGGAAAGTGCAGCACGAGCTGGAGGAAGCTCAGGAGCGTGCTGACATCGCTGAGTCCCAGGTCAACAAGCTGAGAGTCAAGAGCAGAGAGGCTGGAAAGggcAAGGAGTCAGCTGAATAAAGGGTGAAGAGAAAACAAGACAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0032982 myosin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K24220 MYH1s; myosin heavy chain 1/2/3/4/8/13/7B/15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314217.1 True 5831 mRNA 0.49 39 1117850 1129548

Neighbor

gene id symbol gene type direction distance location
LOC113539531 wu:fd14a01,LOC108444093,LOC108444092,LOC108254796,LOC108443910,LOC108443907 coding upstream 4941 1102826 ~ 1112909 (+)
LOC113539532 wu:fd14a01,LOC108444093,LOC108444092,LOC108254796,LOC108443910,LOC108443907 coding upstream 18874 1088853 ~ 1098976 (+)
LOC113539455 LOC108444095 coding upstream 34015 1008849 ~ 1083835 (+)
LOC113539454 LOC108254709 coding upstream 131340 985330 ~ 986510 (+)
LOC113539739 tmem43 coding upstream 148662 963027 ~ 969188 (+)
LOC117599896 wu:fd14a01,LOC108254796,LOC107705004,LOC108443910,LOC107571573 coding downstream 10060 1139608 ~ 1150910 (+)
LOC113539522 LOC108444092,LOC108443907,LOC108254796,LOC108444093 coding downstream 34540 1164088 ~ 1175373 (+)
LOC113539523 LOC108254796,LOC108443907,LOC108444093,LOC108444092,LOC108254798 coding downstream 49791 1179339 ~ 1190298 (+)
LOC113539456 LOC108254796,LOC108443910,LOC108444093,LOC108444092,LOC107575389 coding downstream 81971 1211519 ~ 1224289 (+)
LOC117599924 NA coding downstream 184159 1313707 ~ 1314702 (+)
G299735 NA non-coding upstream 110897 965530 ~ 1006953 (+)
G299734 NA non-coding upstream 127143 954435 ~ 990707 (+)
G299659 nckipsd non-coding upstream 174324 941836 ~ 943526 (+)
G299719 NA non-coding upstream 244377 873235 ~ 873473 (+)
G299695 NA non-coding upstream 270128 845468 ~ 847722 (+)
G299773 hyal2 non-coding downstream 125518 1255066 ~ 1298909 (+)
G299787 NA non-coding downstream 142599 1272147 ~ 1272673 (+)
G299786 NA non-coding downstream 149300 1278848 ~ 1301404 (+)
G299833 rad54l2 non-coding downstream 226774 1356322 ~ 1356838 (+)
G299851 NA non-coding downstream 278954 1408502 ~ 1437257 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other upstream 245094 863258 ~ 872756 (+)
LOC113539702 LOC108281106 other upstream 272980 842853 ~ 844870 (+)
mfap2 mfap2 other upstream 312752 758509 ~ 805098 (+)
LOC117599902 NA other upstream 390928 678917 ~ 726922 (+)
cdkn1a cdkn1a other upstream 596907 515540 ~ 520943 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other downstream 318894 1448442 ~ 1494645 (+)
LOC117599925 NA other downstream 367312 1496860 ~ 1499172 (+)
mon1a mon1a other downstream 923535 2053083 ~ 2060641 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other downstream 1011974 2141522 ~ 2188917 (+)
LOC113539549 LOC108254930 other downstream 1586114 2715662 ~ 2723581 (+)

Expression


Co-expression Network