sdhb (sdhb,LOC107656920,LOC105905141,LOC104949017,LOC100705239)


Basic Information

Item Value
gene id sdhb
gene name sdhb,LOC107656920,LOC105905141,LOC104949017,LOC100705239
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 786355 ~ 793053 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314245.1
tgcgcatgcgcagtgcgaGTGTCAGTCACAGGGTCAGTTGTGTGTAAAGATGGCGGCTGTGTGTTTCTCCTTGAAGCGCTCCGGTGCAGCGGCGATGCGCTGTTCAGCTCTAACAGCGAGCGCCCGGTATGCACAGACAGCAGCAGCCGCTCAGCCACGCATTAAGAAGTTCCAGATTTACCGCTGGGATCCGGATAAGCCCGGGGACAAACCGCGCATGCAGACGTACGACATCGACCTCAACGCctgtgGGCCGATGGTGTTGGACGCTCTGATTAAGATAAAAAACGAGATCGACCCGACTCTCACTTTCAGACGCTCCTGCAGAGAAGgtATCTGCGGTTCGTGTGCGATGAACATTAACGGTGGAAACACGCTGGCGTGCCTGAACAGGATCGACACTAACACCAGTAAAGTGTCGAAGATTTACCCCCTGCCTCACATGTACGTGGTTAAAGACCTGGTACCGgACATGAATAATTTTTATGCTCAGTACAAGTCGATCGAGCCGTATCTGAAGAGGAAGGATGAGAGTCAGCAGGGGAAGGAGCAGTACCTGCAGAGCGTGGACGACCGACAGAAACtggacgGTCTGTACGAGTGTATCCTGTGTGCGTGCTGCAGTACCAGCTGTCCCAGTTACTGGTGGAACGGAGATAAATACCTGGGACCCGCCGTCCTCATGCAGgcgtaCCGGTGGATGGTGGACTCTCGTGATGAGTACACAGAGGAGCGTCTGGCTAAACTGCAGGACCCGTTTTCTCTGTACCGCTGTCACACCATCATGAACTGCACCAAGACCTGCCCcaaggGTCTGAATCCCGGGAAAGCCATCGCTGAGATTAAGAAGATGATGGCGACGTATAAGGAGAAGAAAGCAGCCACTGCGTGATGACGGTTATCTGGAGAACGGAATGCACTCGaagaaatctgattggtcaattcCTGGCCTTGACTTCCTCTTTCAgctacacgctacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcactcactcactcactcacacacaccctgacagTATTGACACATGAGAAAATTTCATCCATGCTGCATTCCTTCATCTGTTACAGGAtctaagaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacttatgtgtacaggtgtgtgtaagagtatggtgaggtgaggtgaggttgGGTGTGATCCAgtcaaacataaaatattaaaacgcTTGTATCCATGGGATATATTGATTatctgtgtaataaataaatgtagaaagTCCGCA

Function

symbol description
sdhb Predicted to enable iron-sulfur cluster binding activity and ubiquinone binding activity. Predicted to be involved in aerobic respiration and respiratory electron transport chain. Predicted to act upstream of or within tricarboxylic acid cycle. Predicted to be located in mitochondrial inner membrane. Predicted to be part of mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone). Predicted to be active in mitochondrial membrane. Is expressed in several structures, including alar plate midbrain region; immature eye; optic tectum; pronephric duct; and segmental plate. Human ortholog(s) of this gene implicated in Carney-Stratakis syndrome; gastrointestinal stromal tumor; mitochondrial complex II deficiency; paraganglioma; and pheochromocytoma. Orthologous to human SDHB (succinate dehydrogenase complex iron sulfur subunit B).

NR:

description
succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006810 transport biological_process
GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) cellular_component
GO:0008177 succinate dehydrogenase (ubiquinone) activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function
GO:0051538 3 iron, 4 sulfur cluster binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function
GO:0048039 ubiquinone binding molecular_function

KEGG:

id description
K00235 SDHB, SDH2; succinate dehydrogenase (ubiquinone) iron-sulfur subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314245.1 True 1319 mRNA 0.51 8 786355 793053

Neighbor

gene id symbol gene type direction distance location
tmem240b tmem240 coding upstream 16400 762266 ~ 769955 (+)
ssu72 ssu72,LOC107690546 coding upstream 25138 753354 ~ 761217 (+)
fndc10 fndc10 coding upstream 33739 748649 ~ 752616 (+)
LOC113539444 vwa1 coding upstream 46003 725540 ~ 740352 (+)
LOC113539512 LOC108281094 coding upstream 82995 699026 ~ 703360 (+)
slc25a34 slc25a34,LOC102777532 coding downstream 82340 875393 ~ 883546 (+)
LOC113539452 NA coding downstream 91662 884715 ~ 888350 (+)
fblim1 fblim1,LOC107719030,LOC100709954 coding downstream 95319 888372 ~ 902581 (+)
si:ch1073-335m2.2 LOC108254705,LOC107737932 coding downstream 113376 906429 ~ 926559 (+)
ndufaf3 ndufaf3 coding downstream 158490 951543 ~ 967971 (+)
G299625 NA non-coding upstream 184242 601558 ~ 602113 (+)
G299618 NA non-coding upstream 220847 565276 ~ 565508 (+)
G299528 NA non-coding upstream 532123 251723 ~ 254232 (+)
G299522 NA non-coding upstream 549865 236076 ~ 236490 (+)
G299482 NA non-coding upstream 568946 209994 ~ 217409 (+)
G299679 NA non-coding downstream 15106 808159 ~ 809350 (+)
G299708 NA non-coding downstream 45310 838363 ~ 838915 (+)
G299695 NA non-coding downstream 52415 845468 ~ 847722 (+)
G299719 NA non-coding downstream 80182 873235 ~ 873473 (+)
G299659 nckipsd non-coding downstream 148783 941836 ~ 943526 (+)
LOC117599902 NA other upstream 59433 678917 ~ 726922 (+)
cdkn1a cdkn1a other upstream 265412 515540 ~ 520943 (+)
dram2b NA other upstream 426097 351588 ~ 360258 (+)
LOC113525237 LOC108281078 other upstream 597038 165615 ~ 189317 (+)
LOC113539702 LOC108281106 other downstream 49800 842853 ~ 844870 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other downstream 70205 863258 ~ 872756 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other downstream 655389 1448442 ~ 1494645 (+)
LOC117599925 NA other downstream 703807 1496860 ~ 1499172 (+)
mon1a mon1a other downstream 1260030 2053083 ~ 2060641 (+)

Expression


Co-expression Network