faim2b (LOC108255062)


Basic Information

Item Value
gene id faim2b
gene name LOC108255062
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 21137809 ~ 21149284 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034314489.1
ATGACTCAGAAGAAGgTGTCACCTGAAGTCACGACTGTAGCTGGCAATTTGCCTCCGAGCTACGAAGAAGCCAACGCAGGATGCCCCGGTTACAGTTACAGCGATGGTGCATTTTTATGGGACGATAAAAACATCAGACGCGTTTTCGTGCGCAAGGTTTATTCGATTCTGATGCTGCAGCTGGTTGTTACTCTGGCTATTGTGTCTCTTTTCACCTTTTATGAACCGGTGAGGTTTTATATTCAGACTCATCCTGCGCTTTACTCCACGTCCAGcCTCCTGTTTCTTGTCACCTATTTAATGTTGGCTTGCTGTGGAGATTTAAGGAGGCAGTTTCCCTGGAATCTCATTCTGCTCTCAGTCTTTacactgTGCATGGCTTTCATGCTGGGTTTCATTTCCAGCTTCTACAACACGAGGTCAGTGATCTTGTGTCTCGGCATCAcggttgtggtgtgtgtgtgtgtcaccgtCTTCAGCTTTCAGACGAAGATCGACGTCACGTCGTTCCAGGGCCTTCTGCTGAACCTCTGCCTGGTGCTGCTCGTCTGCACTCTCGTCATGGGATTTGTCGTCCCGTTCGGATACttTTTGGCATTTGACACTCAGCTGTTGATGGGGAACAGACAGTACGCCCTGAGTCCTGAGGAGTACATCTTCGCCGCTCTCACTCTCTACCTcgacattgtttatattttcactCACATTTTACGGCTGTTCGGTGACAGCAACgaataa

Function

NR:

description
protein lifeguard 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034314489.1 True 738 mRNA 0.49 11 21137809 21149284

Neighbor

gene id symbol gene type direction distance location
LOC113537842 LOC108255161 coding upstream 2675 21113434 ~ 21135134 (+)
calcoco1b LOC108255279 coding upstream 91232 21033123 ~ 21046577 (+)
smug1 smug1 coding upstream 236398 20896980 ~ 20901411 (+)
slc2a10 slc2a10 coding upstream 476120 20654185 ~ 20661689 (+)
si:ch73-267c23.10 LOC108255296 coding upstream 487636 20633750 ~ 20650173 (+)
lrp1aa LOC108281054,LOC108424569 coding downstream 61968 21211252 ~ 21371670 (+)
alas1 alas1 coding downstream 261492 21410776 ~ 21435824 (+)
poc1a poc1a,LOC107747840 coding downstream 294015 21443299 ~ 21483333 (+)
dusp7 dusp7,LOC107697567,LOC107677944 coding downstream 342606 21491890 ~ 21510998 (+)
rpl29 NA coding downstream 393470 21542754 ~ 21545334 (+)
LOC113538073 NA non-coding upstream 125349 21006350 ~ 21012460 (+)
G311482 hoxc12,hoxc12aa,hoxc12ba,LOC107578812,LOC108433365,LOC105912699,LOC105013633 non-coding upstream 154298 20927003 ~ 20983511 (+)
G311649 NA non-coding downstream 1514 21150798 ~ 21155101 (+)
G311652 NA non-coding downstream 10173 21159457 ~ 21164926 (+)
G311653 NA non-coding downstream 12634 21161918 ~ 21164080 (+)
LOC117599907 NA non-coding downstream 17696 21166980 ~ 21185039 (+)
G311665 NA non-coding downstream 41884 21191168 ~ 21191629 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other upstream 255444 20870652 ~ 20882365 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other upstream 277082 20807858 ~ 20860727 (+)
errfi1a errfi1 other upstream 960537 20119383 ~ 20177272 (+)
si:dkey-264d12.5 LOC108254816 other upstream 1269328 19848467 ~ 19868481 (+)
vamp3 vamp3 other upstream 1353884 19768983 ~ 19783925 (+)

Expression


Co-expression Network