LOC113537967


Basic Information

Item Value
gene id LOC113537967
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 15393609 ~ 15407641 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403808.2
agctaaactctgcaggaaGTTTGGAACGCTTACATTTACTCACTGTCTACAAAATACCTGAAAATATCAAATCTTATGCACTTCATTTCCCAAAAGGAGAGATCTGATCCCAAGGGAAGCTGAAACGGGACACTTCAGAGGCCTTTGATATGAGAAaaaaaagaacTGCATCCAGTTCTTCAGTAATGCTACGCAAACTTTCTGATATGATTTACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403808.2 True 216 lncRNA 0.38 4 15393609 15407641

Neighbor

gene id symbol gene type direction distance location
rbm15b rbm15b coding upstream 4481 15385294 ~ 15389128 (+)
manf manf,LOC107592842,LOC107691893,LOC107750980,LOC106583751 coding upstream 10661 15375847 ~ 15382948 (+)
dock3 dock3 coding upstream 25479 15138351 ~ 15368130 (+)
si:dkey-49n23.1 si:dkey-49n23.1,LOC108255172,LOC108436691,LOC107719940,LOC107571036 coding upstream 267211 15064877 ~ 15126398 (+)
ssuh2.1 LOC108255262,LOC108436692 coding upstream 331609 15045544 ~ 15062000 (+)
nicn1 nicn1 coding downstream 455815 15863456 ~ 15877266 (+)
ccdc66 NA coding downstream 1265179 16672820 ~ 16687543 (+)
atp6ap1la atp6ap1l,LOC108254970,LOC107680564 coding downstream 1474361 16882002 ~ 16891308 (+)
pde12 pde12 coding downstream 1485590 16893231 ~ 16897114 (+)
LOC113537970 arf4,LOC108254967 coding downstream 1502764 16910405 ~ 16912976 (+)
G308018 NA non-coding upstream 593467 14798973 ~ 14800142 (+)
G307997 NA non-coding upstream 612851 14699997 ~ 14780758 (+)
LOC113537908 NA non-coding upstream 630435 14760831 ~ 14763174 (+)
G307976 NA non-coding upstream 794997 14598393 ~ 14598612 (+)
LOC117599878 NA non-coding upstream 802788 14583567 ~ 14590821 (+)
G308404 NA non-coding downstream 4458 15412099 ~ 15413822 (+)
G308707 NA non-coding downstream 466364 15874005 ~ 15875206 (+)
G308737 LOC105913228,LOC107592839,LOC107701594,LOC108431596,LOC107691887,LOC100331190 non-coding downstream 585754 15993395 ~ 15994043 (+)
G308758 LOC108280992,LOC108431596,LOC107756932,LOC107592839 non-coding downstream 613575 16021216 ~ 16022142 (+)
G308760 NA non-coding downstream 620248 16027889 ~ 16028286 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other upstream 868633 14514592 ~ 14524976 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other upstream 916792 14179783 ~ 14476817 (+)
ippk ippk,LOC107755999,LOC106566243 other upstream 1700697 13674354 ~ 13692912 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 2931073 12457601 ~ 12462536 (+)
G306103 NA other upstream 3877796 11515059 ~ 11515813 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 349249 15756890 ~ 15799890 (+)
amigo3 amigo3 other downstream 1081720 16489361 ~ 16501684 (+)
LOC113537865 LOC108280979 other downstream 1853338 17260979 ~ 17263663 (+)
snrpe snrpe other downstream 3279756 18687397 ~ 18692014 (+)
G310681 LOC108254836 other downstream 3679384 19087025 ~ 19087806 (+)

Expression


Co-expression Network