pnrc2 (pnrc2)


Basic Information

Item Value
gene id pnrc2
gene name pnrc2
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 189539 ~ 193534 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU369780
TGTAAGTTTAAGAAACacagatttttgtgattttagcCGCTTCCTAAATAAATTAACTCTGTGCGTGTGCTTATATGGAAATTTCTATACtttttcataaacatttcaCATTATGTCATTACAGTTTAATTCCTCAAATCAGGCCTGTTGCTGCAAGATTAAAAACTCTGGCTGATTTTCCCACTTCCTCTATACGCTTttcacacttcctgttcctgcGCAGTGTCTCGCCCGTCCCTTAAACAGCGCGTGTAGTAGCGTCTATAGCGTTCTCGTCTCCGTGTTCTCGCCGCCGCCGTAGCAGCCCTACAGGAACATGGGTTTCTTCTGAGGCGACTTCCTTCCAGAAAGCAGATTAATTAAAGTCTTTGTCCCGGCGCTTGAggaagtgaattattactaaCTTCAGGGTTAATAAACAGGCTGTGAGTTCTGACCTGAAACTACGAACAGCCACTAAAGCACAATATTACAGTTACAATACagaatcctcacacacacacacacacacacacacacacgcacacacacacactgctggaaaaAGGCTTTCCTGTTAGAATTCAGCTTTCCTTAATTGTTTTCAggcttttaataattttttcctGCCTCAGACCTGTTTATTCTTGTAATTCTGTGTAATagtgagatttattttattttgttttaaacacagtCACATCATTTCTACGTGTTTCTGCTGTAATTacgagggtttttttttcaccttttgtcAGCATAAAGGAGATCATGTCTAATGGACTGGTCTCTGATTTCCTACATATAATTCTTATACACAGTGTTTATGACAATAAATCATATTAATTGCGTAACAGAATGGGATTTCTTAAAGCcctgttgtgtgtttattgtgtaagGCAGGGCTGATTTTACTCTTTTATTGCGCTTTATAAATAAGTGTTCAGGTGGAAGCAGTAGACTTGATGTGTAAGTTCTATCATGGCTGCAGTAACACAGGCTCTAATCCCACgtgatgtatttgtttttcacgTTATCAGGTGACATCCAGCACAATCAGAATGGGAGGCGGTGAGAGATACAACATTCCAGCGTCCCATCCCGATCACTCTGCCTCCAAAAAGCACCACCCCGTCGGCAAGTCCAAGCCGAGGAGCCGGAACCAGCACGCCGGCGCGTTTTCTGCGTCTCCCGGTGCTGCGACGACTCCTGAGAAACTGGCTGAGAAGAAGAGCGGCGGCTCGGTTCGCTTCTCCTACAGCGATCAGTGCTGGGGAGGAGCCGTGACTCACCTGAACAACATCCTGGTCACGCAGTGCAGCCACGCCTACGCCGGCGCCAAATTCAGCGAGCCGCCTTCCCCTAGCGTACTCCCTAAACCTCCTAGCCACTGGGTTTCCCTTCCCATGATTCCCTGCGACCGGCGCGAGATGATGGCCTTTCAGTTAAAGAGCCTCCTCAAAGTGCAGGCGTGAAAAAAATACACGACGTTAACGAACCAGCGACTTCACGCCAGGCTCCGCCCCTCCTGCAACGCTGCAGCGCCGTGATTGTAACCGGGACCATTTCTGCAAACGGTTCCTCTTTAactgtatatagttttttttaaacgtttaGGACAGGATCGCGTCGCTGCAGCCTTACAGCAGGGAGGAGCGCTTAACGGAGTCGAACGAAACGCTCAACTGGATTCCCTTCTCGCTAACGTTGTGGTGTTGTTTTTTATGTTGGCCGTTAatgaaagtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagggtgaggGGACAAATCATCGCTTTACACGACGTGCATCACAATCATCACAtaactttgtttatatttactaCAGGAAGCAGCACAGCGTTAAACAGCAATAGTGTTATTATTAAAGCGCTGATACGTGCGTTTTAACTCCAGTCATCTCGCCCTCGCTTTTACTTTCACGCCTTTTTCTCGCGCACGCCTGGCGATCTCGCGCACACGAGCCTCGTCTCCGTTTATACATCAGAGAAAATCAATCTGTTTTTGGGGGAGAGAAAAATTTTGATGAAAACCAAATGcgaaagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgagagagagatttatccTCACAATGTGGCCCACACACACCTTGTGCTTTCAGCTCCTGTACTTTTATAATTGGCGCTGTGCGCACTGCACTATGGGGGCTGAAATTCAACAAGGTGTGTAAATAAGCAGCATCtcctttgttttgctttgttccATCAATCAGAAGTGTTGAAGTTTACTGAAGTACTATAGTTTCACTTACAGCGAGTCCCCTTGGTCACGTGGTCACAGACGTACGTGTGCTGATGATCTGTAAAACGATGTTGCGCGCTGTTACGCGTGTACGGTGTAGCGTAGAGTTCCGTTCATGTCCAGTTTATTTTCGGGCCGGTTTAAAGGAGCGCTTCTAAACGCTCTTATTAAAGCAGTCATCAGGAACAGCACCGCAGTCAGCCGCGATGTCAGCACACGTTTGTCGAGTTTCCTGGATTTACACCAGAGAGGAGATTTGAACGCAATCAGTGGCGTGCGGCAGCTTTATGGCGAACGATGCGGAGGAAGGCGTACGGAGGCGAGACACAGGGGTGTTGATCATCTCGCTGTCTGACTCCGTTCGCCTGTTTGCCATGCGGCGCGTCGTTAAAGTCGCTTTGTAGCATTTAAACTGTTTACGTTTTTACAAAAGGGGCCAAAGTTTTAGACTCTTTTTGACTCGTTCTATGACTTGCACTGTGTGTCCAtgttgtgagtgtgtagtgaaacCCCCAGTTCTTATTTCCGCATTCTGTAACGCGTGTAGGCGTGTGCCACATCACATCCACGTCCGATCTTATAACTTCGTAATGATACTGTACCTAAAAATTGgaaatgatttgaaatgaattataTTGATGCTGTATGGATTATCACAGGTTTAGATGTCAGTACAAATACAATCGCATCACTTCCTCTTCAACAGGTTTACTTTATCCCTGATAAGTTTTGGTAATAACTGGATTATCGCGATTATACCGTGTATGTGATTATCGGCACATGCCTGAACACCGCGTACCTGTCCTGCACACGGCGCGTTAACGGCCAGCTGGAAGACGACTCTTTGTGCATCAGAGCCgtgtaaataatgaaatgtataaaaCCTTGTAGCATATTGTACATTAAAACGCAGGGTTGTTTTAAACCTGCCAGAAAGTATTTTTAGTAATAACACTGAATGTAAGTCACGCAGAAGACGTGGCTTGATTTGAAATgctgaaattatttttgtttaaaaaaaaaagaaaaaaagaaagaaaatatttgcCTGTAGCGTGTGGAAGTCCCTCTGCGCTGTGCCGTGTCTCCGCCAGTGATCCTGCACAggactttattttacagaacGCACAGAGCAGAGGAGAAAACAAGCTTTAAGTGcaaagatttttaaacaaaaaatatatatgtagttAAAATTTTGCAGGCTTTTACACTCACACCAGCtccatttttaaataagaaccatgtttttacaaaaaaataaaactttttttttattgattacaCTTTCagtagattttaatttaaatgactCGGTGTATCCAGGA
>TU369781
TGTAAGTTTAAGAAACacagatttttgtgattttagcCGCTTCCTAAATAAATTAACTCTGTGCGTGTGCTTATATGGAAATTTCTATACtttttcataaacatttcaCATTATGTCATTACAGTTTAATTCCTCAAATCAGGCCTGTTGCTGCAAGATTAAAAACTCTGGCTGATTTTCCCACTTCCTCTATACGCTTttcacacttcctgttcctgcGCAGTGTCTCGCCCGTCCCTTAAACAGCGCGTGTAGTAGCGTCTATAGCGTTCTCGTCTCCGTGTTCTCGCCGCCGCCGTAGCAGCCCTACAGGAACATGGGTTTCTTCTGAGGCGACTTCCTTCCAGAAAGCAGATTAATTAAAGTCTTTGTCCCGGCGCTTGAggaagtgaattattactaaCTTCAGGGTTAATAAACAGGCTGTGAGTTCTGACCTGAAACTACGAACAGCCACTAAAGCACAATATTACAGTTACAATACagaatcctcacacacacacacacacacacacacacacgcacacacacacactgctggaaaaAGGCTTTCCTGTTAGAATTCAGCTTTCCTTAATTGTTTTCAggcttttaataattttttcctGCCTCAGACCTGTTTATTCTTGTAATTCTGTGTAATagtgagatttattttattttgttttaaacacagtCACATCATTTCTACGTGTTTCTGCTGTAATTacgagggtttttttttcaccttttgtcAGCATAAAGGAGATCATGTCTAATGGACTGGTCTCTGATTTCCTACATATAATTCTTATACACAGTGTTTATGACAATAAATCATATTAATTGCGTAACAGAATGGGATTTCTTAAAGCcctgttgtgtgtttattgtgtaagGCAGGGCTGATTTTACTCTTTTATTGCGCTTTATAAATAAGTGTTCAGGTGGAAGCAGTAGACTTGATGTGTAAGTTCTATCATGGCTGCAGTAACACAGGCTCTAATCCCACgtgatgtatttgtttttcacgTTATCAGGTGACATCCAGCACAATCAGAATGGGAGGCGGTGAGAGATACAACATTCCAGCGTCCCATCCCGATCACTCTGCCTCCAAAAAGCACCACCCCGTCGGCAAGTCCAAGCCGAGGAGCCGGAACCAGCACGCCGGCGCGTTTTCTGCGTCTCCCGGTGCTGCGACGACTCCTGAGAAACTGGCTGAGAAGAAGAGCGGCGGCTCGGTTCGCTTCTCCTACAGCGATCAGTGCTGGGGAGGAGCCGTGACTCACCTGAACAACATCCTGGTCACGCAGTGCAGCCACGCCTACGCCGGCGCCAAATTCAGCGAGCCGCCTTCCCCTAGCGTACTCCCTAAACCTCCTAGCCACTGGGTTTCCCTTCCCATGATTCCCTGCGACCGGCGCGAGATGATGGCCTTTCAGTTAAAGAGCCTCCTCAAAGTGCAGGCGTGAAAAAAATACACGACGTTAACGAACCAGCGACTTCACGCCAGGCTCCGCCCCTCCTGCAGCCTTACAGCAGGGAGGAGCGCTTAACGGAGTCGAACGAAACGCTCAACTGGATTCCCTTCTCGCTAACGTTGTGGTGTTGTTTTTTATGTTGGCCGTTAatgaaagtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagggtgaggGGACAAATCATCGCTTTACACGACGTGCATCACAATCATCACAtaactttgtttatatttactaCAGGAAGCAGCACAGCGTTAAACAGCAATAGTGTTATTATTAAAGCGCTGATACGTGCGTTTTAACTCCAGTCATCTCGCCCTCGCTTTTACTTTCACGCCTTTTTCTCGCGCACGCCTGGCGATCTCGCGCACACGAGCCTCGTCTCCGTTTATACATCAGAGAAAATCAATCTGTTTTTGGGGGAGAGAAAAATTTTGATGAAAACCAAATGcgaaagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgagagagagatttatccTCACAATGTGGCCCACACACACCTTGTGCTTTCAGCTCCTGTACTTTTATAATTGGCGCTGTGCGCACTGCACTATGGGGGCTGAAATTCAACAAGGTGTGTAAATAAGCAGCATCtcctttgttttgctttgttccATCAATCAGAAGTGTTGAAGTTTACTGAAGTACTATAGTTTCACTTACAGCGAGTCCCCTTGGTCACGTGGTCACAGACGTACGTGTGCTGATGATCTGTAAAACGATGTTGCGCGCTGTTACGCGTGTACGGTGTAGCGTAGAGTTCCGTTCATGTCCAGTTTATTTTCGGGCCGGTTTAAAGGAGCGCTTCTAAACGCTCTTATTAAAGCAGTCATCAGGAACAGCACCGCAGTCAGCCGCGATGTCAGCACACGTTTGTCGAGTTTCCTGGATTTACACCAGAGAGGAGATTTGAACGCAATCAGTGGCGTGCGGCAGCTTTATGGCGAACGATGCGGAGGAAGGCGTACGGAGGCGAGACACAGGGGTGTTGATCATCTCGCTGTCTGACTCCGTTCGCCTGTTTGCCATGCGGCGCGTCGTTAAAGTCGCTTTGTAGCATTTAAACTGTTTACGTTTTTACAAAAGGGGCCAAAGTTTTAGACTCTTTTTGACTCGTTCTATGACTTGCACTGTGTGTCCAtgttgtgagtgtgtagtgaaacCCCCAGTTCTTATTTCCGCATTCTGTAACGCGTGTAGGCGTGTGCCACATCACATCCACGTCCGATCTTATAACTTCGTAATGATACTGTACCTAAAAATTGgaaatgatttgaaatgaattataTTGATGCTGTATGGATTATCACAGGTTTAGATGTCAGTACAAATACAATCGCATCACTTCCTCTTCAACAGGTTTACTTTATCCCTGATAAGTTTTGGTAATAACTGGATTATCGCGATTATACCGTGTATGTGATTATCGGCACATGCCTGAACACCGCGTACCTGTCCTGCACACGGCGCGTTAACGGCCAGCTGGAAGACGACTCTTTGTGCATCAGAGCCgtgtaaataatgaaatgtataaaaCCTTGTAGCATATTGTACATTAAAACGCAGGGTTGTTTTAAACCTGCCAGAAAGTATTTTTAGTAATAACACTGAATGTAAGTCACGCAGAAGACGTGGCTTGATTTGAAATgctgaaattatttttgtttaaaaaaaaaagaaaaaaagaaagaaaatatttgcCTGTAGCGTGTGGAAGTCCCTCTGCGCTGTGCCGTGTCTCCGCCAGTGATCCTGCACAggactttattttacagaacGCACAGAGCAGAGGAGAAAACAAGCTTTAAGTGcaaagatttttaaacaaaaaatatatatgtagttAAAATTTTGCAGGCTTTTACACTCACACCAGCtccatttttaaataagaaccatgtttttacaaaaaaataaaactttttttttattgattacaCTTTCagtagattttaatttaaatgactCGGTGTATCCAGGA
>XM_034314800.1
TACATATAATTCTTATACACAGTGTTTATGACAATAAATCATATTAATTGCGTAACAGAATGGGATTTCTTAAAGCcctgttgtgtgtttattgtgtaagGCAGGGCTGATTTTACTCTTTTATTGCGCTTTATAAATAAGTGTTCAGGTGGAAGCAGTAGACTTGATGTGTAAGTTCTATCATGGCTGCAGTAACACAGGCTCTAATCCCACgtgatgtatttgtttttcacgTTATCAGGTGACATCCAGCACAATCAGAATGGGAGGCGGTGAGAGATACAACATTCCAGCGTCCCATCCCGATCACTCTGCCTCCAAAAAGCACCACCCCGTCGGCAAGTCCAAGCCGAGGAGCCGGAACCAGCACGCCGGCGCGTTTTCTGCGTCTCCCGGTGCTGCGACGACTCCTGAGAAACTGGCTGAGAAGAAGAGCGGCGGCTCGGTTCGCTTCTCCTACAGCGATCAGTGCTGGGGAGGAGCCGTGACTCACCTGAACAACATCCTGGTCACGCAGTGCAGCCACGCCTACGCCGGCGCCAAATTCAGCGAGCCGCCTTCCCCTAGCGTACTCCCTAAACCTCCTAGCCACTGGGTTTCCCTTCCCATGATTCCCTGCGACCGGCGCGAGATGATGGCCTTTCAGTTAAAGAGCCTCCTCAAAGTGCAGGCGTGAAAAAAATACACGACGTTAACGAACCAGCGACTTCACGCCAGGCTCCGCCCCTCCTGCAGCCTTACAGCAGGGAGGAGCGCTTAACGGAGTCGAACGAAACGCTCAACTGGATTCCCTTCTCGCTAACGTTGTGGTGTTGTTTTTTATGTTGGCCGTTAatgaaagtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtgtgtgtgagggtgaggGGACAAATCATCGCTTTACACGACGTGCATCACAATCATCACAtaactttgtttatatttactaCAGGAAGCAGCACAGCGTTAAACAGCAATAGTGTTATTATTAAAGCGCTGATACGTGCGTTTTAACTCCAGTCATCTCGCCCTCGCTTTTACTTTCACGCCTTTTTCTCGCGCACGCCTGGCGATCTCGCGCACACGAGCCTCGTCTCCGTTTATACATCAGAGAAAATCAATCTGTTTTTGGGGGAGAGAAAAATTTTGATGAAAACCAAATGcgaaagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgagtgtgtgtgtgtgtgagtgagtgagagagagatttatccTCACAATGTGGCCCACACACACCTTGTGCTTTCAGCTCCTGTACTTTTATAATTGGCGCTGTGCGCACTGCACTATGGGGGCTGAAATTCAACAAGGTGTGTAAATAAGCAGCATCtcctttgttttgctttgttccATCAATCAGAAGTGTTGAAGTTTACTGAAGTACTATAGTTTCACTTACAGCGAGTCCCCTTGGTCACGTGGTCACAGACGTACGTGTGCTGATGATCTGTAAAACGATGTTGCGCGCTGTTACGCGTGTACGGTGTAGCGTAGAGTTCCGTTCATGTCCAGTTTATTTTCGGGCCGGTTTAAAGGAGCGCTTCTAAACGCTCTTATTAAAGCAGTCATCAGGAACAGCACCGCAGTCAGCCGCGATGTCAGCACACGTTTGTCGAGTTTCCTGGATTTACACCAGAGAGGAGATTTGAACGCAATCAGTGGCGTGCGGCAGCTTTATGGCGAACGATGCGGAGGAAGGCGTACGGAGGCGAGACACAGGGGTGTTGATCATCTCGCTGTCTGACTCCGTTCGCCTGTTTGCCATGCGGCGCGTCGTTAAAGTCGCTTTGTAGCATTTAAACTGTTTACGTTTTTACAAAAGGGGCCAAAGTTTTAGACTCTTTTTGACTCGTTCTATGACTTGCACTGTGTGTCCAtgttgtgagtgtgtagtgaaacCCCCAGTTCTTATTTCCGCATTCTGTAACGCGTGTAGGCGTGTGCCACATCACATCCACGTCCGATCTTATAACTTCGTAATGATACTGTACCTAAAAATTGgaaatgatttgaaatgaattataTTGATGCTGTATGGATTATCACAGGTTTAGATGTCAGTACAAATACAATCGCATCACTTCCTCTTCAACAGGTTTACTTTATCCCTGATAAGTTTTGGTAATAACTGGATTATCGCGATTATACCGTGTATGTGATTATCGGCACATGCCTGAACACCGCGTACCTGTCCTGCACACGGCGCGTTAACGGCCAGCTGGAAGACGACTCTTTGTGCATCAGAGCCgtgtaaataatgaaatgtataaaaCCTTGTAGCATATTGTACATTAAAACGCAGGGTTGTTTTAAACCTGCCAGAAAGTATTTTTAGTAATAACACTGAATGTAAGTCACGCAGAAGACGTGGCTTGATTTGAAATgctgaaattatttttgtttaaaaaaaaaagaaaaaaagaaagaaaatatttgcCTGTAGCGTGTGGAAGTCCCTCTGCGCTGTGCCGTGTCTCCGCCAGTGATCCTGCACAggactttattttacagaacGCACAGAGCAGAGGAGAAAACAAGCTTTAAGTGcaaagatttttaaacaaaaaatatatatgtagttAAAATTTTGCAGGCTTTTACACTCACACCAGCtccatttttaaataagaaccatgtttttacaaaaaaataaaactttttttttattgattacaCTTTCagtagattttaatttaaatgactCGGTGTATCCAGGAGCGAGTTTTTTCCTCTGCAGACTCGCATTTGAATACGCCCgctgtaatgtttttgttttttttttttaaattaattatcttaattttttcactttcctgtgtgtgtgtgtaaaagtctCTCAGCTTTCCCTGATAATTGGCTTTGAATTTGTCCCaaacttttaaaatgtcactttaagagggaaaaaaaagaaacttgaaGCCCATTTTATTGTAATTGATATGTAGTAAAGTTTTTAAAGCACTGTCcaatttggtaaaaaaaaaaaataataataaaactccTCCCCTTTCACCCCC

Function

symbol description
pnrc2 Acts upstream of or within nuclear-transcribed mRNA catabolic process. Predicted to be located in cytoplasm. Predicted to be active in P-body and nucleus. Is expressed in nervous system; otic vesicle; and trunk. Orthologous to human PNRC2 (proline rich nuclear receptor coactivator 2).

