rnpep


Basic Information

Item Value
gene id rnpep
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 9347088 ~ 9350893 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314482.1
ATTGCATAGGAAGCTATCAATATTAGATGGAGGCTGAGAAGTACAAATTCTGATAGAAGAGAGTAACATACTGTGAAATTATCTTGTGATTCTCAATTAAGATGCCAGGACTGGAGCCAGAGCAGACAGCTGACAAGAGATTGCAGTTCCTGTACGCCTCAGGTTTTCCTGTGCTAAATCGGAGTATGCTGCTCACCTGGTGCATGTATATTCTTCAGGTGTGCTGGCTGGACCAAGAACAGACTGCAGGAAGGGTCACGCCAATCATTTTTACCCAAGGCCAGGTTGTGCTCAATGCTGTAAAAATTCTGCATTCTGCAGCATTAAAGGTGCCTGAACACTACACAGTGGTTATGAGTGCCACCAAGTGGGAACACTTGGAATCAGACAACAACTTCGTATTCAGAATGGATCAGCCCATTCCTGTCTACTTTGTGGCACTGGCTGTAGGAGACTTGGTATATGCTGAGGTGGGCCCCAGGTTAGCAGCACACACTCAAGATAATTTGTATGATGTGCTGTTCATGCCTCCATCATTTCCATTAGGAGGAATGGAGAATGCCTGCCTGACCTTTCTCACTCCATGTATTTTGGTGTGTAACTGCTCacttgatgatgtcatcatccCTGAGATCTGCCATAGCTGGTTTGGAAACTTGGTTATTAATGCCAGCTGGGGAGATTTCTGGCTCAATGAGGGCTTCACAATATATTCCCAATGCCGAATCAGCACAGAGGTAAATGGGGAGGCCTATACCTGTCTACAGGCAGCAACAGGTAGAGCTTTACTGAGACAACACATGGACAACACTAAAGAAGTCCGTCCTCTTAACAAACTACATGTCACGATTAAACCAGGTCAGCAAATATGTTCTCATCTTTTCCCCCTtataaatatgtattttctaTTGAATATTTATGATGTAAATTGCAACTACTGCCCCCGGAGGGCATATGTGGTCAAGTTTAAGTTTTGCAGTGTGATTGCTGAGGATATTCTCGAGTTCTTCCTAGATTATTTCCCTGACCTCAAAATGAAGATCCCCCACAAAGCTGAAGGTTTGGACTTTGATAGCTGGCTGAACATTCCTGGTTGGCCCCCATACATACCAGATCTCTTTATGAAGCCAGCTGATCAACTGGCTGAACTCTAgggaaacaaaaatgtagatatTATTACCATCTGTAAAACTAACATCCAGTTGTGTTACACTTATTAAACTGTCTACTTTTGGGACAAGATCCTTGAGAAATCTCCACTTCCTGATTGTACCACTAATATTAACTTTGTTTAGGCCATATTTATAGCTGATGTATGCTCTTTTTGAATTAGACTTGAATTGATATTGGTATTAATGACGTGATGCGTTTCCCGTGTTtaccattttgtttgtttatgtgagCCAATCTTGATTGTTTTGATTCAAAAGTGTTTGTGACTGTACTGGAG

Function

NR:

description
PREDICTED: aminopeptidase B isoform X1

GO:

id name namespace
GO:0008233 peptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314482.1 True 1450 mRNA 0.42 9 9347088 9350893

Neighbor

gene id symbol gene type direction distance location
inavab LOC108254772,LOC108410711 coding upstream 11709 9316398 ~ 9335379 (+)
syt6b syt6,LOC107727826,LOC107560238,LOC107655078,LOC107749496 coding upstream 109759 9228442 ~ 9237329 (+)
nfs1 nfs1,LOC107601922,LOC107559867 coding upstream 420875 8918438 ~ 8926213 (+)
rbm39a rbm39,LOC107727188,LOC107685714,LOC107602070 coding upstream 438557 8901673 ~ 8908531 (+)
rem1 rem1,LOC108255017,LOC108411381,LOC107727768,LOC107655086,LOC105017066,LOC107727184,LOC107554936,LOC107685743 coding upstream 467412 8869019 ~ 8879676 (+)
LOC113539578 LOC108410710,LOC107727873,LOC107560790,LOC107685706,LOC107655073,LOC107749489 coding downstream 7926 9358819 ~ 9379985 (+)
rabif rabif,LOC107601129 coding downstream 56632 9407525 ~ 9409888 (+)
kdm5ba kdm5b,LOC108254769,LOC107600688,LOC107749493 coding downstream 59359 9410252 ~ 9435881 (+)
ipo9 ipo9 coding downstream 86340 9437233 ~ 9488029 (+)
lmod1b lmod1 coding downstream 217158 9568051 ~ 9573289 (+)
LOC113539732 NA non-coding upstream 34297 9311720 ~ 9312791 (+)
G304898 NA non-coding upstream 49510 9297369 ~ 9297578 (+)
LOC113539427 NA non-coding upstream 325836 9019600 ~ 9021252 (+)
LOC113539633 NA non-coding upstream 330094 9004691 ~ 9016994 (+)
G304669 NA non-coding upstream 407401 8939059 ~ 8939687 (+)
G304917 NA non-coding downstream 9437 9360330 ~ 9365833 (+)
G304924 NA non-coding downstream 44682 9395575 ~ 9395926 (+)
G304926 NA non-coding downstream 53158 9404051 ~ 9404267 (+)
G304927 NA non-coding downstream 75150 9426043 ~ 9427519 (+)
G304947 NA non-coding downstream 210492 9561385 ~ 9561606 (+)
nfasca nfasc other upstream 785386 8481095 ~ 8561702 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other upstream 1320159 7974591 ~ 8026929 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other upstream 2567730 6663968 ~ 6779358 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other upstream 2844452 6498060 ~ 6502636 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other upstream 3053339 6200446 ~ 6293749 (+)
shisa4 shisa4,LOC108254774,LOC107552307 other downstream 185232 9536125 ~ 9551761 (+)
G305515 NA other downstream 1161778 10512671 ~ 10513270 (+)
LOC113539694 LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other downstream 1413381 10764274 ~ 10773442 (+)
G305727 NA other downstream 1760846 11111739 ~ 11112518 (+)
unm_sa1614 LOC108254916,LOC108424671,LOC107566077,LOC107691346 other downstream 1790343 11141236 ~ 11178473 (+)

Expression


Co-expression Network