calcoco1b (LOC108255279)


Basic Information

Item Value
gene id calcoco1b
gene name LOC108255279
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 21033123 ~ 21046577 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314335.1
caaaaacaaacaaacaaacaaacaaacaagcaaaacaaacaaaaaaccctccAAGTAGTCTGAATTTCAACTGATTCAACATCAACAAGGACAGAAGCTCCAtcttctctctgactctctgaaACTGCTATGGAGAAGGAAGAGCGTTGGAAGGTGAAGTTCAGGAACGTGGCTCAGACGTATTTCCCTCAAACCAGAGTGGAATGTCGCTATACGCTGACCCGTGAACACAACTGGAGCTGCCGTGACTGGATCGGTCTCTTCAAGGTTGGCTGGACGTCCGTGAGAGATTATCACACTTACATTTGGGCTCTTGCTCCTGAAGATTACTCACTGGGCAAAGACGTAAACTGCAGCATCCTCTTCCACCCGTCTTATCTGCCGAGCCCCGGCCCTGCAGCGTACCAGTTTGTGTATGTAGACGAGCTGGGTGAGATTTGTGCAGTAAGTCCTCAGTTCACCTTCAGCGCTCCGAAACCTCTGGATGAACTGGTGACTCTGGAAGAGGAGAGAAACGGAGAGGAGGAAAACGAAGGAGACGACTTGCTGCTTGTTGTGCCAAGAGCTCAGATACTGCAGaGCCACCTGGAAGCCTGTCAGAAAGAACTGTCGCTGTTGCAGAAGAAGCTCGGAGCGTCCAGCATGGAActggagaaacacacagagagaatcGAAATGGAGAGGAAAGATTTCGAAATGGAAAGAGCGGAGATGAGGAATGAGATCAAAGACCTGAGAGAACGACTGAGATGCAGCATCGAGACGATCGAAAGAATGGAGGGCAAACAAAagGATGTGTTAAAGTCTcatgaaaacatttcagtggAGTTTAGCAGCTTGTTAACAGAAAGAGCCGAAAATCAGCAGCGAATTAAAGACCTGGAGGAGGATGTGAGCAGCTTAGTGCAACAGAAACAAGACACCGAGGCTGAGTTAGAGAGGatgaaagagagaataaaaaagcTGACGACGCAAAGGAAGGATGAGGAGGACGAGAGGAGGAAATTACAGATGGAGGGTAAACATTGTCGTGAGGAGATGCGGGTTCTTCAGGAGCGTCTGGAGAACAGCGAGCGCAGTGCAGAGGCGTTACGGCGAAACCTGAGTGAACTCGGAGCGCTGCAGAACCAGAACCAGGCCGAGCTTCACCAGATCCGACTGCAGGCGGCTCAAATGGCGCTGCAGCTCTCACAGGCCAACCTGAGCCTCCGAGAAGGACAAGCGGCGTGGGCTAAAGAACGAGAGAACCTGAGGAAGAATGCAGAGCTGGATAAGGAACAAGTCCAAAAACTGAGTCATGAGCTGCAGAAGAAGGAAGAATGGCTCCAGGAAGAACGAACAGAGCGAGAGAAACTGGAGCTGGAGCTTGGGAACGAGAAAGCATGCAACCGAGAGCTTCGTGCGAGTGTCCGAGCCATGCAGAAGGAGCGAGAGCAGCTGCAGCTGGAGAAACAGGAGCTTCTGGATCATATCCGAGTGTTCCGGCTGCGCATGGAGAGGGAGCGGGACGCTGCGTGGGCTGAAGCGGCTTCCGGCAGCAGGATTGTGGTGAACAGTGACGGCGCAGCGGCGACTCTGCAGAAATCTGACAGTAAGGAAGCTGAGAGACTGAATCTGCTCCAGACGGAGGAACCTGAGGAGAACAAACCCACGGAGCAGgagacacacagcacacacacggaTGTGGGAGAGAGCTGGGAGAGTGAACCACAGACTCCATCTGAGATCAAAGAGAATGCATGgagTGAGTTTGCTGATGCCCCCTTGTGGTGAGATGCGGCAATGACACacacgaaaacacacacacaggaaaaccTGATGCTGCTAGTTAATATCTGCAACAACACATCATGTGCTTGAGAGGAGTGTAACGTGTCAAAAACAGAATTGTGCAAgcctactctgtgtgtgtgtgtgtgtgtgtgatttatagtgtgaatgtgtgtgctatttattttctgaatgtgtgtgtgtgctatttattttctgaatgtgtgtgaggtttTTACTCACTGAATAAAACtttctgaatttattctgaCATTATAAATCCAATCAAATGTTAAGATGTAATCGGTTATCAGATTACTGTAGCGCAGAATAATCCACTAACTAGTTCATTGGCATAGAATCAGTTTATAATCAGTCGCGGTGTGAAGATCAGGTGATTTGGATCGATGCATTGATTTAAACTGATTCGAGGCtacaatcagaattaaattattattaaaaaaagaacaaaggctgaactggtgtgtaaaaattcctatatttaaactgatgtgtaaataatttaacagaCTAGCAAGCTGATTTGTCCGTAAACTTAAAATATTCCTTCTGTTCATCATCGTAGCAGATTCACTGTAGCTGAGTTATCGTTAAATATTGAACCTTTGCCTTATGAACTGAATCGTATGGAATGAAGTCTGAGGTTTACACTCCTAATAATTACTGCCTGAACACACTAACCAAGAGGTTTATAAATCCTTTTCTTTGTGAATGAAATTGTCaataaaatggtttatttattga

