LOC117599869


Basic Information

Item Value
gene id LOC117599869
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 2320047 ~ 2325625 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580170.1
ATCTGGAGCAAAAACCTGTGAGTCAATTTCCACATACTGACTAACGCAAGTAGGAAAGACAGATCAAATATCCAGAAGTGTTCCTGATCCTGATCCGACCCTCAGGGATGCATCAGACGACAAGCTCAAGGACACTGTGCTAGCGATAACTTTCTCTGgagAGCCTTCTCACTGGCCAGAGATTTAGGAGGGACATTAAATCATGGTGTAACTCAGAAAGTGCTCTTACACAATCACCAAGAAGTATGAGGTGTTTCAGCTGTAGGGTGCATTAGATAGAGGGAAAAGTGACAAagggaaggagagaaagagagatacaagccatTTGCACAAACAGCAGTGATATTTGTTTAACCCAGCCTCAGCATGAGGTAAGCTGCTATAAGCGAGAGAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580170.1 True 396 lncRNA 0.45 3 2320047 2325625

Neighbor

gene id symbol gene type direction distance location
mst1rb mst1r,mst1rb,LOC107677494,LOC107686010 coding upstream 231195 2062844 ~ 2088852 (+)
inka1a LOC108280975 coding upstream 321612 1994213 ~ 1998435 (+)
gnai2a gnai2,LOC103358732,LOC104930488,LOC101487808 coding upstream 342915 1926177 ~ 1977132 (+)
slc38a3a slc38a3,LOC107715801,LOC107685967,LOC107718202,LOC106950485 coding upstream 399593 1878603 ~ 1920454 (+)
cacna2d3 cacna2d3,LOC108254724,LOC107751209,LOC107743247,LOC107582378 coding upstream 507111 1760864 ~ 1812936 (+)
LOC113539428 LOC108255194 coding downstream 201094 2526719 ~ 2568406 (+)
grm2b LOC108281021,LOC108435310,LOC107575639,LOC107659540,LOC107715788 coding downstream 252749 2578374 ~ 2607935 (+)
si:ch211-213o11.11 LOC108281028 coding downstream 295887 2621512 ~ 2629721 (+)
zgc:172270 LOC108281023 coding downstream 309689 2635314 ~ 2641323 (+)
sypl2a sypl2 coding downstream 358424 2684049 ~ 2696967 (+)
G300649 NA non-coding upstream 124328 2194288 ~ 2195719 (+)
LOC113539753 NA non-coding upstream 298469 2007610 ~ 2021578 (+)
G300487 NA non-coding upstream 375849 1943426 ~ 1944198 (+)
G300479 NA non-coding upstream 395580 1920527 ~ 1924467 (+)
G300467 NA non-coding upstream 462646 1854701 ~ 1857401 (+)
G300688 NA non-coding downstream 28219 2353844 ~ 2354096 (+)
G300689 NA non-coding downstream 29408 2355033 ~ 2355245 (+)
LOC113539650 NA non-coding downstream 50347 2375972 ~ 2387101 (+)
G300700 NA non-coding downstream 60358 2385983 ~ 2386221 (+)
G300723 NA non-coding downstream 110741 2436366 ~ 2518205 (+)
camkvb camkv,LOC108414427,LOC107718199,LOC107685970,LOC107715795,LOC107659532,LOC107576418 other upstream 131130 2141522 ~ 2188917 (+)
mon1a mon1a other upstream 259406 2053083 ~ 2060641 (+)
LOC117599925 NA other upstream 820875 1496860 ~ 1499172 (+)
erc2 erc2,LOC107582387,LOC108414413,LOC107694874,LOC107699320 other upstream 825402 1448442 ~ 1494645 (+)
fbxo42 fbxo42,LOC107719051,LOC107656898 other upstream 1447291 863258 ~ 872756 (+)
LOC113539549 LOC108254930 other downstream 390037 2715662 ~ 2723581 (+)
LOC113539463 adamts9 other downstream 1524936 3850561 ~ 3913086 (+)
cadpsa cadps other downstream 1832607 4158232 ~ 4278673 (+)
LOC113539599 tmem110,mustn1,LOC108435844,LOC107746891,LOC107656046,LOC107755187,LOC103359875,LOC107091502 other downstream 2125415 4451040 ~ 4469196 (+)
ptprga ptprg,LOC107752167,LOC106583020 other downstream 2885019 5210644 ~ 5471561 (+)

Expression


Co-expression Network