hnrnpa1a (LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559)


Basic Information

Item Value
gene id hnrnpa1a
gene name LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 20870652 ~ 20882365 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314334.1
AATCACAATCGCACGCTTGACCGTGCGTCATGACGTATTTCATCTTCTTCGCGAGGCGCTTTCGGTGAAGGCTTGTGTTTCTGAGCAGCACCGAGCCGCCGCCATGTCTAAAGAGACGCCTCGCGAGCCCGAGCAGATGCGAAAGCTCTTCATCGGGGGTCTGAGCTTCGAGACGACAGATGAGAGCCTTCGGGCGCATTTCGAACAATGGGGAACCCTGACAGACTGCGTGgtgATGAGGGATCCAAACACTAAGAGGTCCAGGGGGTTCGGCTTCGTGACCTACAGCTCGGTGAACGAAGTCGACGCAGCGATGGACGCTCGGCCTCACAAAGTGGACGGGAGAGCCGTCGAGCCCAAAAGAGCCGTCTCGCGAGAGgaCTCGTGCAGGCCGGGCGCTCACTCCACGGTGAAGAAGATCTTCGTTGGGGGAATCAAGGAGGACACGGACGAGGAGCACCTGCGCGACTACTTCAGCCAATTCGGCAAAATCGAGGAAGTGAACATCATGACGGAGAAGAACAGCGACAAGAGGAGGGGCTTCGCCTTCGTCACGTTCGACGACCACGACGCCGTGGACAGGATAGTCATTCAGAAGTATCACACGGTGAACGGTCACAACTGTGAAGTGAGGAAAGCGCTTTCCAGAGAAGAGATGAACAGAGTGTCCATGAACAacagagGCGGCCGCGGAGGCGGTGGAGGAAACTTCGGCGGTCGAGGAGGTGGAGGATACGGAGGTGGATACGGTGGCGGAGGAGGAGGACGTGGCGGATACGGAGGCGGAGACGGATACGGAAACGGATACGGAGGAAACGGTGGATATGGTGGAGGCGGTCCTGGTTATGGCGGTAACCGTGGTTACGGAGGAGGTGGAGGCGGTGGCTATGGCAACCAGGGCGGCGGCGGAGGTGGATACGGAGGCGGCGGATACGACAACTACAACGGCGGAGGAGGCGGAGGAAACTACGGAGGAGGAAACTTCGGAGGCGGTGGCGGCGGCGGCGACTACAACGACTTCGGCAACTACAACAATCAGTCGTCGTCGAATTACGGCCCGATGAAGGGAGGAAACTACGGCGGTGGCGGCAGgagcggcggcggcggcggtcCGTACGGCGGCGGATATGGCGGTGGTTCCGGTGGCGGTTACGGAGGCGGATCTGGAGGAAGGAGGTTCTAAGTTTTAGGCCACAGTACTTAGGAGAGGAGAGCCAgagagaggatgatgaggatgatgatgaggatgatgatgatgatgacagggAAAGGAGAGAAATGAAGGAAGCAGGTTTACACACCTAGAATCTGCCCAGCGATATTAACGTCTGCCACACGCCAGGAAACGTGTATgatagaggagaaagagaaaaatcatGTCCGGGTGCCGGGGGTGGGATGAGTGGGGCGGGGTTGGGGGTCATGTGAGGTcaacgttgttttgttttgtttgttttaaataagtATTTTTGATCCTGGAcgatattattttattgttagctCTTTAGCTTAACATTGATGTCTGTGAAGTGTAAATCATTCCATTTTAGGCAGgttctttatatttcttttttttttttttttttatttgctaccTTTTTAGGGTTTTTTATGTAATCCGCCATCAATCAAGATGAAATAAATCGCTCctgagttttttta
>XR_004580241.1
AATCACAATCGCACGCTTGACCGTGCGTCATGACGTATTTCATCTTCTTCGCGAGGCGCTTTCGGTGAAGGCTTGTGTTTCTGAGCAGCACCGAGCCGCCGCCATGTCTAAAGAGACGCCTCGCGAGCCCGAGCAGATGCGAAAGCTCTTCATCGGGGGTCTGAGCTTCGAGACGACAGATGAGAGCCTTCGGGCGCATTTCGAACAATGGGGAACCCTGACAGACTGCGTGgtgATGAGGGATCCAAACACTAAGAGGTCCAGGGGGTTCGGCTTCGTGACCTACAGCTCGGTGAACGAAGTCGACGCAGCGATGGACGCTCGGCCTCACAAAGTGGACGGGAGAGCCGTCGAGCCCAAAAGAGCCGTCTCGCGAGAGgaCTCGTGCAGGCCGGGCGCTCACTCCACGGTGAAGAAGATCTTCGTTGGGGGAATCAAGGAGGACACGGACGAGGAGCACCTGCGCGACTACTTCAGCCAATTCGGCAAAATCGAGGAAGTGAACATCATGACGGAGAAGAACAGCGACAAGAGGAGGGGCTTCGCCTTCGTCACGTTCGACGACCACGACGCCGTGGACAGGATAGTCATTCAGAAGTATCACACGGTGAACGGTCACAACTGTGAAGTGAGGAAAGCGCTTTCCAGAGAAGAGATGAACAGAGTGTCCATGAACAacagagGCGGCCGCGGAGGCGGTGGAGGAAACTTCGGCGGTCGAGGAGGTGGAGGATACGGAGGTGGATACGGTGGCGGAGGAGGAGGACGTGGCGGATACGGAGGCGGAGACGGATACGGAAACGGATACGGAGGAAACGGTGGATATGGTGGAGGCGGTCCTGGTTATGGCGGTAACCGTGGTTACGGAGGAGGTGGAGGCGGTGGCTATGGCAACCAGGGCGGCGGCGGAGGTGGATACGGAGGCGGCGGATACGACAACTACAACGGCGGAGGAGGCGGAGGAAACTACGGAGGAGGAAACTTCGGAGGCGGTGGCGGCGGCGGCGACTACAACGACTTCGGCAACTACAACAATCAGTCGTCGTCGAATTACGGCCCGATGAAGGGAGGAAACTACGGCGGTGGCGGCAGgagcggcggcggcggcggtcCGTACGGCGGCGGATATGGCGGTGGTTCCGGTGGCGGTTACGGAGGCGGATCTGGAGGAAGGAGGTTCTAAGTTTTAGAAACGACAGAACCAGGGGATGGATTTCTTTCTTCCGTGTGGAGAGCTTTTCCAGCGCAGAGAgctgatgatttttttcctgagaaGgGTGTTTCGGGTTGAGGATCAAATGTCTGCTGCTGGATggagtttttacttttttttttttttttaataaagatttttaacattaatttttataataaaattttaaagaaagtcttttttttttttttggttctcttTCCTCTATATCACAACCAACATATTTGTATGAGGTACCAAACCAGAACCAGGTCATACAGCTCTCTTCTGGTGTTTCGTTCCAAATAATGTCTCTGATAACTAGataatattaaaacttttttttac