Function

NR:

description
calcium-binding and coiled-coil domain-containing protein 1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314335.1 True 2535 mRNA 0.46 14 21033123 21046577

Neighbor

gene id symbol gene type direction distance location
smug1 smug1 coding upstream 131712 20896980 ~ 20901411 (+)
slc2a10 slc2a10 coding upstream 371434 20654185 ~ 20661689 (+)
si:ch73-267c23.10 LOC108255296 coding upstream 382950 20633750 ~ 20650173 (+)
LOC113537838 NA coding upstream 411884 20618291 ~ 20621239 (+)
LOC113538122 LOC108255274 coding upstream 430059 20596752 ~ 20603064 (+)
LOC113537842 LOC108255161 coding downstream 66857 21113434 ~ 21135134 (+)
faim2b LOC108255062 coding downstream 91232 21137809 ~ 21149284 (+)
lrp1aa LOC108281054,LOC108424569 coding downstream 164675 21211252 ~ 21371670 (+)
alas1 alas1 coding downstream 364199 21410776 ~ 21435824 (+)
poc1a poc1a,LOC107747840 coding downstream 396722 21443299 ~ 21483333 (+)
LOC113538073 NA non-coding upstream 20663 21006350 ~ 21012460 (+)
G311482 hoxc12,hoxc12aa,hoxc12ba,LOC107578812,LOC108433365,LOC105912699,LOC105013633 non-coding upstream 49612 20927003 ~ 20983511 (+)
G311599 hoxc11,LOC106565461,LOC108276183 non-coding upstream 64258 20967715 ~ 20968865 (+)
G311591 hoxd9,LOC108281018,LOC106512889,LOC103134318 non-coding upstream 81585 20948321 ~ 20951538 (+)
G311483 hoxc6ba,hoxc6,LOC108255268,LOC105016985 non-coding upstream 89494 20932678 ~ 20943629 (+)
G311649 NA non-coding downstream 104221 21150798 ~ 21155101 (+)
G311652 NA non-coding downstream 112880 21159457 ~ 21164926 (+)
G311653 NA non-coding downstream 115341 21161918 ~ 21164080 (+)
LOC117599907 NA non-coding downstream 120403 21166980 ~ 21185039 (+)
G311665 NA non-coding downstream 144591 21191168 ~ 21191629 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other upstream 150758 20870652 ~ 20882365 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other upstream 172396 20807858 ~ 20860727 (+)
errfi1a errfi1 other upstream 855851 20119383 ~ 20177272 (+)
si:dkey-264d12.5 LOC108254816 other upstream 1164642 19848467 ~ 19868481 (+)
vamp3 vamp3 other upstream 1249198 19768983 ~ 19783925 (+)

Expression


Co-expression Network