fblim1 (fblim1,LOC107719030,LOC100709954)


Basic Information

Item Value
gene id fblim1
gene name fblim1,LOC107719030,LOC100709954
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 888372 ~ 902581 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314238.1
GAAGGGAGGGAatgagggaggaaaaggagtggcctctgtgtgtgtcgatagctgtctttctctctcagtgacGACATGGGAGCGACAACAGGAGAGTAGAGCACcgagaaaagacaaaaagagagtgagagagagagatagagagagagagatagagagagagagacggagagagagagagacggagagagagtgCGACTTGTCCTTCAGCACCATGACGTCCGCCGCTCCGCCCAAGAGGATGGTGTCCTCAGTCTTCATCACTCTGGCGTCTCCGTACAGAGCCACGGTCACGCCCACGCCGCAGATCACGCAGCACTCCGCCGTCCCCGTCAGTCCCACCGACGCACGCAGGAagtcctccacctcctccacctcggCCCCGGAGTCAGGACACGCCGTCGCTCCCGCTGAGGCCCGGCCCAGTCCTCTGGAGATCCggaaaacacacagcaacaaacCCGACGCTACACACACTCCGTACAGAgcgggaaagagagaggagaaacgCGCTGAGGAGTTTTTCCCTCCACCTCCCCCTGTGTCTCTGGACTCTGGGGTCTCTGAATCCAAGCCCCTTCCTCCACCGCCTCCACCCACCTGCCCTCTGTCTGACACCAAACGCGAACCACTGGCTTCTACACAggaggtgtgtgtggagagagcgCCTCCTGCTGATCAGAGTCAGAACGCCCCGACTGCAGGAGTTCAGACTGAAGAGGGGCTTACACCGgatgtgtgtgggTTCTGTCGTAAGCCCGTGGCCCTGAGCGAGCCGGCGATCGAGGCCTTGAACAGGACGTACCACAGCAGCTGCTTCCAGTGCCGACAGTGTCACGCTGCTCTCGCCGGGAAAACCTACTACAACAAGGCCGGGATCCCTCTGTGTGAGGACTGCTACCAGGCCAGTCTGGAGCCGTGCTGGGCGTGCGGTGAGGTCATCATAGATCACGTGATCCGAGCGCTGGAACGAGCCTATCACCCGCCCTGCTTCGTGTGCACGACCTGCAGGCAGCCAATCGGAGAGCAGCGTTTTGCACAGGGGGAGGTGGGGGAGGTGTACTGCCTGCAAGACTACTACAGgaaatACGCgcctcagtgcagtgtgtgtggagagcTGATAATCCCGAGAGAGGACGGGACGGACAGCTACACGGTCGAGTGTCTCGGACGCTCTTTTCACGAGGACTGCTACcgctgtgagCTGTGTGCGGTGCTTCTCTCCCCGGAGCCCAACGAACACGGCTGCCACCCGCTGGACGGACAGATCCTGTGCAAACCCTGCCATCTCTCTCTGATCCAGACGAGCCAACACTAAACCCACGCCACATTATCGCTAAACTAATCGTTTTCCTCGTTACGTCATTCTGCATTCATGCTCTCGGTCCAAAACGCTTGAACTCTCATTCTAAAACACTTttactgtgagaaaaaaaagcctagtGTGGCTTAccgtaccaaaaaaaaaaaaaaaaaacaacaccagaAACaccaaatctcacacacacttacctcaTCAGAAACACTCCCACTTCCTGAAGGTCATAGGTCATCGAAAGTTCATCGTTTTCTCGGCACTAAAGAAACTTGTTATAAGGAAACATCTTAACAGTATTTAGTTTACTTCATAaaccacatttaaaaacaactcacTAAAAATGTTGCTTAATGTGTTAaaacaattttgaaaaatttgaGGTGGAACAAAATGGGATGTTTATAACTGGTTAGCTAGTTgagtagctagttagctagctagctctgcgaattttttttttaaaactcaactTGCgctttaatgattaatgattaatgatttcctcttgtattaaaaagtgaatgtttgattttaattttttcgtGGCTGGTGTATAATCGGTTGattctaaataaaattttcacaAACACAGCTAAGCTTTGTAACTAGTTAGCTGGCTAATCACCTTGCTTTCCAAGACATAAAAAAACGTACGCATTATTTACGTTGAGGCATATTAGGGATTATTTGTTTCACTCTTATCTGAAATATTGGCTATTTGCCATAAAGTTCATGGGGATTAAAATAGGGATTAAGAAACACTCGTATTTGTTCCAcactttaaatttattaatcGTAACAACTGTCTGATAATCCTGTCTAGCGTTTTAGATCGTCTCCTAGAGTTCACACTAATCAACTGCTAATTGGTTTATGAGCTAGCAGGCTACAATAGCAATAGACGTGGTGTTTTCTATGCTAGCTAGtgtgttaaaatgaattatagtGGAACTCTGAGCTGCGTTTGGGACGCAGCCGGATACTCAGCGATCCTGTGAGAAACGCACGAGAGCTACAGTGCTACATGacggacaaaaacaaaacaaaa
>XM_034314239.1
cGAAGGGAGGGAatgagggaggaaaaggagtggcctctgtgtgtgtcgatagctgtctttctctctcagtgacGACATGGGAGCGACAACAGGAGAGTAGAGCACcgagaaaagacaaaaagagagtgagagagagagatagagagagagagatagagagagagagacggagagagagagagacggagagagagtgCGACTTGTCCTTCAGaaagGTGAGGCAGCAGGTGAAACTAAACGACTTTATCACATGATCTCTACCTGTGTATCAGCGTAACACTTCACCGTTCACACACACCGAATTAGACGAGACTTTAAATATCCGGTACGAATAACATCGCCGTGTTTGTCGTTCAGCGTAACAGGACGTCGTCTCTACAGCACCATGACGTCCGCCGCTCCGCCCAAGAGGATGGTGTCCTCAGTCTTCATCACTCTGGCGTCTCCGTACAGAGCCACGGTCACGCCCACGCCGCAGATCACGCAGCACTCCGCCGTCCCCGTCAGTCCCACCGACGCACGCAGGAagtcctccacctcctccacctcggCCCCGGAGTCAGGACACGCCGTCGCTCCCGCTGAGGCCCGGCCCAGTCCTCTGGAGATCCggaaaacacacagcaacaaacCCGACGCTACACACACTCCGTACAGAgcgggaaagagagaggagaaacgCGCTGAGGAGTTTTTCCCTCCACCTCCCCCTGTGTCTCTGGACTCTGGGGTCTCTGAATCCAAGCCCCTTCCTCCACCGCCTCCACCCACCTGCCCTCTGTCTGACACCAAACGCGAACCACTGGCTTCTACACAggaggtgtgtgtggagagagcgCCTCCTGCTGATCAGAGTCAGAACGCCCCGACTGCAGGAGTTCAGACTGAAGAGGGGCTTACACCGgatgtgtgtgggTTCTGTCGTAAGCCCGTGGCCCTGAGCGAGCCGGCGATCGAGGCCTTGAACAGGACGTACCACAGCAGCTGCTTCCAGTGCCGACAGTGTCACGCTGCTCTCGCCGGGAAAACCTACTACAACAAGGCCGGGATCCCTCTGTGTGAGGACTGCTACCAGGCCAGTCTGGAGCCGTGCTGGGCGTGCGGTGAGGTCATCATAGATCACGTGATCCGAGCGCTGGAACGAGCCTATCACCCGCCCTGCTTCGTGTGCACGACCTGCAGGCAGCCAATCGGAGAGCAGCGTTTTGCACAGGGGGAGGTGGGGGAGGTGTACTGCCTGCAAGACTACTACAGgaaatACGCgcctcagtgcagtgtgtgtggagagcTGATAATCCCGAGAGAGGACGGGACGGACAGCTACACGGTCGAGTGTCTCGGACGCTCTTTTCACGAGGACTGCTACcgctgtgagCTGTGTGCGGTGCTTCTCTCCCCGGAGCCCAACGAACACGGCTGCCACCCGCTGGACGGACAGATCCTGTGCAAACCCTGCCATCTCTCTCTGATCCAGACGAGCCAACACTAAACCCACGCCACATTATCGCTAAACTAATCGTTTTCCTCGTTACGTCATTCTGCATTCATGCTCTCGGTCCAAAACGCTTGAACTCTCATTCTAAAACACTTttactgtgagaaaaaaaagcctagtGTGGCTTAccgtaccaaaaaaaaaaaaaaaaaacaacaccagaAACaccaaatctcacacacacttacctcaTCAGAAACACTCCCACTTCCTGAAGGTCATAGGTCATCGAAAGTTCATCGTTTTCTCGGCACTAAAGAAACTTGTTATAAGGAAACATCTTAACAGTATTTAGTTTACTTCATAaaccacatttaaaaacaactcacTAAAAATGTTGCTTAATGTGTTAaaacaattttgaaaaatttgaGGTGGAACAAAATGGGATGTTTATAACTGGTTAGCTAGTTgagtagctagttagctagctagctctgcgaattttttttttaaaactcaactTGCgctttaatgattaatgattaatgatttcctcttgtattaaaaagtgaatgtttgattttaattttttcgtGGCTGGTGTATAATCGGTTGattctaaataaaattttcacaAACACAGCTAAGCTTTGTAACTAGTTAGCTGGCTAATCACCTTGCTTTCCAAGACATAAAAAAACGTACGCATTATTTACGTTGAGGCATATTAGGGATTATTTGTTTCACTCTTATCTGAAATATTGGCTATTTGCCATAAAGTTCATGGGGATTAAAATAGGGATTAAGAAACACTCGTATTTGTTCCAcactttaaatttattaatcGTAACAACTGTCTGATAATCCTGTCTAGCGTTTTAGATCGTCTCCTAGAGTTCACACTAATCAACTGCTAATTGGTTTATGAGCTAGCAGGCTACAATAGCAATAGACGTGGTGTTTTCTATGCTAGCTAGtgtgttaaaatgaattatagtGGAACTCTGAGCTGCGTTTGGGACGCAGCCGGATACTCAGCGATCCTGTGAGAAACGCACGAGAGCTACAGTGCTACATGacggacaaaaacaaaacaaaa
>XM_034314240.1
tgtttacagaaagGTGAGGCAGCAGGTGAAACTAAACGACTTTATCACATGATCTCTACCTGTGTATCAGCGTAACACTTCACCGTTCACACACACCGAATTAGACGAGACTTTAAATATCCGGTACGAATAACATCGCCGTGTTTGTCGTTCAGCGTAACAGGACGTCGTCTCTACAGCACCATGACGTCCGCCGCTCCGCCCAAGAGGATGGTGTCCTCAGTCTTCATCACTCTGGCGTCTCCGTACAGAGCCACGGTCACGCCCACGCCGCAGATCACGCAGCACTCCGCCGTCCCCGTCAGTCCCACCGACGCACGCAGGAagtcctccacctcctccacctcggCCCCGGAGTCAGGACACGCCGTCGCTCCCGCTGAGGCCCGGCCCAGTCCTCTGGAGATCCggaaaacacacagcaacaaacCCGACGCTACACACACTCCGTACAGAgcgggaaagagagaggagaaacgCGCTGAGGAGTTTTTCCCTCCACCTCCCCCTGTGTCTCTGGACTCTGGGGTCTCTGAATCCAAGCCCCTTCCTCCACCGCCTCCACCCACCTGCCCTCTGTCTGACACCAAACGCGAACCACTGGCTTCTACACAggaggtgtgtgtggagagagcgCCTCCTGCTGATCAGAGTCAGAACGCCCCGACTGCAGGAGTTCAGACTGAAGAGGGGCTTACACCGgatgtgtgtgggTTCTGTCGTAAGCCCGTGGCCCTGAGCGAGCCGGCGATCGAGGCCTTGAACAGGACGTACCACAGCAGCTGCTTCCAGTGCCGACAGTGTCACGCTGCTCTCGCCGGGAAAACCTACTACAACAAGGCCGGGATCCCTCTGTGTGAGGACTGCTACCAGGCCAGTCTGGAGCCGTGCTGGGCGTGCGGTGAGGTCATCATAGATCACGTGATCCGAGCGCTGGAACGAGCCTATCACCCGCCCTGCTTCGTGTGCACGACCTGCAGGCAGCCAATCGGAGAGCAGCGTTTTGCACAGGGGGAGGTGGGGGAGGTGTACTGCCTGCAAGACTACTACAGgaaatACGCgcctcagtgcagtgtgtgtggagagcTGATAATCCCGAGAGAGGACGGGACGGACAGCTACACGGTCGAGTGTCTCGGACGCTCTTTTCACGAGGACTGCTACcgctgtgagCTGTGTGCGGTGCTTCTCTCCCCGGAGCCCAACGAACACGGCTGCCACCCGCTGGACGGACAGATCCTGTGCAAACCCTGCCATCTCTCTCTGATCCAGACGAGCCAACACTAAACCCACGCCACATTATCGCTAAACTAATCGTTTTCCTCGTTACGTCATTCTGCATTCATGCTCTCGGTCCAAAACGCTTGAACTCTCATTCTAAAACACTTttactgtgagaaaaaaaagcctagtGTGGCTTAccgtaccaaaaaaaaaaaaaaaaaacaacaccagaAACaccaaatctcacacacacttacctcaTCAGAAACACTCCCACTTCCTGAAGGTCATAGGTCATCGAAAGTTCATCGTTTTCTCGGCACTAAAGAAACTTGTTATAAGGAAACATCTTAACAGTATTTAGTTTACTTCATAaaccacatttaaaaacaactcacTAAAAATGTTGCTTAATGTGTTAaaacaattttgaaaaatttgaGGTGGAACAAAATGGGATGTTTATAACTGGTTAGCTAGTTgagtagctagttagctagctagctctgcgaattttttttttaaaactcaactTGCgctttaatgattaatgattaatgatttcctcttgtattaaaaagtgaatgtttgattttaattttttcgtGGCTGGTGTATAATCGGTTGattctaaataaaattttcacaAACACAGCTAAGCTTTGTAACTAGTTAGCTGGCTAATCACCTTGCTTTCCAAGACATAAAAAAACGTACGCATTATTTACGTTGAGGCATATTAGGGATTATTTGTTTCACTCTTATCTGAAATATTGGCTATTTGCCATAAAGTTCATGGGGATTAAAATAGGGATTAAGAAACACTCGTATTTGTTCCAcactttaaatttattaatcGTAACAACTGTCTGATAATCCTGTCTAGCGTTTTAGATCGTCTCCTAGAGTTCACACTAATCAACTGCTAATTGGTTTATGAGCTAGCAGGCTACAATAGCAATAGACGTGGTGTTTTCTATGCTAGCTAGtgtgttaaaatgaattatagtGGAACTCTGAGCTGCGTTTGGGACGCAGCCGGATACTCAGCGATCCTGTGAGAAACGCACGAGAGCTACAGTGCTACATGacggacaaaaacaaaacaaaa
>XM_034314241.1
cacatgcacacactctaacgcacactaacacacacacagcttggtAAATACCACAAAACAGTATCCTCAGGTCACACTAAAGACGTGAAATACAGCAACTCCACatgtgctacacacacacacacacacacacacacacacacactgaacactgaacactaaaaCCTGAACTGAATAACAGAAGTTAATTACAGAGCTGTTAATGAGCTGAAACACTGACCTCCAGTGAAGGAGGTTATGATTCAGTCTGACCAGCAGAGGGAGTCGCACCATGACGTCCGCCGCTCCGCCCAAGAGGATGGTGTCCTCAGTCTTCATCACTCTGGCGTCTCCGTACAGAGCCACGGTCACGCCCACGCCGCAGATCACGCAGCACTCCGCCGTCCCCGTCAGTCCCACCGACGCACGCAGGAagtcctccacctcctccacctcggCCCCGGAGTCAGGACACGCCGTCGCTCCCGCTGAGGCCCGGCCCAGTCCTCTGGAGATCCggaaaacacacagcaacaaacCCGACGCTACACACACTCCGTACAGAgcgggaaagagagaggagaaacgCGCTGAGGAGTTTTTCCCTCCACCTCCCCCTGTGTCTCTGGACTCTGGGGTCTCTGAATCCAAGCCCCTTCCTCCACCGCCTCCACCCACCTGCCCTCTGTCTGACACCAAACGCGAACCACTGGCTTCTACACAggaggtgtgtgtggagagagcgCCTCCTGCTGATCAGAGTCAGAACGCCCCGACTGCAGGAGTTCAGACTGAAGAGGGGCTTACACCGgatgtgtgtgggTTCTGTCGTAAGCCCGTGGCCCTGAGCGAGCCGGCGATCGAGGCCTTGAACAGGACGTACCACAGCAGCTGCTTCCAGTGCCGACAGTGTCACGCTGCTCTCGCCGGGAAAACCTACTACAACAAGGCCGGGATCCCTCTGTGTGAGGACTGCTACCAGGCCAGTCTGGAGCCGTGCTGGGCGTGCGGTGAGGTCATCATAGATCACGTGATCCGAGCGCTGGAACGAGCCTATCACCCGCCCTGCTTCGTGTGCACGACCTGCAGGCAGCCAATCGGAGAGCAGCGTTTTGCACAGGGGGAGGTGGGGGAGGTGTACTGCCTGCAAGACTACTACAGgaaatACGCgcctcagtgcagtgtgtgtggagagcTGATAATCCCGAGAGAGGACGGGACGGACAGCTACACGGTCGAGTGTCTCGGACGCTCTTTTCACGAGGACTGCTACcgctgtgagCTGTGTGCGGTGCTTCTCTCCCCGGAGCCCAACGAACACGGCTGCCACCCGCTGGACGGACAGATCCTGTGCAAACCCTGCCATCTCTCTCTGATCCAGACGAGCCAACACTAAACCCACGCCACATTATCGCTAAACTAATCGTTTTCCTCGTTACGTCATTCTGCATTCATGCTCTCGGTCCAAAACGCTTGAACTCTCATTCTAAAACACTTttactgtgagaaaaaaaagcctagtGTGGCTTAccgtaccaaaaaaaaaaaaaaaaaacaacaccagaAACaccaaatctcacacacacttacctcaTCAGAAACACTCCCACTTCCTGAAGGTCATAGGTCATCGAAAGTTCATCGTTTTCTCGGCACTAAAGAAACTTGTTATAAGGAAACATCTTAACAGTATTTAGTTTACTTCATAaaccacatttaaaaacaactcacTAAAAATGTTGCTTAATGTGTTAaaacaattttgaaaaatttgaGGTGGAACAAAATGGGATGTTTATAACTGGTTAGCTAGTTgagtagctagttagctagctagctctgcgaattttttttttaaaactcaactTGCgctttaatgattaatgattaatgatttcctcttgtattaaaaagtgaatgtttgattttaattttttcgtGGCTGGTGTATAATCGGTTGattctaaataaaattttcacaAACACAGCTAAGCTTTGTAACTAGTTAGCTGGCTAATCACCTTGCTTTCCAAGACATAAAAAAACGTACGCATTATTTACGTTGAGGCATATTAGGGATTATTTGTTTCACTCTTATCTGAAATATTGGCTATTTGCCATAAAGTTCATGGGGATTAAAATAGGGATTAAGAAACACTCGTATTTGTTCCAcactttaaatttattaatcGTAACAACTGTCTGATAATCCTGTCTAGCGTTTTAGATCGTCTCCTAGAGTTCACACTAATCAACTGCTAATTGGTTTATGAGCTAGCAGGCTACAATAGCAATAGACGTGGTGTTTTCTATGCTAGCTAGtgtgttaaaatgaattatagtGGAACTCTGAGCTGCGTTTGGGACGCAGCCGGATACTCAGCGATCCTGTGAGAAACGCACGAGAGCTACAGTGCTACATGacggacaaaaa

Function

symbol description
fblim1 Predicted to enable filamin binding activity. Predicted to be involved in cell-cell adhesion. Predicted to be active in focal adhesion and stress fiber. Orthologous to human FBLIM1 (filamin binding LIM protein 1).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K24416 FBLIM1, FBLP1; filamin-binding LIM protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314238.1 False 2366 mRNA 0.49 8 891730 902581
XM_034314239.1 True 2537 mRNA 0.49 9 891729 902581
XM_034314240.1 False 2335 mRNA 0.49 8 893879 902581
XM_034314241.1 False 2413 mRNA 0.49 8 888372 902571

