LOC113539753


Basic Information

Item Value
gene id LOC113539753
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 2007610 ~ 2021578 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403969.2
gtgagtgtgtatgagtgtgtgtgagtgtgcacacAGCACAGACTTTCTGAGTGGGACCTTTATACACTGACCTCCATGGACACGTATTCAGTCCATTTACAACGCAACTAAATGTGCTGTAGAGTCAGAAAAAAGGGAGTAAAAGGGTGTTTGACGTAGGTGGATTTCAGAAGAATCTTATCTTCATTAGAAACAGACCAGGTGTCTCTCACGCTTCCTCAACTGGCGCAAAGAGGGAATGAACGTCTGCCTCCAAGATCTGCCTCCGTCAGTGGAAAAGGAGAGGACGATTCCCACTCAGAGACATGCAATACATGACGTGAAGCTGCTCTGGGCTCGCAGTGCTTTATTTAGCGTGTTTacgtgtgtgtacacgtgtggATGCTCACAGTGCCACAGCTTGGATCCTGAAATACTCAACTCACTTTCAGTGACTAAAAtaagtgagagaggaagaaaaaatagATCTAATCCCCAAACACGCCGGCGCTTGACTCGGCACAGGTGTCGTCTTGTTCCTGTAAAGAAAACTGTTCCTCGGGCTGATTGACGctgtttttgttaggagacatgaCCCAGTTGCTTGACGCAGCGCTACAGGGCTCAGTGACTCGTGTGAATCTGCTGCAGCAGACGAACTGGTAAAACTCGACCCACACACAGAATAATAACCAGCGGCTGTCGCTTCCCACGTTCTCCAGGCCTTTTGGGGAAAGCTTCTGTCTCAGTTTCCTCTCAGTAAATGGATTTATCAGAAAAAATACCACACACCTCCCTGTTAGCTTTCAGTATATCATGTGATTTAGCGTTAAACAGAAAGAGTGTAATGAATCGTTGATGTGTAGCTGGAGGGAGatcagctaacacacacacacacacgtttgtgtTACTATGTGAGGAGCTTCCACTGATGTAAtaattaatgcagctaattaagcTTAAACTCAGTGACTAAAAGTCAATGTTTTGGcccttttaatttttaatagaaaagctgcagtttttgtacaaaatagttttccttgtggggaccaaCAAAATGTCATGCTCCTGTCCTTGTGGGGAACACatgcgtatatatatatatatatacatacacacacacacacacacactcgctctctcactcactaCCATCTTTAGTAACCCTGTATCACCACAACccacaaagacacaaacacacacacacatatacactgtatgtgCAGCGGATTCTTTGTAATGCAGTACCACAGCAGTGTTTACAGTTATTTATGATCTTATTCTAACACTTAGACACAGAGATCTGCAGTGTGACACTGATACAGCTGaggtgttcacacacacacacacacacacacacacacacacacacaacacacattcatGATGTGTGCTAAGCAGTGGTGAATAAATGCTCTCATGTGGCTGTTTTGGAAATGATCTGATGGTGCGGTGATAAAGAATTCACTCTGGAGAGTCTTGAGGTTTTCTGACGTGGCTTTTCTCGTCTGTGagactttcttttttaaatatcattactGATCTTTCAACTAAATCAAACTCATCTCTTTTTTATCATCATAGGATTATTTGTAGCCTGTATGTTTAAATTTGCTGACACTTTCAGACTCTCTAATCTACCTGAAGTGCGTGTTATAGGTGTGTGTTATAGGTGTGTGTTAAAGGTGTGTGTTAAAGGTGTCGATTGTTGGATTGCATTAGCCCTGGTACCTGATAATACACTCCGGTCCCTCGGGACTTCTCTAAACATGTCAGGACACTTCTGTACACCACTcgtggtcacacacacaacatgataACATGATTTGGAgtattcctttttctttttaaatcacatACATTCTTATATGAAATACATACaatcttaggaaaaaaaaaaaaaagcaaaaaaaaaatcttaccaagtgaagatcatctaatatttctcattatgaaattattacataacaaatataagaGCATTAAACCTGTTTCTAGGCAGATTTACTaaattcaagcttgaaattgtcccTTCTTCTATTGACAGACAAGTTTGCTTCTGTCTAGAAATATACACCTGAAATTAGCTAAATTTTCTGCCAACAAGGCTGGAAGACAATTTCAACCTTATACTGAGTTCAAATATCTAGAAACAGGTTAAATAATCTTGCATTTGTTTAAGAACGATCTAATAAAGAGGAATATTAGTTTACATTACATATACGtaagataatttaaaaaaatattcagatattttaagatatcttttttttgtaaagattgggccacgcctccttaattGTTTATGATGCGCACCAAAGCAAAATCCTAAGCAGATGTAGCATCGGAGTCAGAGAAAGGGATCGATGCAGAATGGGACAGTGTCGTCTTTGTCTTCGTCCCTCTCCCTTACACTCCCTCCATCGGGCTTTTGTGGTCGTACGAAAACCTAACCGTCTCCTGGAGCTTCTCCATTTCCTGCCGCACGCTCTGTAAAACAGCTGGACGTTTTTCTGGTCCTCATTAAAGACAGATGAGAGAGACAGTTTGAAAACCTCTttcatgtgacacacacacacacacacacacgtacacacacattgCCTCATTATATGCAAAAGtgttataatgattttttttaaattccacctATAGCTATAAACTATTGTTTGAGTTGTTCCTGATGTTCAGCATCTCACTTCGGACGCCTCTGGTCTTTAGAAGGACGCTGTCTCCTCTCAGCGGACGAGCTCATAACTTTGGCGACTCTTCTGATGTGTCCCCAATCATAAATCAGCCTTTAAATTAGACGAGGCTTCAGACTTTAGGATTAAGCTAACGCTCCAGATGAAAAAGACGTGTTGTTAGTGGAGACAGGAAGCGGCGCTCTCATTTGACCTCCGACCTCACGGACGTGACCCAGGACTCCGGTCTCAGTCGTTGGCATGTTGCGGGTCAGTGAGGACTCACTGCATGTACACatgcctgcgtgtgtgtgtgtgtgtgtgttgcagtaaaAGGGAACAGTGTGTGCCTATCTGTGTATCTGGATAGCCTTTGTGAAGAAGTTTTCCATCCGATTTGCTTTGAAACAAATCCGCAGCATTACAGTAGGTTAATCTCAGCGGTTGTCCGGTTCCTGCTGTCTGTAATTGATTTAAAGAGCAGGTTGTGTTTTCTGACGTTTCCCTCAGGTGCTCGGCGGCTCCGTACAAGCCCACAGCTTGTTAGCACCTGACACAGAGTCGGACAGAGGTTTAATCTTCAGTCTCACCTGGGAAACACATTTTAGTGTGCTTTCACATACGCCATGTTTAGTGCGTTTGAATaaaaccctggtgtgttctcctccTTGGGGTGGTTCTttaggtgagaacacagcaatcacactcggG
>XR_004580183.1
gtgagtgtgtatgagtgtgtgtgagtgtgcacacAGCACAGACTTTCTGAGTGGGACCTTTATACACTGACCTCCATGGACACGTATTCAGTCCATTTACAACGCAACTAAATGTGCTGTAGAGTCAGAAAAAAGGGAGTAAAAGGGTGTTTGACGTAGGTGGATTTCAGAAGAATCTTATCTTCATTAGAAACAGACCAGGTGTCTCTCACGCTTCCTCAACTGGCGCAAAGAGGGAATGAACGTCTGCCTCCAAGATCTGCCTCCGTCAGTGGAAAAGGAGAGGACGATTCCCACTCAGAGACATGCAATACATGACGTGAAGCTGCTCTGGGCTCGCAGTGCTTTATTTAGCGTGTTTacgtgtgtgtacacgtgtggATGCTCACAGTGCCACAGCTTGGATCCTGAAATACTCAACTCACTTTCAGTGACTAAAAtaagtgagagaggaagaaaaaatagATCTAATCCCCAAACACGCCGGCGCTTGACTCGGCACAGGTGTCGTCTTGTTCCTGTAAAGAAAACTGTTCCTCGGGCTGATTGACGctgtttttgttaggagacatgaCCCAGTTGCTGACCAGCAGAGTATAAGATGTTTATCAGCAGCCAGTCCTGACACATCCCTCATTTTGGGCCGTAgggaaattttttttcagattattgAAAAGACCTTCATGTATTTCATGCCTCTGAGATTGTGAGGTTTTTCAGAACCATCTACACTGCAAGTTctcaaaattttattattattattattttttata

