LOC117599922


Basic Information

Item Value
gene id LOC117599922
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047614.1
NCBI id CM018560.1
chromosome length 21552800
location 9700009 ~ 9704373 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580262.1
ATTAATATATGGATTTTGAACAAACAGTTAGTGAAACTTGAAAATCTAGTGAGCAAacttaacaaaaaacaaaaaactgagaACAGACCTGGACCTTGTCTGAACATGCCAGAGCCAGACCACGCCTATAGGAGGAGAAGCAACAGTAGAAACGAACAACGAAGGAACAAACGCGAGTGCACACATTAAAGATGCCCCAATGTCTGAGTTAACCAAACTTCGGATCATTCTTCAAGACCATGACACTTGTAAATTGGATTTGCCTCATGGAATCCCTGGGACTGTGGGCAAGCTCGAGTCTGTTGTGAGAGAGACATTCGGGCTTAATGGGAACCTAACTTTGCATTATAAGGATCCTGATTTTGGAGATGAATATTTTTCTTACCTCAACAAGTGAACTCAAGGACAAGGACACAATTAAGGTGGTACAGACCAGAGAGAACTGCGGTGGGTGGTGAAGACAGCCCAGTGTATCATTGGAGTGAAAATCTGGACCTGGAACAAATCTACGTCAGCTGCTGCTTTAAGAAAACCCTCAGCATCATCTGGGACCCATCCCACCCTGGACACTCCCTGTTTGTCCCCTTGCCATTGGGGAAATGCTActggtccacacacacacacacacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580262.1 True 661 lncRNA 0.45 2 9700009 9704373

Neighbor

gene id symbol gene type direction distance location
lmod1b lmod1 coding upstream 126720 9568051 ~ 9573289 (+)
ipo9 ipo9 coding upstream 211980 9437233 ~ 9488029 (+)
kdm5ba kdm5b,LOC108254769,LOC107600688,LOC107749493 coding upstream 264128 9410252 ~ 9435881 (+)
rabif rabif,LOC107601129 coding upstream 290121 9407525 ~ 9409888 (+)
LOC113539578 LOC108410710,LOC107727873,LOC107560790,LOC107685706,LOC107655073,LOC107749489 coding upstream 320024 9358819 ~ 9379985 (+)
LOC113539559 LOC100304472,LOC108440331,LOC107749469,LOC108440330 coding downstream 391157 10095530 ~ 10099522 (+)
gnl3l gnl3l coding downstream 397941 10102314 ~ 10138886 (+)
mon1bb LOC108255044,LOC107564673,LOC107727858,LOC108444170,LOC107691359,LOC107749456,LOC107685668 coding downstream 576147 10280520 ~ 10289815 (+)
ppcs ppcs coding downstream 1356635 11061008 ~ 11064101 (+)
cpne1 LOC108254857,LOC108424674,LOC107727818,LOC107691350,LOC107685660,LOC107749446 coding downstream 1374687 11079060 ~ 11107165 (+)
G305069 NA non-coding upstream 8509 9691297 ~ 9691500 (+)
G305068 NA non-coding upstream 9815 9689990 ~ 9690194 (+)
G305030 NA non-coding upstream 87457 9606546 ~ 9612552 (+)
LOC113539661 NA non-coding upstream 96144 9595128 ~ 9603865 (+)
G304949 NA non-coding upstream 123228 9575422 ~ 9576781 (+)
G305188 NA non-coding downstream 308170 10012543 ~ 10013541 (+)
G305214 NA non-coding downstream 330022 10034395 ~ 10034599 (+)
G305218 NA non-coding downstream 344851 10049224 ~ 10049439 (+)
G305228 NA non-coding downstream 364060 10068433 ~ 10068637 (+)
G305232 NA non-coding downstream 367876 10072249 ~ 10072468 (+)
shisa4 shisa4,LOC108254774,LOC107552307 other upstream 148248 9536125 ~ 9551761 (+)
nfasca nfasc other upstream 1138307 8481095 ~ 8561702 (+)
lrrn2 lrrn2,LOC108425772,LOC107739267,LOC107603068,LOC107675837 other upstream 1673080 7974591 ~ 8026929 (+)
cpne5b LOC108436414,LOC108280970,LOC103367600 other upstream 2920651 6663968 ~ 6779358 (+)
tmem167b tmem167b,LOC107592590,LOC107555997 other upstream 3197373 6498060 ~ 6502636 (+)
G305515 NA other downstream 808298 10512671 ~ 10513270 (+)
LOC113539694 LOC105418794,LOC108431938,LOC108412963,LOC105419408,LOC108415465,LOC106522608 other downstream 1059901 10764274 ~ 10773442 (+)
G305727 NA other downstream 1407366 11111739 ~ 11112518 (+)
unm_sa1614 LOC108254916,LOC108424671,LOC107566077,LOC107691346 other downstream 1436863 11141236 ~ 11178473 (+)
dynlrb1 dynlrb1,LOC106565026 other downstream 1510379 11214752 ~ 11221540 (+)

Expression


Co-expression Network