Gene
RNA
| Item | Value |
|---|---|
| gene id | ssu72 |
| gene name | ssu72,LOC107690546 |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047614.1 |
| NCBI id | CM018560.1 |
| chromosome length | 21552800 |
| location | 753354 ~ 761217 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| symbol | description |
|---|---|
| ssu72 | Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Predicted to be involved in dephosphorylation of RNA polymerase II C-terminal domain; mRNA polyadenylation; and termination of RNA polymerase II transcription. Predicted to act upstream of or within mRNA processing. Predicted to be located in cytoplasm and nucleus. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Is expressed in central nervous system. Orthologous to human SSU72 (SSU72 homolog, RNA polymerase II CTD phosphatase). |
| description |
|---|
| Ssu72 RNA polymerase II CTD phosphatase-like |
| id | name | namespace |
|---|---|---|
| GO:0006397 | mRNA processing | biological_process |
| GO:0016311 | dephosphorylation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0004721 | phosphoprotein phosphatase activity | molecular_function |
| id | description |
|---|---|
| K15544 | SSU72; RNA polymerase II subunit A C-terminal domain phosphatase SSU72 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_034314256.1 | True | 1538 | mRNA | 0.44 | 5 | 753354 | 761217 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| fndc10 | fndc10 | coding | upstream | 738 | 748649 ~ 752616 (+) |
| LOC113539444 | vwa1 | coding | upstream | 13002 | 725540 ~ 740352 (+) |
| LOC113539512 | LOC108281094 | coding | upstream | 49994 | 699026 ~ 703360 (+) |
| nbl1 | nbl1,LOC105897883 | coding | upstream | 57239 | 687951 ~ 696115 (+) |
| dstyk | dstyk | coding | upstream | 145733 | 571588 ~ 607621 (+) |
| tmem240b | tmem240 | coding | downstream | 1049 | 762266 ~ 769955 (+) |
| sdhb | sdhb,LOC107656920,LOC105905141,LOC104949017,LOC100705239 | coding | downstream | 25138 | 786355 ~ 793053 (+) |
| slc25a34 | slc25a34,LOC102777532 | coding | downstream | 114176 | 875393 ~ 883546 (+) |
| LOC113539452 | NA | coding | downstream | 123498 | 884715 ~ 888350 (+) |
| fblim1 | fblim1,LOC107719030,LOC100709954 | coding | downstream | 127155 | 888372 ~ 902581 (+) |
| G299625 | NA | non-coding | upstream | 151241 | 601558 ~ 602113 (+) |
| G299618 | NA | non-coding | upstream | 187846 | 565276 ~ 565508 (+) |
| G299528 | NA | non-coding | upstream | 499122 | 251723 ~ 254232 (+) |
| G299522 | NA | non-coding | upstream | 516864 | 236076 ~ 236490 (+) |
| G299482 | NA | non-coding | upstream | 535945 | 209994 ~ 217409 (+) |
| G299679 | NA | non-coding | downstream | 46942 | 808159 ~ 809350 (+) |
| G299708 | NA | non-coding | downstream | 77146 | 838363 ~ 838915 (+) |
| G299695 | NA | non-coding | downstream | 84251 | 845468 ~ 847722 (+) |
| G299719 | NA | non-coding | downstream | 112018 | 873235 ~ 873473 (+) |
| G299659 | nckipsd | non-coding | downstream | 180619 | 941836 ~ 943526 (+) |
| LOC117599902 | NA | other | upstream | 26432 | 678917 ~ 726922 (+) |
| cdkn1a | cdkn1a | other | upstream | 232411 | 515540 ~ 520943 (+) |
| dram2b | NA | other | upstream | 393096 | 351588 ~ 360258 (+) |
| LOC113525237 | LOC108281078 | other | upstream | 564037 | 165615 ~ 189317 (+) |
| LOC113539702 | LOC108281106 | other | downstream | 81636 | 842853 ~ 844870 (+) |
| fbxo42 | fbxo42,LOC107719051,LOC107656898 | other | downstream | 102041 | 863258 ~ 872756 (+) |
| erc2 | erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 | other | downstream | 687225 | 1448442 ~ 1494645 (+) |
| LOC117599925 | NA | other | downstream | 735643 | 1496860 ~ 1499172 (+) |
| mon1a | mon1a | other | downstream | 1291866 | 2053083 ~ 2060641 (+) |