NR:

description
proline-rich nuclear receptor coactivator 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU369780 True 3617 TUCP 0.44 3 189539 193234
TU369781 False 3515 TUCP 0.44 4 189539 193234
XM_034314800.1 False 3114 mRNA 0.44 2 190317 193534

Neighbor

gene id symbol gene type direction distance location
kpna5 kpna5,LOC107552832,LOC107711738 coding upstream 157684 21279 ~ 31855 (+)
rwdd1 rwdd1,LOC107587776,LOC107704860,LOC107700695 coding upstream 181204 4175 ~ 8335 (+)
LOC117595741 LOC108280375,LOC108280376 coding downstream 24393 217927 ~ 543043 (+)
dop1a dopey1,LOC107587763,LOC107704948,LOC107597122 coding downstream 45744 239278 ~ 272041 (+)
me1 me1,LOC108280372,LOC107700750,LOC107587764,LOC107704946,LOC107716854,LOC106583951 coding downstream 143801 337335 ~ 388347 (+)
usp45 usp45 coding downstream 263607 457141 ~ 488658 (+)
LOC113543344 LOC108280269 coding downstream 312093 505627 ~ 522026 (+)
G312175 NA non-coding upstream 1429 187105 ~ 188110 (+)
G312195 akirin1,LOC102785600 non-coding upstream 6497 180593 ~ 183042 (+)
G312194 NA non-coding upstream 9565 179675 ~ 179974 (+)
LOC113525279 NA non-coding upstream 25445 160505 ~ 164094 (+)
LOC113525271 NA non-coding upstream 68061 116132 ~ 121478 (+)
G312237 NA non-coding downstream 289393 482927 ~ 483213 (+)
G312221 NA non-coding downstream 380707 574241 ~ 576923 (+)
G312280 NA non-coding downstream 517960 711494 ~ 712297 (+)
G312277 NA non-coding downstream 522105 715639 ~ 759328 (+)
G312283 NA non-coding downstream 545929 739463 ~ 743129 (+)
G312191 NA other upstream 13998 174238 ~ 175541 (+)
G312172 NA other upstream 94614 93899 ~ 94925 (+)
G312171 NA other upstream 96624 92484 ~ 92915 (+)
snap91a snap91,LOC108280370 other downstream 81288 274822 ~ 318962 (+)
atpv0e2 LOC108280382,LOC100691746,LOC107588449,LOC107551367,LOC107706116 other downstream 220085 413619 ~ 501389 (+)
LOC113543349 iws1 other downstream 511244 704778 ~ 717291 (+)
jph1b jph1b,jph1,LOC108280498,LOC107550709,LOC108435725,LOC107584332,LOC107746914,LOC107686034,LOC107664083,LOC107732545 other downstream 626996 820530 ~ 847017 (+)
paxip1 paxip1,LOC106569237,LOC107550719 other downstream 935375 1128909 ~ 1147376 (+)

Expression


Co-expression Network