LOC113538073


Basic Information

Item Value
gene id LOC113538073
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 21006350 ~ 21012460 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403815.2
AAACAAGAGTGAAAAGCTGTCAAGAAAACCTGAAGAAGATAGAGACATCCTCTCTCCTGGGTCCTTCCACATTCCCACATTTGAAAGATCTCACGCTGTAAATCTCACCAGTTACAGTATGTCTGTCCAGCAGCCTGGAATCTTCAGCTCCTTCCTGCACCAACTAGACAGAAACGAATTCAGTTGTCTGGATCTCCTTGTGATTCATTCCTCTTTTACACCACCAACTATCTAATGAAGACACTGGTCCAAACCTTTTGTCCAAACACCCCTAGCTTCAGTACAAAACACGTTTCTTAGATCTTCCAGGTCATTTACAAGGTCTGGAAAGTAGACAGTGATTCATCCTGGTCATGGAcaaggtggatctggagcccatCCCAGGAACAATGGGTGTGAGGAGGGAATACTCTCTAAAGGATATGCCTAaatgggaggttggaggaaaccagagaacttggaggaaacccTCACAGATGCAAGAACAGTAGACACCTGAGCTCAAGATTGAACGGAGAAGCCTGgagccaccatgccacccatcTTTAATTTCAATggaaatttatttgtatagcacttttttcAACATACAATAGATATTcataaagcagcagcaggaATGGCAAGGGAAAAACCCCCTGAGACTACATGAGATCCTTTTCACAGTatgcaggtatacaggtgtgaAAGAGTAAAGACAACAGTGCTGTGTTTGTTTACAGGGTGTTTAGTATGCGCAGGACGGTCTTCATGACTGCAGCAGTAGCTTTTAGCTACAAATCTTTAAATTCTTCATTCTACCAACAGAGTGAAGTCTTCCTATGTAAcctttcttttacttttctttcatttttcttttacgtTCACTCACTGACTTTTTGTTCATGGATACACTCATGGATATCTTACAGGTCTACATCAGCAGATGATGGGTATGAAGGATAGGGCTTAGCATTGCAAAGTTGAACTTGTAACTTGATcatgataatttttttcttttatcaagGATTGGATCCAGACAAGAATTCAAAAATGGGCCTTTCTTTAGCAGTCTGGAGAATTTTTGGAAGTTGGTTGGATCGAGTAATGACCACAGGATAATTCTCTTTCCTAGGAGAagattattcaaattattcttAATAATATGTTCTTGGAATTTTGTTTCCAATGTATTTGCACACTTTCTCCCCTCAACCGCTGCAACAGAATGACATTCTTTCATATTTCCTAAATATGAAATGATGTTCTTTCCTCAAAATGTGCCTGAGGAGACTTTAAAGTGTTCTGTGGGTTGGTAAGGGCTCCTAAAGGGGTTCTTAGTGTAAGCTGCTCTGATAGGAAATCACTCTGTGGGCTTTTATGTAGGACTCTCCAAAAGGGTACtccaaaaaaaggcaaaaaattaTTTAGTGTCTTAAGAAAATGTCATATTGTCttagatttaatctttttttctaagGATGTTGAGCTATAAAAGATTGATAGCCCAGCAAGATCCCTGTTTTAGGTCAAACAGAACTTGTCATGAAACAATGTTCTCCAAAGCTTTTTGTGCAACATACAATACGATTTGATGCAATAAAATTCAGCCTATTATTACCAAGATGTGGCtacatcatcatcctcattatTACCTCGATCTGCCCAAGTAAAGCTGTCATATTTTCTAAAGAAATAAGCTCAGCCTTTCTCcactgtctgattttttttttttttagtttttttcccctttggcCTGCTTTACCAGGACCAGTGGGTTCCATGTTACTCCGATCCTGCCAAAACCACAAGAGAAAATGAATGCCAGATGTGATCGTCACCCAGACGTGATTGGTGTATTCCAACTTTATGAACACCCACCCAACACTTTACGAACACTCTGGCCAACTAAACAGATTCCCAGATTCCCAAAGGATCTTGGATAATGGGGGTGAAAGTCAAAATACGGGTGGTGTCACTTCTTCTACCAGAAGACATTTGTCACAGGGTTGTGGTGAAGTCAATGCAGGAATCGTGACTCAGTCGTAGTGTTCAGTGGGAGATTGTGGACGTCTCGTCCTCTGACTCTGGGACCATGTGGTGGCCATGCACAAAGATCAATCGGGTTTGTGTTGGTCGGCTGTAAAGTTCAGCTACATTCAAAGCAGATATAAACTCTTGTGCTTGATTTAACAATGTTCAGTTCTGCCTCTAAACAATGAATCAATCTCAGGAACACAGTTTCTGAACATAAGAATTGTGAACAATGTAAGTAGAGTCAAGAACAAGGCtcactgttatatatttaaaaagaaatatggaATTCAGATCATTGTAATTGTCATT
>XR_003403816.2
