tmcc2 (tmcc2,LOC107569750,LOC107690538,LOC107656904,LOC107572364)


Basic Information

Item Value
gene id tmcc2
gene name tmcc2,LOC107569750,LOC107690538,LOC107656904,LOC107572364
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 522376 ~ 530478 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314462.1
TCTCCctcctcccttctctctctctctctctctctctctctctttcttgctttctcccTCCATCACATGCGCCGGAGCAGCAGCAGAAGTGGTGGTGtttgtggtggtgtttgtgGTGGTGTTTGAGGGAGAGGCGGATTGCGAGGGTCATTGGACAGCAAGACGAGCAACTGAGACACAAAGCAGAGGAGAATAAAGacggagaggaggagaggagcgAGGGATGGCTGGGAGGAGGaggtgcagcactgagaagCTGTGGAGCGACAGATAAGCTCAGAGAGAACGACAGAGTGGATTTggggagggagggaaagagggagggagggatgatggagcgatagagagagggatgggCCTCACAAACAGAGCTGCACTCATCCGACTGATCCGGGACTAAATAGTATGctggATAAGAGTGAGGTGTCGACGCTGCCTTTGCCCCCCTCAGTGCCCCATGGCGGTTCAGATGGGAACATCAGCGTGGAGGGGGCGGGGTCTGTGTTGGGGGCGGGATCGTGGCAGGGGGAGGGCCCAGGGGAGGGGCAGCGAACACGCGCTGCTCTGGATCACCTGCAGCAGAAGATCCTGAAGATCACGGAGCAGATCCGTGTGGAACAGGAGGCGCGCGACAACAACGTGGCCGAGTATCTGAAACTCGCTCACAACGCCGACAAACAGCAAGCGTCACGCATCAAACACGTCTTCGAGAAGAAGAACCAGAAATCTGCGCAAACCATCGCACACCTGCACAAAAAACTCGAACACTATCATAAAAAGCTCAAAGAAATCGAGCagAACGGTTTGGCACGTCAGCCCAAAGACGTTTTGCGGGACATGCAACAGGGCCTGAAGGACGTAGGAGCCAATGTGCGGGCCGGCATCAGTGGCTTCGGAGGAGGCGTGGTCGAGGGTGTGAGGGGTGGAGTCTCTGCTCTCATACGCAACAAGTTCGGCAGCGCAGACAACATCGCCCACCTGAAGGACACTTTAGGACCTGCCCATACAGAGGACACGCCCCCTCGTGCACTCAGTGGCAGTGCCACGCTCGTCTCCAGCCCCAAGTATGGCAGCGACGACGAATGCTCCAGCGGCACCTCCGGGTCCGGGGCTGGGAGCAACTCCGGAGGGGGCGGGGCCATCTGCATGGGCAGCCCACGATTGGATggacaccatcaccatcatcatcaccatcatcacacgtCTGCGTCATGGGACACTCTCCTGGAGGGACTACAGGAGATCAAAGCCAGTCAGGTGCAGATGGAGGACGCAATGGAGGACATGAAGACACAACTACAGAGCGACTACTCCTACATGACCCAGTGTCTGCAGGAGGAGAGATAcaggtgtgtgtacagGTACGAGCGTTTGGAGGAGCAGCTAAATGACCTGAGTGAACTCCATCAAAACGAACTGAGCAACCTGAAACAGGAGCTGGCCAGCATGGAGGAGAAGGTGGCCTACCAGTCATATGAGAGAGCTCGGGacatacaggaggcAGTGGAGTCATGCCTGACGCGTGTCAGTAAGCTGGagttgcagcagcagcagcagcaggtggtGCAGTTGGAGGGGGTGGAGAACGCTAACGCTCGCGCTCTGCTCGGGAAGCTCATCAGCGTGCTGCTAGCTCTCATGGCCGTGCTGCTCGTCTTCGTCTCCACCGTGGCCAACTTCATCACCCCGCTCATGAAGACCCGCGCCCGCATCGCCTCCTCTGTTGCCTTCACCCTCTTCCTCATCACGCTCTGGAAGCACTGGGACTGGCTCGAACTCTGCTTCCTGTCTGGCTGAGTCACATGACCTTGGAGCTCCACGCCCTGCTACTGTGTCTGTGAAGAACTGATGAAGCTCCTCACGTAAACACTGCTACTACCGCGGAGACAGTAAGTGGGACACGTCCCATTTACACCGGATCTGTCTGGGTTTGGTCCATATGTGGAGTTCAGCACACTGTCGTGCCCTAAAACACTCATCAGATTTAAATACCGTATTTTTCAGACTATAAGCCGTGTTTTCTTGCCTgctatcatttatatttaacctAATCGTAGGTTGcacatttatttgtgtatttacgGTAGGTGAGATGTTCCAGCAGGTTAAGGATGGCTAAAGGTTCAGGTTCACTACCTACTGTTAGCTTGGTGCTAACATCATACTAAAAACCTTCAGTAGCTGAAATTAGCATTATTGTAGCCGGTGGTTGAACCGTACTGAAACTCCCGGGGGTCCCACACCACAGTGCACGCTGGACTCCCACGTCGGATCTCCAGAACCGAGTGAACAGGACTGACCTGATCTGAATTCAATTGGTCAAATCTGCACTAAGGTGGCTAGCTCCTTTCAGCGCGCTAGTTCTGCTTTAAAACAATCCAGTGCTGCATAGATATGAATACCGAGATATCGCATTCGCTGCCGATTGCTGTTTCGAAGAATCCGCCATATTGGCGCTCTACACTCTCAACACACAGTTAGTGCTGCAGTGTCTATTATGTGAttgaataatagaaaaataaaggttttatttgGACTTTGGTCTGTAATGGAAGACTGTTATCAGCAGTAGTGTTTATAAATGATGCAATATTATAGGACTTCATTCCGGTTCAACAGTGACTCGGTTGCAGCGCTAGTGCAGTCGTAATAACCGTAAACCATACTCTAAACCTTACACTTCTAGTAACAGTCTTGTGTCAGAGTGCATGATGTCGACAACTATGTACATGTATCAGTGACAATCGTGAACAACACCAcgtaaattattaaaataaaacactgcttgtGAAGTGTAAAGTCCACCGTGTACCGCTCCAATGCGGAGGCACTGCAGGACGCGACAGTGCGTCACAGCCAGCCAGCGCAGTGTCCATGTATTTATACCGTATCTATGCAGTGCTGAGCGACAGCAGCACTAACACTAGGGGGCGCTGAAGCGCTGTTTAGACCGAGTATGACCATAAACTAAATTAATGCGACTTATAGTCCAGGAAATATGGCAGGTGTGTTAGAGAGCATACAGCACCAGAGACCGATTAGCTTTACACTCTTTCATCTGACCTTCTGTAAGAGAAGAAAGGATGATGGACACACGGAAAGGGcgtctatatattttttcaccTTCCATGAGAATTGAATGTTGTTGCATGAGATCAGGATTTTGTCTGTTATCTGTGTGTGAAATAGCGACGGCAGATTTAAGGTTGAAACACTTGATTCTGGGcctttttcagcattttatctgtttctgtTCTTATAAAGTCTCGGCTTTCATACTGCGTCGATATTATTGTGAAATACAGTCAGTAAATACGTCCGTGAAGCAGCTCAGCAGCACGCAGTGTTCGGCTGTAGAAGCTAGCGGGCTGCGCAATACGTCGATCAGTAACCCTGCACTTTAGCGTAACCTCATTAGCAGCAGCTACATGACTACAAAATGTGCTAGCAAGCAAACTAGTGCTAATGAAACTATTGTATTGTGAAATTAAACCCAGTAGCCatgtttgctagcaagctagccgCTAAACCAGCTAGCAGTATGTCACTGTCTCAGATTAGTAAGCAATATGCCACTTTGGAAGTTGTAACTCAGCTAAACCACTTCTAATCATTCCAGATGtttgaataaatgtgttttttgttgtgttgttggaTTGTGTTGCAGTGGTGAAGCAAAActtgtgttatttgtgttagcagttgatgctaagtattttttttgtaatttgccGACACacctgaggtaaatgttgatgttctggATGGTTCTACGTCTTTACATCGTCTCTTTAAAAGACTTTCTTGCTAGCTAAATTGTTAGCCTTGGTTTGTAGCTAGCTTTTGCTTGAGGACTGTATTTtctagttgcctagcaacagtttTGATCACATCACTACTTTACATGCAACATCTTGGCTAATATTTAGAGTAgagttaataatataatattggaATCAGCAGAAAGCCGAGACTTTTAACCTCACAGCGATGGCAGTCGGGTGTTTTCGTGAATGTTTCAGCGTTCTGCATGACGTCATACCGCCGAGTTCGTCCACGTTTACGTCCATCATGATGACGAAGCTGCCACTGAGTACATCCAGCATCACATTACctgttttataaagtttatatttGTGGCCGTcggttacaaaaaaaaaaccaaaccagACTGTATGTGTATTTCGCTTTACGTCCTGGGAGAACTCTCGGGTCCTCAGCGCTCTGATCAGTAACTCTGTCCATCACAGCTGTTTTATAATCGCAGGACTGTACAGAGTCTCAGTTACACCATCAGCGCGCATGTTCACTCActtttcatatttataccctGTTTGCTAAAATCCACCAAATACTGCACTGTAATCTTAATAAACACGTTTACA
