LOC117599926 (magi1)


Basic Information

Item Value
gene id LOC117599926
gene name magi1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 3801729 ~ 3806127 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314480.1
ATGAAAGCATCCTTGTACCCTCTCCACCACGATACTGTAGTAGAGCTGTTCACGGATTTTGCCACGCATAGTCAACGTCCAAAGACGCTTCACGATGGCCGCTCCACAAGCCACAGCCAGCGCGAGAAACGAAAAGGCAGGAGAGGCTGGTTTCTTCCAAAACCAGACCACGACGGCAACGACGACAACAACGGCCCCGTCAGCGGGGCTCAAACTGTTTCGGAAGTGAACACAGCACCTCCTGACAGTCAGCCCCACCCGCCATTGGATTCCAGCTCTCCACAAGACCTTCATAAAACATCCCGGAATGAGGACAGGAGGACACGCGAGTCAGGTCAGCGCACGCACGGCCACCGCTCCAaccatcaccatagcaaccacagaCACCGCTCCCCAGACAAAAGGGGCAGGAACAGGCACCATAATAAGAAAAGTAGCAGCAGTGCTAATAAGAAGAGAGGCGAGAAGAGGTACAGCAAGGATGATTCGTACCACCATCAGCACCACCGGAGGCACCATTCTCCAGAGAGGAGGCGCCGGGCAAGGAGCGCCGAGAACACCCTGGACAGCCGACACGAACGTCGGTACGGCCGATCACCAGAAAGACGCCATCATCGCCACTCCTCTCCTCAAAGGCACCATTCACCACATCGGTCAGGGCACCGCCATAGGTCCCCTCACCGTCACAGATCACCATATCGCTCCCCACATCGCTCCAGATACCATTCTCCGCATCGGCAATCCAACCCTTCTTCTGACAGACCGCGCAATGGCAAACCACAGCGGGATGAGGATGTCGGCTTGAAGGAGCCTCCATCTCCTGAGACTTCTTCCCACTTGGACAGTGTTCTGAATGAGCTGCCTGCAATGGATCGGCTAAACCGCGAGAGCCCCTTGCCACGGATGACATATGATGGTTTAGAACGTGGCAACGGCCTGACATTACCAGGAAAGTCCTACAGTCGTCTGAACAGTAACACCACCCTCCCCCGACAGTTTGTAAACAATGGTAATAGCCTCCCGCATTTCTATGATCGTTGGAACCGTGATGACGTCAACCCCCGGCAGTCCTATGGCCACTTGAACCATGATGACACACTACCCCGACCGTCATATGACCGTGTGAACAGAAATGAAGCTCTTCGCCGAGAGTCCTACGACAGTTTGCCCCAAAGCGTTCCTTTTCCCAGAGAGTCAACGGACCACTTTTCGACAATGGAGCGCTCATACAATGGGGACAGCCTGCCCAGGAGAACCTACCAGGACCAGAGCCTTCCCCGCATCAGAACCCCTGACTCAGATACAGCTTTCCAGAAGTACAGTTCGCTGTTAAGGGGTCGCTCTCCCGAGAGAAAGAGCCGATTATCCCGGTCGGAGACTCCAGAAGCAACCTCCTACAGAGCCAGGAGCCTTGACCCAGACATGTTGCCTGCAAGAGGTTCCCGAAACACGGTAGACTCAGAGGAGGAAGACAAGGAAAGCAGTGTAAGAAATTACTACAGCAAACTCAAGTCCAATTATGGCAAAGTCAACAACCCACTCCCCGAGCCCAGGAGGAAGGCCTACAAAGAGAACTCCAAAGATCTCAGCATCTGACAGACTGGTGCAGAACAGCAAACATGCCCTCGCTCCATAAAAGCCCTCATCTGAGGACCCTGTATACTATGCTATGAATTTGACATTCCTGTGTTTTCCTAGACAGATTACTTGACAACTTGTAACAAACAGCGGAAGAATGGTTTTTGCTGTACGTTCCAGGAATTGTtggttgtttctttttttttttttttttcctacaattTCACAAACAGTTCTACATCTATCAGAGATTGACGACTATGTATAAAGAAAACGATTATGTGCCTAATAGTACCATTCTtgatggtttttattttataaagggCAGTCTTTTGAACTACTGTCTGATTATAGTATTTTTCGGTTTCAGAGACCACACCCATGCACCGAGCATCTCTCCTCACCAGGTGCTCACATGTATGCTGTGCATGTCTTTACACTTTCAGTgtctttcttctttatttcattctttctctccctcGGTGCCaatgatttttacacatttgaCCAGAGTATAGCACAAGTCTGcattcatttgtatatttttgacAGTTTGCAGTACGTGTACATTCAGAGGTGATCATTTTACGAGAATGAAGGGAACATGAAGTTAAAATACGATAATgtgagaataaaatatatatacacaa