TACCATAATTCTTACACTTCTGGCCTGGACCAAGAGTATGAGCAAAACTTTCCATCTAAACAGATGCTAAGGACAGAGACATCCAGAGTTCAAAGAAGAAGATAGAGACATCCTCTCTCCTGGGTCCTTCCACATTCCCACATTTGAAAGATCTCACGCTGTAAATCTCACCAGTTACAGTATGTCTGTCCAGCAGCCTGGAATCTTCAGCTCCTTCCTGCACCAACTAGACAGAAACGAATTCAGTTGTCTGGATCTCCTTGTGATTCATTCCTCTTTTACACCACCAACTATCTAATGAAGACACTGGTCCAAACCTTTTGTCCAAACACCCCTAGCTTCAGTACAAAACACGTTTCTTAGATCTTCCAGGTCATTTACAAGGTCTGGAAAGTAGACAGTGATTCATCCTGGTCATGGAcaaggtggatctggagcccatCCCAGGAACAATGGGTGTGAGGAGGGAATACTCTCTAAAGGATATGCCTAaatgggaggttggaggaaaccagagaacttggaggaaacccTCACAGATGCAAGAACAGTAGACACCTGAGCTCAAGATTGAACGGAGAAGCCTGgagccaccatgccacccatcTTTAATTTCAATggaaatttatttgtatagcacttttttcAACATACAATAGATATTcataaagcagcagcaggaATGGCAAGGGAAAAACCCCCTGAGACTACATGAGATCCTTTTCACAGTatgcaggtatacaggtgtgaAAGAGTAAAGACAACAGTGCTGTGTTTGTTTACAGGGTGTTTAGTATGCGCAGGACGGTCTTCATGACTGCAGCAGTAGCTTTTAGCTACAAATCTTTAAATTCTTCATTCTACCAACAGAGTGAAGTCTTCCTATGTAAcctttcttttacttttctttcatttttcttttacgtTCACTCACTGACTTTTTGTTCATGGATACACTCATGGATATCTTACAGGTCTACATCAGCAGATGATGGGTATGAAGGATAGGGCTTAGCATTGCAAAGTTGAACTTGTAACTTGATcatgataatttttttcttttatcaagGATTGGATCCAGACAAGAATTCAAAAATGGGCCTTTCTTTAGCAGTCTGGAGAATTTTTGGAAGTTGGTTGGATCGAGTAATGACCACAGGATAATTCTCTTTCCTAGGAGAagattattcaaattattcttAATAATATGTTCTTGGAATTTTGTTTCCAATGTATTTGCACACTTTCTCCCCTCAACCGCTGCAACAGAATGACATTCTTTCATATTTCCTAAATATGAAATGATGTTCTTTCCTCAAAATGTGCCTGAGGAGACTTTAAAGTGTTCTGTGGGTTGGTAAGGGCTCCTAAAGGGGTTCTTAGTGTAAGCTGCTCTGATAGGAAATCACTCTGTGGGCTTTTATGTAGGACTCTCCAAAAGGGTACtccaaaaaaaggcaaaaaattaTTTAGTGTCTTAAGAAAATGTCATATTGTCttagatttaatctttttttctaagGATGTTGAGCTATAAAAGATTGATAGCCCAGCAAGATCCCTGTTTTAGGTCAAACAGAACTTGTCATGAAACAATGTTCTCCAAAGCTTTTTGTGCAACATACAATACGATTTGATGCAATAAAATTCAGCCTATTATTACCAAGATGTGGCtacatcatcatcctcattatTACCTCGATCTGCCCAAGTAAAGCTGTCATATTTTCTAAAGAAATAAGCTCAGCCTTTCTCcactgtctgattttttttttttttagtttttttcccctttggcCTGCTTTACCAGGACCAGTGGGTTCCATGTTACTCCGATCCTGCCAAAACCACAAGAGAAAATGAATGCCAGATGTGATCGTCACCCAGACGTGATTGGTGTATTCCAACTTTATGAACACCCACCCAACACTTTACGAACACTCTGGCCAACTAAACAGATTCCCAGATTCCCAAAGGATCTTGGATAATGGGGGTGAAAGTCAAAATACGGGTGGTGTCACTTCTTCTACCAGAAGACATTTGTCACAGGGTTGTGGTGAAGTCAATGCAGGAATCGTGACTCAGTCGTAGTGTTCAGTGGGAGATTGTGGACGTCTCGTCCTCTGACTCTGGGACCATGTGGTGGCCATGCACAAAGATCAATCGGGTTTGTGTTGGTCGGCTGTAAAGTTCAGCTACATTCAAAGCAGATATAAACTCTTGTGCTTGATTTAACAATGTTCAGTTCTGCCTCTAAACAATGAATCAATCTCAGGAACACAGTTTCTGAACATAAGAATTGTGAACAATGTAAGTAGAGTCAAGAACAAGGCtcactgttatatatttaaaaagaaatatggaATTCAGATCATTGTAATTGTCATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403815.2 False 2325 lncRNA 0.40 3 21006350 21012460
XR_003403816.2 True 2388 lncRNA 0.40 3 21009768 21012460

