LOC113539633


Basic Information

Item Value
gene id LOC113539633
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 9004691 ~ 9016994 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403942.2
CTGGTCCTCTTGTTCTGTCAACAAAATGTCATCCAGATACACAGCTACCTTTGGAGCGCCTCGCAAAATGCCTTCCATTGTCCTCTGGAAGATTGTCGGATTGGAGCTGACCCCAAAAGACCTAGAATTGGGGAAGGAGCACATCAGTGATGACAGCTAGAGCCACAGGATGACAGAACATGTAATTTACACAAACATGCAGGTGGTGGTAGGAGATACACAAGCAATAAGAGAGAAGACATGTCATTGTCCCAATCTAAGGTCAACAAAAGGAGCAAAGACAAACAttAGGCTAATTTGGTGATACGCTGAATCAGGATGGcagccaaaaaaacaaaggtGGACTTTAGGAGCTACTTTACAACAAGTTAAAGTGTGACAGAAGCACAGAAGCAGTCCTGCCAGGTAGTAGCTCAGACAGAGCAGGAAGAGAGGCAGGGTCACAAGTGAGGTGAGGCCTAGGCTTGTAACAATGtgattataaatgtaaatgtagatatttgttttgtattacaATGAGGTTGCACTGGTATACTAAGATGTCTA
>XR_004580248.1
agAACGGGTTGTTGTTTAGttgttgatttggtgaagtttttcGTTAGGAgacattatttaacaattatggaaggagcctcGGTTGTACGTTCTCTCAGTCTCGGACCTAGAATTGGGGAAGGAGCACATCAGTGATGACAGCTAGAGCCACAGGATGACAGAACATGTAATTTACACAAACATGCAGGTGGTGGTAGGAGATACACAAGCAATAAGAGAGAAGACATGTCATTGTCCCAATCTAAGGTCAACAAAAGGAGCAAAGACAAACAttAGGCTAATTTGGTGATACGCTGAATCAGGATGGcagccaaaaaaacaaaggtGGACTTTAGGAGCTACTTTACAACAAGTTAAAGTGTGACAGAAGCACAGAAGCAGTCCTGCCAGGTAGTAGCTCAGACAGAGCAGGAAGAGAGGCAGGGTCACAAGTGAGGTGAGGCCTAGGCTTGTAACAATGtgattataaatgtaaatgtagatatttgttttgtattacaATGAGGTTGCACTGGTATACTAAGATGTCTA

Function

GO:

id name namespace
GO:0038023 signaling receptor activity molecular_function
GO:0060089 molecular transducer activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004952 dopamine neurotransmitter receptor activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko05034 Alcoholism

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403942.2 True 546 lncRNA 0.43 5 9004691 9016994
XR_004580248.1 False 531 lncRNA 0.42 5 9005903 9016994

Neighbor

gene id symbol gene type direction distance location
nfs1 nfs1,LOC107601922,LOC107559867 coding upstream 78478 8918438 ~ 8926213 (+)
rbm39a rbm39,LOC107727188,LOC107685714,LOC107602070 coding upstream 96160 8901673 ~ 8908531 (+)
rem1 rem1,LOC108255017,LOC108411381,LOC107727768,LOC107655086,LOC105017066,LOC107727184,LOC107554936,LOC107685743 coding upstream 125015 8869019 ~ 8879676 (+)
pnp4a pnp4a,LOC108254835,LOC103041505,LOC108411380,LOC107655042,LOC107727769,LOC107727193,LOC107685744,LOC107559547 coding upstream 184847 8813581 ~ 8819844 (+)
maf1a LOC108254834,LOC108425756,LOC106565397 coding upstream 304047 8693677 ~ 8700644 (+)
syt6b syt6,LOC107727826,LOC107560238,LOC107655078,LOC107749496 coding downstream 211448 9228442 ~ 9237329 (+)
inavab LOC108254772,LOC108410711 coding downstream 299404 9316398 ~ 9335379 (+)
rnpep NA coding downstream 330094 9347088 ~ 9350893 (+)
LOC113539578 LOC108410710,LOC107727873,LOC107560790,LOC107685706,LOC107655073,LOC107749489 coding downstream 341825 9358819 ~ 9379985 (+)
rabif rabif,LOC107601129 coding downstream 390531 9407525 ~ 9409888 (+)
G304669 NA non-coding upstream 65004 8939059 ~ 8939687 (+)
G304600 NA non-coding upstream 242438 8761931 ~ 8762253 (+)
G304599 sox4,LOC108255020,LOC106925895 non-coding upstream 243048 8756598 ~ 8761643 (+)
G304575 NA non-coding upstream 286228 8718224 ~ 8718463 (+)
G304566 NA non-coding upstream 314982 8689493 ~ 8689709 (+)
LOC113539427 NA non-coding downstream 2606 9019600 ~ 9021252 (+)
G304898 NA non-coding downstream 280375 9297369 ~ 9297578 (+)
LOC113539732 NA non-coding downstream 294726 9311720 ~ 9312791 (+)
G304917 NA non-coding downstream 343336 9360330 ~ 9365833 (+)
G304924 NA non-coding downstream 378581 9395575 ~ 9395926 (+)
nfasca nfasc other upstream 442989 8481095 ~ 8561702 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other upstream 977762 7974591 ~ 8026929 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other upstream 2225333 6663968 ~ 6779358 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other upstream 2502055 6498060 ~ 6502636 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other upstream 2710942 6200446 ~ 6293749 (+)
shisa4 shisa4,LOC108254774,LOC107552307 other downstream 519131 9536125 ~ 9551761 (+)
G305515 NA other downstream 1495677 10512671 ~ 10513270 (+)
LOC113539694 LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other downstream 1747280 10764274 ~ 10773442 (+)
G305727 NA other downstream 2094745 11111739 ~ 11112518 (+)
unm_sa1614 LOC108254916,LOC108424671,LOC107566077,LOC107691346 other downstream 2124242 11141236 ~ 11178473 (+)

Expression


Co-expression Network