LOC113539732


Basic Information

Item Value
gene id LOC113539732
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 9311720 ~ 9312791 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403966.2
CTTGGGGACCACCCACTTCCGGTATCGCTCATGGCTCCCGCTGCGTTGATGgaTTAATGGTGGCTGTGTGGTCTGTCTGCTGTTTTCCCCTCGGATTGGCAATTTAACGTGTTGGAAAATCTTTGGCCTCCAGgtAGAGCTGCCCATATTTGAAGATTGGTTTTCCGGATATTTAATCAGGATTGCAGGGTGGTATCCAGTGGTGCTGCTGTTTTGCTCCGCGCTGGTTTTGCTCCGTTTGCTTCCGGTGTGACGCGAACTGTGCTACCTCATGGGGCTTCTTGTGCGACGTGGGTTGTGtcgtgccgtgtgtgtgtgacattgtaCCGCATCGTTTCGCATGGAATTGGTAGATTTTGATCTTTTGTGACTTTATGTCCAGGCTTGTAAACCCGTCTTCCAATATTTTGAGTCCCATAAGGAGGGTTTTTGTGAAAGTTGGGTCACCTGGGTATTTTTATTGAAACTGTattgttttcttccttttttgtggGGTTAACGATTGTTTCATTGATTCTGTcttgtttctgaatgttttgATGGTATTTTTGGTGTATGATAAATTTTCTCTTTGTcctgtgttttaggagtcaaGCCCCCAGGGCAGGCTATAGGCTGTCCCTCCtgcatggtggtggtgtttcCGTCACAGCGTGCTGTGTGGTTGTGCGTGATTTCACCGGTGTGCTGTGTGAGTGGGCCGTGTGTCTTGGTGGAGGTACCGATTCTTATATAAAGTCAAGGAGCTGAAGTTGGTTTATCTGCCCTGGGTTGACTTTGACCCCTTGTCTagtgtggtttgtgtgtttaattgtgAATGTGGGACCATGATATTGGGGGATAGTTCCCTCTATTTTAACGGagttgtgtgatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403966.2 True 874 lncRNA 0.47 3 9311720 9312791

Neighbor

gene id symbol gene type direction distance location
syt6b syt6,LOC107727826,LOC107560238,LOC107655078,LOC107749496 coding upstream 74391 9228442 ~ 9237329 (+)
nfs1 nfs1,LOC107601922,LOC107559867 coding upstream 385507 8918438 ~ 8926213 (+)
rbm39a rbm39,LOC107727188,LOC107685714,LOC107602070 coding upstream 403189 8901673 ~ 8908531 (+)
rem1 rem1,LOC108255017,LOC108411381,LOC107727768,LOC107655086,LOC105017066,LOC107727184,LOC107554936,LOC107685743 coding upstream 432044 8869019 ~ 8879676 (+)
pnp4a pnp4a,LOC108254835,LOC103041505,LOC108411380,LOC107655042,LOC107727769,LOC107727193,LOC107685744,LOC107559547 coding upstream 491876 8813581 ~ 8819844 (+)
inavab LOC108254772,LOC108410711 coding downstream 3607 9316398 ~ 9335379 (+)
rnpep NA coding downstream 34297 9347088 ~ 9350893 (+)
LOC113539578 LOC108410710,LOC107727873,LOC107560790,LOC107685706,LOC107655073,LOC107749489 coding downstream 46028 9358819 ~ 9379985 (+)
rabif rabif,LOC107601129 coding downstream 94734 9407525 ~ 9409888 (+)
kdm5ba kdm5b,LOC108254769,LOC107600688,LOC107749493 coding downstream 97461 9410252 ~ 9435881 (+)
G304898 NA non-coding upstream 14142 9297369 ~ 9297578 (+)
LOC113539427 NA non-coding upstream 290468 9019600 ~ 9021252 (+)
LOC113539633 NA non-coding upstream 294726 9004691 ~ 9016994 (+)
G304669 NA non-coding upstream 372033 8939059 ~ 8939687 (+)
G304600 NA non-coding upstream 549467 8761931 ~ 8762253 (+)
G304917 NA non-coding downstream 47539 9360330 ~ 9365833 (+)
G304924 NA non-coding downstream 82784 9395575 ~ 9395926 (+)
G304926 NA non-coding downstream 91260 9404051 ~ 9404267 (+)
G304927 NA non-coding downstream 113252 9426043 ~ 9427519 (+)
G304947 NA non-coding downstream 248594 9561385 ~ 9561606 (+)
nfasca nfasc other upstream 750018 8481095 ~ 8561702 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other upstream 1284791 7974591 ~ 8026929 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other upstream 2532362 6663968 ~ 6779358 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other upstream 2809084 6498060 ~ 6502636 (+)
LOC113539422 rusd4,LOC108255275,LOC106582904,LOC106565791,LOC108435115 other upstream 3017971 6200446 ~ 6293749 (+)
shisa4 shisa4,LOC108254774,LOC107552307 other downstream 223334 9536125 ~ 9551761 (+)
G305515 NA other downstream 1199880 10512671 ~ 10513270 (+)
LOC113539694 LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other downstream 1451483 10764274 ~ 10773442 (+)
G305727 NA other downstream 1798948 11111739 ~ 11112518 (+)
unm_sa1614 LOC108254916,LOC108424671,LOC107566077,LOC107691346 other downstream 1828445 11141236 ~ 11178473 (+)

Expression


Co-expression Network