>XM_034314463.1
TCCctcctcccttctctctctctctctctctctctctctctttcttgctttctcccTCCATCACATGCGCCGGAGCAGCAGCAGAAGTGGTGGTGtttgtggtggtgtttgtgGTGGTGTTTGAGGGAGAGGCGGATTGCGAGGGTCATTGGACAGCAAGACGAGCAACTGAGACACAAAGCAGAGGAGAATAAAGacggagaggaggagaggagcgAGGGATGGCTGGGAGGAGGaggtgcagcactgagaagCTGTGGAGCGACAGATAAGCTCAGAGAGAACGACAGAGTGGATTTggggagggagggaaagagggagggagggatgatggagcgatagagagagggatgggCCTCACAAACAGAGCTGCACTCATCCGACTGATCCGGGACTAAATAGTATGctggATAAGAGTGAGGTGTCGACGCTGCCTTTGCCCCCCTCAGTGCCCCATGGCGGTTCAGATGGGAACATCAGCGTGGAGGGGGCGGGGTCTGTGTTGGGGGCGGGATCGTGGCAGGGGGAGGGCCCAGGGGAGGGGCAGCGAACACGCGCTGCTCTGGATCACCTGCAGCAGAAGATCCTGAAGATCACGGAGCAGATCCGTGTGGAACAGGAGGCGCGCGACAACAACGTGGCCGAGTATCTGAAACTCGCTCACAACGCCGACAAACAGCAAGCGTCACGCATCAAACACGTCTTCGAGAAGAAGAACCAGAAATCTGCGCAAACCATCGCACACCTGCACAAAAAACTCGAACACTATCATAAAAAGCTCAAAGAAATCGAGCagAACGGTTTGGCACGTCAGCCCAAAGACGTTTTGCGGGACATGCAACAGGGCCTGAAGGACGTAGGAGCCAATGTGCGGGCCGGCATCAGTGGCTTCGGAGGAGGCGTGGTCGAGGGTGTGAGGGGTGGAGTCTCTGCTCTCATACGCAACAAGTTCGGCAGCGCAGACAACATCGCCCACCTGAAGGACACTTTAGGACCTGCCCATACAGAGGACACGCCCCCTCGTGCACTCAGTGGCAGTGCCACGCTCGTCTCCAGCCCCAAGTATGGCAGCGACGACGAATGCTCCAGCGGCACCTCCGGGTCCGGGGCTGGGAGCAACTCCGGAGGGGGCGGGGCCATCTGCATGGGCAGCCCACGATTGGATggacaccatcaccatcatcatcaccatcatcacacgtCTGCGTCATGGGACACTCTCCTGGAGGGACTACAGGAGATCAAAGCCAGTCAGGTGCAGATGGAGGACGCAATGGAGGACATGAAGACACAACTACAGAGCGACTACTCCTACATGACCCAGTGTCTGCAGGAGGAGAGATAcagGTACGAGCGTTTGGAGGAGCAGCTAAATGACCTGAGTGAACTCCATCAAAACGAACTGAGCAACCTGAAACAGGAGCTGGCCAGCATGGAGGAGAAGGTGGCCTACCAGTCATATGAGAGAGCTCGGGacatacaggaggcAGTGGAGTCATGCCTGACGCGTGTCAGTAAGCTGGagttgcagcagcagcagcagcaggtggtGCAGTTGGAGGGGGTGGAGAACGCTAACGCTCGCGCTCTGCTCGGGAAGCTCATCAGCGTGCTGCTAGCTCTCATGGCCGTGCTGCTCGTCTTCGTCTCCACCGTGGCCAACTTCATCACCCCGCTCATGAAGACCCGCGCCCGCATCGCCTCCTCTGTTGCCTTCACCCTCTTCCTCATCACGCTCTGGAAGCACTGGGACTGGCTCGAACTCTGCTTCCTGTCTGGCTGAGTCACATGACCTTGGAGCTCCACGCCCTGCTACTGTGTCTGTGAAGAACTGATGAAGCTCCTCACGTAAACACTGCTACTACCGCGGAGACAGTAAGTGGGACACGTCCCATTTACACCGGATCTGTCTGGGTTTGGTCCATATGTGGAGTTCAGCACACTGTCGTGCCCTAAAACACTCATCAGATTTAAATACCGTATTTTTCAGACTATAAGCCGTGTTTTCTTGCCTgctatcatttatatttaacctAATCGTAGGTTGcacatttatttgtgtatttacgGTAGGTGAGATGTTCCAGCAGGTTAAGGATGGCTAAAGGTTCAGGTTCACTACCTACTGTTAGCTTGGTGCTAACATCATACTAAAAACCTTCAGTAGCTGAAATTAGCATTATTGTAGCCGGTGGTTGAACCGTACTGAAACTCCCGGGGGTCCCACACCACAGTGCACGCTGGACTCCCACGTCGGATCTCCAGAACCGAGTGAACAGGACTGACCTGATCTGAATTCAATTGGTCAAATCTGCACTAAGGTGGCTAGCTCCTTTCAGCGCGCTAGTTCTGCTTTAAAACAATCCAGTGCTGCATAGATATGAATACCGAGATATCGCATTCGCTGCCGATTGCTGTTTCGAAGAATCCGCCATATTGGCGCTCTACACTCTCAACACACAGTTAGTGCTGCAGTGTCTATTATGTGAttgaataatagaaaaataaaggttttatttgGACTTTGGTCTGTAATGGAAGACTGTTATCAGCAGTAGTGTTTATAAATGATGCAATATTATAGGACTTCATTCCGGTTCAACAGTGACTCGGTTGCAGCGCTAGTGCAGTCGTAATAACCGTAAACCATACTCTAAACCTTACACTTCTAGTAACAGTCTTGTGTCAGAGTGCATGATGTCGACAACTATGTACATGTATCAGTGACAATCGTGAACAACACCAcgtaaattattaaaataaaacactgcttgtGAAGTGTAAAGTCCACCGTGTACCGCTCCAATGCGGAGGCACTGCAGGACGCGACAGTGCGTCACAGCCAGCCAGCGCAGTGTCCATGTATTTATACCGTATCTATGCAGTGCTGAGCGACAGCAGCACTAACACTAGGGGGCGCTGAAGCGCTGTTTAGACCGAGTATGACCATAAACTAAATTAATGCGACTTATAGTCCAGGAAATATGGCAGGTGTGTTAGAGAGCATACAGCACCAGAGACCGATTAGCTTTACACTCTTTCATCTGACCTTCTGTAAGAGAAGAAAGGATGATGGACACACGGAAAGGGcgtctatatattttttcaccTTCCATGAGAATTGAATGTTGTTGCATGAGATCAGGATTTTGTCTGTTATCTGTGTGTGAAATAGCGACGGCAGATTTAAGGTTGAAACACTTGATTCTGGGcctttttcagcattttatctgtttctgtTCTTATAAAGTCTCGGCTTTCATACTGCGTCGATATTATTGTGAAATACAGTCAGTAAATACGTCCGTGAAGCAGCTCAGCAGCACGCAGTGTTCGGCTGTAGAAGCTAGCGGGCTGCGCAATACGTCGATCAGTAACCCTGCACTTTAGCGTAACCTCATTAGCAGCAGCTACATGACTACAAAATGTGCTAGCAAGCAAACTAGTGCTAATGAAACTATTGTATTGTGAAATTAAACCCAGTAGCCatgtttgctagcaagctagccgCTAAACCAGCTAGCAGTATGTCACTGTCTCAGATTAGTAAGCAATATGCCACTTTGGAAGTTGTAACTCAGCTAAACCACTTCTAATCATTCCAGATGtttgaataaatgtgttttttgttgtgttgttggaTTGTGTTGCAGTGGTGAAGCAAAActtgtgttatttgtgttagcagttgatgctaagtattttttttgtaatttgccGACACacctgaggtaaatgttgatgttctggATGGTTCTACGTCTTTACATCGTCTCTTTAAAAGACTTTCTTGCTAGCTAAATTGTTAGCCTTGGTTTGTAGCTAGCTTTTGCTTGAGGACTGTATTTtctagttgcctagcaacagtttTGATCACATCACTACTTTACATGCAACATCTTGGCTAATATTTAGAGTAgagttaataatataatattggaATCAGCAGAAAGCCGAGACTTTTAACCTCACAGCGATGGCAGTCGGGTGTTTTCGTGAATGTTTCAGCGTTCTGCATGACGTCATACCGCCGAGTTCGTCCACGTTTACGTCCATCATGATGACGAAGCTGCCACTGAGTACATCCAGCATCACATTACctgttttataaagtttatatttGTGGCCGTcggttacaaaaaaaaaaccaaaccagACTGTATGTGTATTTCGCTTTACGTCCTGGGAGAACTCTCGGGTCCTCAGCGCTCTGATCAGTAACTCTGTCCATCACAGCTGTTTTATAATCGCAGGACTGTACAGAGTCTCAGTTACACCATCAGCGCGCATGTTCACTCActtttcatatttataccctGTTTGCTAAAATCCACCAAATACTGCACTGTAATCTTAATAAACACGTTTACA