Function

GO:

id name namespace
GO:0048738 cardiac muscle tissue development biological_process
GO:0007507 heart development biological_process
GO:0008015 blood circulation biological_process
GO:0003008 system process biological_process
GO:0003013 circulatory system process biological_process
GO:0003015 heart process biological_process
GO:0060537 muscle tissue development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0060047 heart contraction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403969.2 True 3377 lncRNA 0.42 3 2007610 2021578
XR_004580183.1 False 773 lncRNA 0.44 3 2007610 2009813

Neighbor

gene id symbol gene type direction distance location
inka1a LOC108280975 coding upstream 9175 1994213 ~ 1998435 (+)
gnai2a gnai2,LOC103358732,LOC104930488,LOC101487808 coding upstream 30478 1926177 ~ 1977132 (+)
slc38a3a slc38a3,LOC107715801,LOC107685967,LOC107718202,LOC106950485 coding upstream 87156 1878603 ~ 1920454 (+)
cacna2d3 cacna2d3,LOC108254724,LOC107751209,LOC107743247,LOC107582378 coding upstream 194674 1760864 ~ 1812936 (+)
cacna1da cacna1da,LOC108281043 coding upstream 255316 1660208 ~ 1752294 (+)
mst1rb mst1r,mst1rb,LOC107677494,LOC107686010 coding downstream 41266 2062844 ~ 2088852 (+)
LOC113539428 LOC108255194 coding downstream 505141 2526719 ~ 2568406 (+)
grm2b LOC108281021,LOC108435310,LOC107575639,LOC107659540,LOC107715788 coding downstream 556796 2578374 ~ 2607935 (+)
si:ch211-213o11.11 LOC108281028 coding downstream 599934 2621512 ~ 2629721 (+)
zgc:172270 LOC108281023 coding downstream 613736 2635314 ~ 2641323 (+)
G300487 NA non-coding upstream 63412 1943426 ~ 1944198 (+)
G300479 NA non-coding upstream 83143 1920527 ~ 1924467 (+)
G300467 NA non-coding upstream 150209 1854701 ~ 1857401 (+)
G300447 NA non-coding upstream 185271 1820621 ~ 1822339 (+)
G299916 NA non-coding upstream 367182 1626093 ~ 1640428 (+)
G300649 NA non-coding downstream 172710 2194288 ~ 2195719 (+)
LOC117599869 NA non-coding downstream 298469 2320047 ~ 2325625 (+)
G300688 NA non-coding downstream 332266 2353844 ~ 2354096 (+)
G300689 NA non-coding downstream 333455 2355033 ~ 2355245 (+)
LOC113539650 NA non-coding downstream 354394 2375972 ~ 2387101 (+)
LOC117599925 NA other upstream 508438 1496860 ~ 1499172 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other upstream 512965 1448442 ~ 1494645 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other upstream 1134854 863258 ~ 872756 (+)
LOC113539702 LOC108281106 other upstream 1162740 842853 ~ 844870 (+)
mfap2 mfap2 other upstream 1202512 758509 ~ 805098 (+)
mon1a mon1a other downstream 31505 2053083 ~ 2060641 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other downstream 119944 2141522 ~ 2188917 (+)
LOC113539549 LOC108254930 other downstream 694084 2715662 ~ 2723581 (+)
LOC113539463 adamts9 other downstream 1828983 3850561 ~ 3913086 (+)
cadpsa cadps other downstream 2136654 4158232 ~ 4278673 (+)

Expression


Co-expression Network