Function

symbol description
magi1 Enables alpha-actinin binding activity. Involved in positive regulation of cell-cell adhesion. Located in several cellular components, including cell-cell junction; nuclear lumen; and plasma membrane.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314480.1 True 2228 mRNA 0.50 3 3801729 3806127

Neighbor

gene id symbol gene type direction distance location
lrig1 lrig1 coding upstream 242082 3519749 ~ 3559647 (+)
suclg2 suclg2,LOC107729402,LOC107753779,LOC107699794 coding upstream 416315 3288732 ~ 3385414 (+)
tafa4b fam19a4,fam19a2,LOC107655986,LOC107558879,LOC104966247,LOC108231490 coding upstream 788037 2965364 ~ 3013692 (+)
eogt eogt,LOC107729408 coding upstream 843024 2941857 ~ 2958705 (+)
tmf1 tmf1,LOC107729398,LOC107600287 coding upstream 860463 2925133 ~ 2941266 (+)
prickle2b prickle2,LOC107590162,LOC107739290,LOC107728631,LOC107656034,LOC107551119 coding downstream 109459 3915586 ~ 4011768 (+)
psmd6 psmd6 coding downstream 231645 4037772 ~ 4042092 (+)
thoc7 thoc7,LOC107696849,LOC107739288,LOC107551027,LOC107728626 coding downstream 274309 4080436 ~ 4085015 (+)
fezf2 fezf2 coding downstream 483445 4289572 ~ 4292368 (+)
fgd5a LOC108255103,LOC108435806 coding downstream 528038 4334165 ~ 4380659 (+)
G301506 NA non-coding upstream 271370 3521792 ~ 3530359 (+)
G301487 NA non-coding upstream 348224 3452671 ~ 3453505 (+)
LOC113539486 NA non-coding upstream 740883 3028940 ~ 3060846 (+)
G300775 rab7a,LOC103385930,LOC101061812,LOC107385713,LOC107385419,LOC106582926,LOC108254780 non-coding upstream 893675 2906708 ~ 2908054 (+)
G300843 NA non-coding upstream 1064821 2736478 ~ 2736908 (+)
G301792 NA non-coding downstream 112203 3918330 ~ 3918531 (+)
G301805 NA non-coding downstream 126980 3933107 ~ 3933350 (+)
G301852 NA non-coding downstream 222882 4029009 ~ 4029270 (+)
G301857 NA non-coding downstream 236963 4043090 ~ 4043866 (+)
G301881 NA non-coding downstream 326153 4132280 ~ 4210261 (+)
LOC113539549 LOC108254930 other upstream 1078148 2715662 ~ 2723581 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other upstream 1612812 2141522 ~ 2188917 (+)
mon1a mon1a other upstream 1741088 2053083 ~ 2060641 (+)
LOC117599925 NA other upstream 2302557 1496860 ~ 1499172 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other upstream 2307084 1448442 ~ 1494645 (+)
LOC113539463 adamts9 other downstream 44434 3850561 ~ 3913086 (+)
cadpsa cadps other downstream 352105 4158232 ~ 4278673 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other downstream 644913 4451040 ~ 4469196 (+)
ptprga ptprg,LOC107752167,LOC106583020 other downstream 1404517 5210644 ~ 5471561 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other downstream 2394319 6200446 ~ 6293749 (+)

Expression


Co-expression Network