Function

NR:

description
PREDICTED: heterogeneous nuclear ribonucleoprotein A1-like isoform X1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314334.1 True 1662 mRNA 0.54 11 20870652 20878407
XR_004580241.1 False 1540 misc_RNA 0.54 12 20870652 20882365

Neighbor

gene id symbol gene type direction distance location
slc2a10 slc2a10 coding upstream 208963 20654185 ~ 20661689 (+)
si:ch73-267c23.10 LOC108255296 coding upstream 220479 20633750 ~ 20650173 (+)
LOC113537838 NA coding upstream 249413 20618291 ~ 20621239 (+)
LOC113538122 LOC108255274 coding upstream 267588 20596752 ~ 20603064 (+)
ankrd52b ankrd52,LOC108255001 coding upstream 294292 20546892 ~ 20576360 (+)
smug1 smug1 coding downstream 14615 20896980 ~ 20901411 (+)
calcoco1b LOC108255279 coding downstream 150758 21033123 ~ 21046577 (+)
LOC113537842 LOC108255161 coding downstream 231069 21113434 ~ 21135134 (+)
faim2b LOC108255062 coding downstream 255444 21137809 ~ 21149284 (+)
lrp1aa LOC108281054,LOC108424569 coding downstream 328887 21211252 ~ 21371670 (+)
G311489 NA non-coding upstream 27197 20842278 ~ 20843455 (+)
G311508 NA non-coding upstream 65728 20767078 ~ 20804924 (+)
G311505 NA non-coding upstream 88292 20781762 ~ 20782360 (+)
G311504 LOC108255060 non-coding upstream 100824 20767626 ~ 20769828 (+)
G311506 NA non-coding upstream 179912 20685167 ~ 20690740 (+)
G311486 NA non-coding downstream 81 20882446 ~ 20884841 (+)
G311488 NA non-coding downstream 20947 20903312 ~ 20937881 (+)
G311482 hoxc12,hoxc12aa,hoxc12ba,LOC107578812,LOC108433365,LOC105912699,LOC105013633 non-coding downstream 44638 20927003 ~ 20983511 (+)
G311483 hoxc6ba,hoxc6,LOC108255268,LOC105016985 non-coding downstream 50313 20932678 ~ 20943629 (+)
G311591 hoxd9,LOC108281018,LOC106512889,LOC103134318 non-coding downstream 65956 20948321 ~ 20951538 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other upstream 9925 20807858 ~ 20860727 (+)
errfi1a errfi1 other upstream 693380 20119383 ~ 20177272 (+)
si:dkey-264d12.5 LOC108254816 other upstream 1002171 19848467 ~ 19868481 (+)
vamp3 vamp3 other upstream 1086727 19768983 ~ 19783925 (+)
phf13 phf13 other upstream 1353474 19508189 ~ 19517178 (+)

Expression


Co-expression Network