LOC117599874


Basic Information

Item Value
gene id LOC117599874
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 19839421 ~ 19848284 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580176.1
AGAACAGGGCAGTCAAGGTAGCAGCGTATGTTCCGTTCTCACATGGCTCGCACAGCGCCTTCGTGTTTGAACCACACTGAGACACCAGACGGTTTCCTGCAGAAGAAAAACTTCATCATATACTACTGAgCAAACTTGGCTGGAGGACGAGGGGTCAAGTGTCCAGTCATCACATCCCGGTTCCACCTTGTATcccagagacagagacagcggCAATAACAGAGTCAGAACGAGCCACATCACTCGGggcACGCATTAGGGCACCTCAGCTGCAGATGTAGGTGGCACAGTCACACCCTGGCACTTCCGAGACTACACCAGCGTGCacagaacccttaaggaacctttttggatgtttgtttatttcacaaACCTCTGATGTTGCAGCTCTTGTTACTTCCATTGAATAGAGACATTAACATTATAAGCattgttaaatatgtttaacagaaacagagTCTCAATCTGCAGTTCCTTGAAGCATAATTTTTTTCAGCTAAGCTCTAATTCTGCCTTTATGAATGCAGTGTAACCTGTTACTCATGGCTTTGTATGAAGTCACTGACATTCTTTTCTTTGACACTGGTCAAAAAGAATGTTGTATGGGTTACTACAACAGAGCTGCAAGGAGTGCcgagctgtttatttattacaaacagGGTTTAAATTTGGAAATGGCCCGTCATGACTAATGAGACGTGTTGAAAAACCAAAGTGATTGTTGCTGATGTTCAGATTTTTTGACTAACCGGGTGCTTGAGCTGGTTTGGCGTTAGGTTAACTTGTGCAGGTCTTTGGTTCACGATGATGTAGACAACAACACCTCGTGATGCAGCTGAGTGCAGATCCCTGATCACGGTGCTGTCTGTGACTCTGTCTGCTACGATGGCGATCAGCTGCtcgacaaaaacaaacacaatgaagACATGTAGCATAGAAGGTGCTGGAATGCAAATTATGGTTCCCTCCGGTTCTTAAAGTCAAAACCAGCATGTACTGTGTAACAGTGGAAATAAACCAACAGTGTTGGGTTAATCTATAGTTACAAGCACAATATGTCTAGACTTTATCACTTATTGAGCGATGATTATCCTGTTAACTcctgattcattttttatttttggaaataaaatgtgtaaaatgtatttaaaaaccCAACATCAGTTATTAACACAATAAACCACATTTATGGAAATGCACATATTTAAAGATGACTTTTCTGCTGCTACTGATGGAAAATGCAAATTACAGATGAACACAATGTGACTAATCTCTATGGGATCATCTATGGGAAGATGGTAAACTGTGTGACTAATctctttttataacattttctttttatatttccaaaaatGAGTCAGTTTTCTGTACTAATACTTCAGCTTGTTGCTCTCAGATCAAAATGAACCTCATATCTGTCTTATAAATGGAATTTTTCATTAGAGAAATTGAGCTAAACCTCATAATGTTTCATGTTGGAAAGATATTAGTGTTATAGTTAATAACTAACTGTTGTAGTATAATAGTTTGACTTGAAGATAACATGACCATTAAAGGAATCATAAAACAAA
>XR_004580177.1
AGAACAGGGCAGTCAAGGTAGCAGCGTATGTTCCGTTCTCACATGGCTCGCACAGCGCCTTCGTGTTTGAACCACACTGAGACACCAGACGGTTTCCTGCAGAAGAAAAACTTCATCATATACTACTGAgCAAACTTGGCTGGAGGACGAGGGGTCAAGTGTCCAGTCATCACATCCCGGTTCCACCTTGTATcccagagacagagacagcggCAATAACAGAGTCAGAACGAGCCACATCACTCGGgATTGGAAGTTTGACACATGCTTCCACTTGAAGTCACCTCAGAAGATCTCTCTTACCTGTAGCTGCCCAGAACCACTGTCTCCAGATCCACCAGGACAAAGTTCTCCTTCAGCTCTCCCAC

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580176.1 True 1571 lncRNA 0.39 3 19839421 19848284
XR_004580177.1 False 368 lncRNA 0.51 3 19839421 19845547

Neighbor

gene id symbol gene type direction distance location
si:dkey-264d12.1 LOC108254813 coding upstream 4992 19815906 ~ 19834429 (+)
per3 per3 coding upstream 30100 19787821 ~ 19809321 (+)
LOC113538092 camta1 coding upstream 77169 19535411 ~ 19762252 (+)
cdc42 cdc42,LOC103465423,LOC100691174,LOC101164400,LOC108248645,LOC107083933,LOC103386293,LOC100697482,LOC107395067 coding upstream 475438 19349748 ~ 19363983 (+)
c20h1orf50 c21h1orf50,cunh1orf50,zgc:112255,LOC105895900,LOC107654415,LOC107654365,LOC107565729 coding upstream 496358 19337932 ~ 19343063 (+)
si:ch211-193i15.1 LOC108254870 coding downstream 35542 19883826 ~ 19894420 (+)
mmel1 mmel1,LOC107712974,LOC107654428,LOC107756657,LOC107702001,LOC107592889 coding downstream 156121 20004405 ~ 20022989 (+)
slc45a1 slc45a1,LOC107654425 coding downstream 193055 20041339 ~ 20053146 (+)
pax7a pax7,pax7a,LOC108255053,LOC103136430 coding downstream 331624 20179908 ~ 20237403 (+)
park7 park7,LOC107657982,LOC107701995 coding downstream 430288 20278572 ~ 20288754 (+)
G310880 NA non-coding upstream 2857 19835679 ~ 19836564 (+)
G310882 NA non-coding upstream 27686 19811438 ~ 19811735 (+)
G310870 NA non-coding upstream 122092 19717081 ~ 19717329 (+)
G310828 NA non-coding upstream 278031 19561183 ~ 19561390 (+)
G310686 NA non-coding upstream 717365 19090382 ~ 19122056 (+)
G310905 NA non-coding downstream 51594 19899878 ~ 19905766 (+)
G311204 NA non-coding downstream 112817 19961101 ~ 19961315 (+)
G311207 NA non-coding downstream 114230 19962514 ~ 19963668 (+)
G311225 NA non-coding downstream 147780 19996064 ~ 19996270 (+)
G311220 NA non-coding downstream 179612 20027896 ~ 20028312 (+)
vamp3 vamp3 other upstream 55496 19768983 ~ 19783925 (+)
phf13 phf13 other upstream 322243 19508189 ~ 19517178 (+)
svbp NA other upstream 340750 19494758 ~ 19498671 (+)
G310681 LOC108254836 other upstream 751615 19087025 ~ 19087806 (+)
snrpe snrpe other upstream 1147407 18687397 ~ 18692014 (+)
si:dkey-264d12.5 LOC108254816 other downstream 183 19848467 ~ 19868481 (+)
errfi1a errfi1 other downstream 271099 20119383 ~ 20177272 (+)
znf740a znf740a,LOC108254942,LOC108424621,LOC107754560,LOC107551334 other downstream 959574 20807858 ~ 20860727 (+)
hnrnpa1a LOC108255131,LOC108424623,LOC107707363,LOC107551332,LOC107754559 other downstream 1022368 20870652 ~ 20882365 (+)

Expression


Co-expression Network