Neighbor

gene id symbol gene type direction distance location
LOC113539452 NA coding upstream 22 884715 ~ 888350 (+)
slc25a34 slc25a34,LOC102777532 coding upstream 4826 875393 ~ 883546 (+)
sdhb sdhb,LOC107656920,LOC105905141,LOC104949017,LOC100705239 coding upstream 95319 786355 ~ 793053 (+)
tmem240b tmem240 coding upstream 118417 762266 ~ 769955 (+)
ssu72 ssu72,LOC107690546 coding upstream 127155 753354 ~ 761217 (+)
si:ch1073-335m2.2 LOC108254705,LOC107737932 coding downstream 3848 906429 ~ 926559 (+)
ndufaf3 ndufaf3 coding downstream 48962 951543 ~ 967971 (+)
LOC113539739 tmem43 coding downstream 60446 963027 ~ 969188 (+)
LOC113539454 LOC108254709 coding downstream 82749 985330 ~ 986510 (+)
LOC113539455 LOC108444095 coding downstream 106268 1008849 ~ 1083835 (+)
G299719 NA non-coding upstream 14899 873235 ~ 873473 (+)
G299695 NA non-coding upstream 40650 845468 ~ 847722 (+)
G299708 NA non-coding upstream 49457 838363 ~ 838915 (+)
G299679 NA non-coding upstream 79022 808159 ~ 809350 (+)
G299625 NA non-coding upstream 286259 601558 ~ 602113 (+)
G299659 nckipsd non-coding downstream 39255 941836 ~ 943526 (+)
G299734 NA non-coding downstream 51854 954435 ~ 990707 (+)
G299735 NA non-coding downstream 62949 965530 ~ 1006953 (+)
G299773 hyal2 non-coding downstream 352485 1255066 ~ 1298909 (+)
G299787 NA non-coding downstream 369566 1272147 ~ 1272673 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other upstream 15616 863258 ~ 872756 (+)
LOC113539702 LOC108281106 other upstream 43502 842853 ~ 844870 (+)
mfap2 mfap2 other upstream 83274 758509 ~ 805098 (+)
LOC117599902 NA other upstream 161450 678917 ~ 726922 (+)
cdkn1a cdkn1a other upstream 367429 515540 ~ 520943 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other downstream 545861 1448442 ~ 1494645 (+)
LOC117599925 NA other downstream 594279 1496860 ~ 1499172 (+)
mon1a mon1a other downstream 1150502 2053083 ~ 2060641 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other downstream 1238941 2141522 ~ 2188917 (+)
LOC113539549 LOC108254930 other downstream 1813081 2715662 ~ 2723581 (+)

Expression


Co-expression Network