Function

symbol description
tmcc2 Predicted to be involved in amyloid precursor protein metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system. Orthologous to human TMCC2 (transmembrane and coiled-coil domain family 2).

NR:

description
transmembrane and coiled-coil domains protein 2-like isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314462.1 True 4385 mRNA 0.49 5 522376 530478
XM_034314463.1 False 4371 mRNA 0.49 5 522378 530478

Neighbor

gene id symbol gene type direction distance location
srsf3b srsf3,srsf3b,LOC107569752,LOC107690536,LOC107656901 coding upstream 14023 503469 ~ 508353 (+)
apobec2a LOC108281085 coding upstream 26739 492045 ~ 495637 (+)
arl8a arl8a,LOC107671521,LOC107722853,LOC107569762,LOC107750681 coding upstream 83199 431512 ~ 439177 (+)
btg2 LOC108255010 coding upstream 112926 406108 ~ 409450 (+)
zgc:153675 LOC108255011 coding upstream 141833 376562 ~ 380543 (+)
bysl bysl coding downstream 11559 542037 ~ 547617 (+)
ccnd3 ccnd3 coding downstream 18355 548833 ~ 554712 (+)
dstyk dstyk coding downstream 41110 571588 ~ 607621 (+)
nbl1 nbl1,LOC105897883 coding downstream 157473 687951 ~ 696115 (+)
LOC113539512 LOC108281094 coding downstream 168548 699026 ~ 703360 (+)
G299528 NA non-coding upstream 268144 251723 ~ 254232 (+)
G299522 NA non-coding upstream 285886 236076 ~ 236490 (+)
G299482 NA non-coding upstream 304967 209994 ~ 217409 (+)
G299486 NA non-coding upstream 317464 203812 ~ 204912 (+)
G299503 NA non-coding upstream 343711 173753 ~ 178665 (+)
G299618 NA non-coding downstream 34798 565276 ~ 565508 (+)
G299625 NA non-coding downstream 71080 601558 ~ 602113 (+)
G299679 NA non-coding downstream 277681 808159 ~ 809350 (+)
G299708 NA non-coding downstream 307885 838363 ~ 838915 (+)
G299695 NA non-coding downstream 314990 845468 ~ 847722 (+)
cdkn1a cdkn1a other upstream 1433 515540 ~ 520943 (+)
dram2b NA other upstream 162118 351588 ~ 360258 (+)
LOC113525237 LOC108281078 other upstream 333059 165615 ~ 189317 (+)
LOC117599902 NA other downstream 148439 678917 ~ 726922 (+)
mfap2 mfap2 other downstream 228031 758509 ~ 805098 (+)
LOC113539702 LOC108281106 other downstream 312375 842853 ~ 844870 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other downstream 332780 863258 ~ 872756 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other downstream 917964 1448442 ~ 1494645 (+)

Expression


Co-expression Network