Neighbor

gene id symbol gene type direction distance location
smug1 smug1 coding upstream 104939 20896980 ~ 20901411 (+)
slc2a10 slc2a10 coding upstream 344661 20654185 ~ 20661689 (+)
si:ch73-267c23.10 LOC108255296 coding upstream 356177 20633750 ~ 20650173 (+)
LOC113537838 NA coding upstream 385111 20618291 ~ 20621239 (+)
LOC113538122 LOC108255274 coding upstream 403286 20596752 ~ 20603064 (+)
calcoco1b LOC108255279 coding downstream 20663 21033123 ~ 21046577 (+)
LOC113537842 LOC108255161 coding downstream 100974 21113434 ~ 21135134 (+)
faim2b LOC108255062 coding downstream 125349 21137809 ~ 21149284 (+)
lrp1aa LOC108281054,LOC108424569 coding downstream 198792 21211252 ~ 21371670 (+)
alas1 alas1 coding downstream 398316 21410776 ~ 21435824 (+)
G311482 hoxc12,hoxc12aa,hoxc12ba,LOC107578812,LOC108433365,LOC105912699,LOC105013633 non-coding upstream 22839 20927003 ~ 20983511 (+)
G311599 hoxc11,LOC106565461,LOC108276183 non-coding upstream 37485 20967715 ~ 20968865 (+)
G311591 hoxd9,LOC108281018,LOC106512889,LOC103134318 non-coding upstream 54812 20948321 ~ 20951538 (+)
G311483 hoxc6ba,hoxc6,LOC108255268,LOC105016985 non-coding upstream 62721 20932678 ~ 20943629 (+)
G311488 NA non-coding upstream 68469 20903312 ~ 20937881 (+)
G311649 NA non-coding downstream 138338 21150798 ~ 21155101 (+)
G311652 NA non-coding downstream 146997 21159457 ~ 21164926 (+)
G311653 NA non-coding downstream 149458 21161918 ~ 21164080 (+)
LOC117599907 NA non-coding downstream 154520 21166980 ~ 21185039 (+)
G311665 NA non-coding downstream 178708 21191168 ~ 21191629 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other upstream 123985 20870652 ~ 20882365 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other upstream 145623 20807858 ~ 20860727 (+)
errfi1a errfi1 other upstream 829078 20119383 ~ 20177272 (+)
si:dkey-264d12.5 LOC108254816 other upstream 1137869 19848467 ~ 19868481 (+)
vamp3 vamp3 other upstream 1222425 19768983 ~ 19783925 (+)

Expression


Co-expression Network