G312175


Basic Information

Item Value
gene id G312175
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 187105 ~ 188110 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU369778
GTGAGAGAGACGAAGCGAAGGAGAGAGTGAACATCTCCGCTGTGCTGTCGGGGCGAAGAGGTTGTTAACTCTTGTGGGAAGAAGCTTCTTCACCAAACAGCTGCAGCTTGAATAATACGTAGCGTTTTCACCCACAGATCCTTAAGGAAGTCGgTTTAAGGGCTTCCTTGAGCGCCGTGTGTGTCGAGGTGAGTTGATGTTCAGCTCGGCTTCACGACACAGCGTCGCTTTTTGGCACATGAACACcataaacatcataaacacaataaacaccgTAAACACGataaacaccatcaacaccaggCTAAACACATGCGCAGTGAGAAGTAGACGGACTACTTCGAGGACCTGGAA
>TU369779
TGCTGATTGGTCGCTCCCCAGCTGCGCTACGTATTCTTCACTGAGGAGCCATTTTGTTGTGAGAGAGACGAAGCGAAGGAGAGAGTGAACATCTCCGCTGTGCTGTCGGGGCGAAGAGGTTGTTAACTCTTGTGGGAAGAAGCTTCTTCACCAAACAGCTGCAGCTTGAATAATACGTAGCGTTTTCACCCACAGATCCTTAAGGAAGTCGgTTTAAGGGCTTCCTTGAGCGCCGTGTGTGTCGAGGTGAGTTGATGTTCAGCTCGGCTTCACGACACAGCGTCGCTTTTTGGCACATGAACACcataaacatcataaacacaataaacaccgTAAACACGataaacaccatcaacaccaggCTAAACACATGCGCAGTGAGAAGTAGACGGACTACTTCGAGGACCTGGAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU369778 False 354 lncRNA 0.49 2 187163 188110
TU369779 True 412 lncRNA 0.49 2 187105 188110

Neighbor

gene id symbol gene type direction distance location
kpna5 kpna5,LOC107552832,LOC107711738 coding upstream 155250 21279 ~ 31855 (+)
rwdd1 rwdd1,LOC107587776,LOC107704860,LOC107700695 coding upstream 178770 4175 ~ 8335 (+)
LOC117595741 LOC108280375,LOC108280376 coding downstream 29817 217927 ~ 543043 (+)
dop1a dopey1,LOC107587763,LOC107704948,LOC107597122 coding downstream 51168 239278 ~ 272041 (+)
me1 me1,LOC108280372,LOC107700750,LOC107587764,LOC107704946,LOC107716854,LOC106583951 coding downstream 149225 337335 ~ 388347 (+)
usp45 usp45 coding downstream 269031 457141 ~ 488658 (+)
LOC113543344 LOC108280269 coding downstream 317517 505627 ~ 522026 (+)
G312195 akirin1,LOC102785600 non-coding upstream 4063 180593 ~ 183042 (+)
G312194 NA non-coding upstream 7131 179675 ~ 179974 (+)
LOC113525279 NA non-coding upstream 23011 160505 ~ 164094 (+)
LOC113525271 NA non-coding upstream 65627 116132 ~ 121478 (+)
G312179 NA non-coding upstream 73997 112817 ~ 113108 (+)
G312237 NA non-coding downstream 294817 482927 ~ 483213 (+)
G312221 NA non-coding downstream 386131 574241 ~ 576923 (+)
G312280 NA non-coding downstream 523384 711494 ~ 712297 (+)
G312277 NA non-coding downstream 527529 715639 ~ 759328 (+)
G312283 NA non-coding downstream 551353 739463 ~ 743129 (+)
G312191 NA other upstream 11564 174238 ~ 175541 (+)
G312172 NA other upstream 92180 93899 ~ 94925 (+)
G312171 NA other upstream 94190 92484 ~ 92915 (+)
pnrc2 pnrc2 other downstream 1429 189539 ~ 193534 (+)
snap91a snap91,LOC108280370 other downstream 86712 274822 ~ 318962 (+)
atpv0e2 LOC108280382,LOC100691746,LOC107588449,LOC107551367,LOC107706116 other downstream 225509 413619 ~ 501389 (+)
LOC113543349 iws1 other downstream 516668 704778 ~ 717291 (+)
jph1b jph1b,jph1,LOC108280498,LOC107550709,LOC108435725,LOC107584332,LOC107746914,LOC107686034,LOC107664083,LOC107732545 other downstream 632420 820530 ~ 847017 (+)

Expression


Co-expression Network