LOC113539543


Basic Information

Item Value
gene id LOC113539543
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 6084440 ~ 6090037 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314280.1
AGACTCTGAGACTCTGAGACTTTGAgactttttccacacacacacacacacacatactttgtGTGGAGATGTTAGTCTTAGTCTTGATCTGGTCATGTCTGTTTAACGGTTAATTAATGGTTCATTTGGATAGCTGTATCTAATAAGAGTTATTTTTGAGGCACATTGTTAAGCTATTGGTAAATAAAGCTGGTGCAGGAAGAGCTTTCACTTTCGATTTCTCTGAAGACTGAAGTACgggtgtgtttcagtgtgcttTTAAATGGCTGCAGAAGGCTCTGCTGTTTCTCATTAGACTTTCTTGTCCTGTTTTCTCCTTCATTACGAGGCTCTTCGGCGTTATGGATAAATCTTGCAAGGCTGTGAGACAGAACCGGGCTATGGGTAACTCACACAACTTTTTCCAGGACTCTGACGAGGAATATGACTCTACATGGGATGATGAAACTGACCATGAGGAGACTAGAGAGTCCCCTGTGCAATGGCCCTTAAGTCCAAAGAGGAACACATATGCTGCGAAAGACATGCAAACCTTTAGACACAAGTGTCAGaAAACCGAAAATAATGACAGGACAGATGATATGGAGAATGACGAAGACTTACCAAATCTGAAGTTTTACAAAAATGTCATGCGTTTCCGCCCTGATGGTGTGTACATTGAGGATTTTCACAACTACTGGTTTGGTGACTATGGCAGGCTGGAATATGTGAACTCCTACATTCAATGGCTGTTTCCAATTCAGGAGAAGGGAGAGAACTTTGATTCACGTGAGCTTAGCCTAAAAGAAATCAAGCTGTTCCGTAGGGATGAGGAGGTGAAGAAAAAATTGTTGACGTCTTACAAGATCATGTTGGACTTCTACGGCATAGAACTTGTCAGTGAGGAAACTGGAAAGGTGAAACGTGCAGTAAACTGGAAAGAACGATTTGCAAACCTAAATAGaaacacacacaacaatcttcGCATCACCCGCATTCTAAAGTGCCTGGGTTTACTGGGGTTTCGTCACTATCAAGCACCGCTGGTTCATTTCTTCCTTGAGGAGACTCTGGTGGAAGACACACTTCCACGAGTAAAGCACAGCGTTCTGGACTACTTTATGTTCGCAGTTCTGGACAAGTCTGAACGAAAAAAGCTGATCAGATTTGCCTTCTGGAATTTTGAGCCAAAAGAGAAATTTGTGTGGTGTCCTAGGAGGATTCGTAATAAATTCTTGAAAGAGAAAGGAACAGGGAGCCACAAATTACATGCTGGTCCCAATGAAGGAATGTCAAGTGATTCAAACTCTCAAAGCAATCAGAATGATCTGATGAACAGCAGAGTacaaaataaagctgaaatcaAAACAGATACTAATGAAGACACAAGTGATGAAAAATCTCTTAGCAGTAAAATCAGAAATGATGAGAATGTGTCAAGTGAGTGTCAAGATTCTGAAAAACAAGCTTTACCTGTCTCTGCTGCAGGAAATGCAAACACAAGTAATGCTAATGAAGAAACTCAAACTCTGTCCTAGTTGATTCTCAGAAGGAAGACAGTAAAGCAAGAAATAAGAAGATCCCAAATTCTGTACAAAAAGCTACAGAAAAATCAGATGAGAATGGCAATAAATATGATGACTCTACCAAACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314280.1 True 1633 mRNA 0.41 8 6084440 6090037

Neighbor

gene id symbol gene type direction distance location
LOC113539542 NA coding upstream 4634 6073558 ~ 6079806 (+)
LOC113539544 NA coding upstream 13386 6067054 ~ 6071054 (+)
taf4a taf4,taf4a,LOC108436032 coding upstream 486201 5582516 ~ 5598239 (+)
si:ch211-253b8.5 LOC108254983 coding upstream 506844 5557568 ~ 5577596 (+)
bmp7a bmp7,LOC108435091 coding upstream 540416 5520122 ~ 5544024 (+)
LOC113539546 NA coding downstream 8973 6099010 ~ 6104059 (+)
ncoa3 ncoa3,LOC108255004,LOC108436109,LOC107717960 coding downstream 70753 6160790 ~ 6198383 (+)
LOC113539620 NA coding downstream 215640 6305677 ~ 6308696 (+)
LOC113539691 NA coding downstream 220655 6310692 ~ 6313470 (+)
LOC113539617 tmcc1b,LOC108255160,LOC108436190,LOC107746889,LOC107656050,LOC107755185,LOC107696833 coding downstream 228838 6318875 ~ 6334112 (+)
G302585 NA non-coding upstream 503461 5577633 ~ 5580979 (+)
G302575 NA non-coding upstream 519426 5522534 ~ 5565014 (+)
G302586 NA non-coding upstream 522916 5560613 ~ 5561524 (+)
G302530 NA non-coding upstream 867015 5175570 ~ 5217425 (+)
LOC117599916 NA non-coding upstream 1206065 4837152 ~ 4878375 (+)
G303181 NA non-coding downstream 260155 6350192 ~ 6351096 (+)
G303404 NA non-coding downstream 545820 6635857 ~ 6659338 (+)
G303437 NA non-coding downstream 701281 6791318 ~ 6793226 (+)
G303645 LOC108281052 non-coding downstream 777681 6867718 ~ 6870772 (+)
G303658 fmod non-coding downstream 808453 6898490 ~ 6900530 (+)
ptprga ptprg,LOC107752167,LOC106583020 other upstream 612879 5210644 ~ 5471561 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other upstream 1615244 4451040 ~ 4469196 (+)
cadpsa cadps other upstream 1805767 4158232 ~ 4278673 (+)
LOC113539463 adamts9 other upstream 2171354 3850561 ~ 3913086 (+)
LOC113539549 LOC108254930 other upstream 3360859 2715662 ~ 2723581 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other downstream 110409 6200446 ~ 6293749 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other downstream 408023 6498060 ~ 6502636 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other downstream 573931 6663968 ~ 6779358 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other downstream 1884554 7974591 ~ 8026929 (+)
nfasca nfasc other downstream 2391058 8481095 ~ 8561702 (+)

Expression


Co-expression Network