LOC117599900


Basic Information

Item Value
gene id LOC117599900
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 13940426 ~ 13960190 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580226.1
acaaaaaaaaaccaaaggaaGTAAAATTAGCATATTAAATGTGATACAGCAACCAGATTTAGTCTGGCTAACAGGAAATGCATTTGACTACAAGGTCAAATTCATGTGGTTGAAATCCTATCAAGAGCTAATCAAGAAACAAGACACCTGAAACAAATGATTGTAATTGGCTTCATTGAATCTTTGATGAACAAGCCTAcatgctttgtgtgttttttatgaaCTGTTACCAATCAGTATAAATCACTCAAACTCAAATCAGAAACTCAGAAGGAAAGTCAATTTACACTAACCTTATGTTCTTGATGAACtcactgcattttaatttttgcagtgtgtatataatgaTGCAAAATAACCATATTATTCTCTGCTGACTGCAACCAAAATGCTGCAAGCATTCGTTaatgaaatatgtgaaattaGCACATCCTAATAAGCACAATGTAATTTGCATAATGTTGATTGAGGTTTATTAGCTTTCATATATTGTTAGCATCCTAAGAGCAATGttccatttatccatttactGATGGACTGTTCTTGATCAAAACATCTGAACAAATGGAACACACCTTTTTTGGATTTAGGTTTAATACGAAGCACATTTGGCAGAAGGAGGGAATAGACTTCTGAGGAAGAGTGCATTCTTGGAAGCCAAAGCTCAAGATCGATTAATGGTGAAGCAGATTACATGCAGGCAGTGTGAGGGAAGGTGGATAGAAAGGGATGCACTCTTTCCTCAAACCATCACTGCATTCGCTTTTATTGTCTTCAAAGTCTGAAGCCCAACTTTCAGCAGGGTTAATTATCTTCCATGTGATTTTACTCATGATTTTGGCATTTTTGCAGTTCCTAGTTAGCATTTCCATAGTATACTCCATAACAGCGTGATGTCCTGCAAATCCCTGTCTTTTACAGACAACCCcagtaaacaaaatgaaatatattattgttatctcataaaacaaaatgttccaTAAATGCTTTTATTCCAAAGCCATCTGTCAATCAGCCATAGTGAGCAAGATCAGTTGTATCAATTGCTTAAGAGACCCTTTCCAAAGTAATCAACTTTTAGGCAGATCTGCAGTCAATAGGAGAGCATGATAACATTAGGTTAGATGCAGACATAGACTACATTGATGCAGACACCCTCAGAATACTAGACAAAGTTAGCTAGCCAATGTTTCTGCATATATGCCTATATTGCATATATTCCAATTCAAATGCTAATTAGAAAATGCTAATGCAAACATGTATTTGCAGGTGCATTTTACTTTTGCCAGCAATTGTACATTGTTGTGCACAGAAAGGGAATTGCAATTGAATTTGATTGATTACATGATTGATTAATTTTGGACCATCAGAGAGCTGATGAGACTGACCACAGGTGAATTATCTTGATTTTACTCTTCCAGTAATGACAGTAATGACAGATGACCTGACCATGAAATAAACCAGCAAAGAAAAATCAGAGAAAACacggcaggggtgaaggtatcacaagccaccgttcaaagaagacttcaagagcagaaatacagaGGCTGTACCACAAGATGCCAACCACCCAACagcagattggaattcacataCAGAGATCGGGGTtgctgtggatccagagcctatcctgagaACACAGGATGCAAGTCCGAAGAAAATTAAAGCTACCTTAGATGGCTTTCTACAAAAGAAGCAAACCCGTACACCGCAGCAAACGACTGCCCTCATGGTGTATATTCTAAACATGCTCACCGACATGAGACCACTCTCCATGGTTGATGGTGAAGGGTTTCGAGAAATGATTCGCCAGTTCAACCCCGAATACACCCTTCCATCCAGAACCCATTTCACCCACTTGATGGAAAAGAAATATGAGACGATTGTTCTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580226.1 True 1895 lncRNA 0.38 4 13940426 13960190

Neighbor

gene id symbol gene type direction distance location
stab1 stab1 coding upstream 604 13852220 ~ 13939822 (+)
nisch nisch,LOC107593071 coding upstream 93794 13816855 ~ 13846632 (+)
nol8 nol8 coding upstream 147507 13776496 ~ 13792919 (+)
ogna ogn coding upstream 182903 13753968 ~ 13757523 (+)
omd omd coding upstream 191693 13745004 ~ 13748733 (+)
rbck1 rbck1 coding downstream 105431 14065621 ~ 14080135 (+)
bloc1s1 bloc1s1 coding downstream 131745 14091935 ~ 14096019 (+)
rdh5 rdh5,LOC107573570,LOC107586996,LOC107653177,LOC107745400 coding downstream 141865 14102055 ~ 14112510 (+)
gls2b gls2b,LOC108255189,LOC108431573 coding downstream 154286 14114476 ~ 14132007 (+)
smarcd1 smarcd1,LOC107694342 coding downstream 535073 14495263 ~ 14513735 (+)
G307161 NA non-coding upstream 416372 13522009 ~ 13524054 (+)
G307154 NA non-coding upstream 438595 13501466 ~ 13501831 (+)
G307079 NA non-coding upstream 589746 13350453 ~ 13350680 (+)
G306959 NA non-coding upstream 606181 13331687 ~ 13334245 (+)
G306961 NA non-coding upstream 607178 13332806 ~ 13333248 (+)
G307272 NA non-coding downstream 43418 14003608 ~ 14003831 (+)
G307262 pdhb,LOC107721006 non-coding downstream 54972 14015162 ~ 14016394 (+)
G307293 rpp14,LOC103374991 non-coding downstream 91645 14051835 ~ 14058202 (+)
G307281 NA non-coding downstream 136080 14096270 ~ 14096786 (+)
G307588 NA non-coding downstream 187951 14148141 ~ 14148445 (+)
ippk ippk,LOC107755999,LOC106566243 other upstream 247514 13674354 ~ 13692912 (+)
G306480 tuba1c,LOC103148207,LOC106920718,LOC102311436,LOC101065103 other upstream 1477890 12457601 ~ 12462536 (+)
G306103 NA other upstream 2424613 11515059 ~ 11515813 (+)
G305955 iqsec1 other upstream 2459326 11480669 ~ 11481100 (+)
G305869 NA other upstream 2614066 11325604 ~ 11326360 (+)
asic1b asic1,asic1b,LOC107721241,LOC107569540 other downstream 219593 14179783 ~ 14476817 (+)
gpd1b gpd1,gpd1b,LOC107698578,LOC107727040,LOC107721242,LOC107694423 other downstream 554402 14514592 ~ 14524976 (+)
dag1 dag1,LOC107757307,LOC107592827,LOC108415278,LOC108415277 other downstream 1796700 15756890 ~ 15799890 (+)
amigo3 amigo3 other downstream 2529171 16489361 ~ 16501684 (+)
LOC113537865 LOC108280979 other downstream 3300789 17260979 ~ 17263663 (+)

Expression


Co-expression Network