G312177


Basic Information

Item Value
gene id G312177
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 111771 ~ 112458 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU369782
GAACCGCAGAGAGGAACAAcggagctcacacacactcatacacactgctgcgcgcacacacacacacacacacacacacacactgcgcgcGGAGACGTGCAGACAGAAACGGAAGCAGCTCTGAGCGGCTGGAGAATCTGCCGGTGTAATCGGTACTAAACCGCGTATCGCGGTACCGGAGCGGAAATCGCGCCTGGAGCTCGAGGAAACTTTTCCTTCAGTCTCTTTAATACAGctgtgatattaaaaaaacagaacaaagatTTTTGGTGATCTGTTGCTCGGCTCCGGCGTGGACTGTGTGGAACTGAACCCGGATTTAATAACcgtggatttttttaataattaatttttgcGCACAGAGGATCTGagcctcaggtgtgtgtgtgtgtgtgtgtgtgtgtgaacatggagGTGTTACTATGACCCCGGACTTCACCACTGTCACTGCCGCTGCAGGTCACACACtctaacttttatttattcagcattttgGGGTTTTTCGGGTTTCTGTTTGAGAGCCAGTGAGCTGAGAGTCTTTCTGGGAAATTCAGCCATGAACTTTGTGGTTTATTGGGCTCAGATATTCCTGGCAGTGCTGCTGAACGCCTCGGCTCTGAAGGTGAGTTTAATTCATTCACAGTGTacatcagtttattttattattagtttatataGAAAACTCACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU369782 True 688 lncRNA 0.47 1 111771 112458

Neighbor

gene id symbol gene type direction distance location
kpna5 kpna5,LOC107552832,LOC107711738 coding upstream 79916 21279 ~ 31855 (+)
rwdd1 rwdd1,LOC107587776,LOC107704860,LOC107700695 coding upstream 103436 4175 ~ 8335 (+)
LOC117595741 LOC108280375,LOC108280376 coding downstream 105469 217927 ~ 543043 (+)
dop1a dopey1,LOC107587763,LOC107704948,LOC107597122 coding downstream 126820 239278 ~ 272041 (+)
me1 me1,LOC108280372,LOC107700750,LOC107587764,LOC107704946,LOC107716854,LOC106583951 coding downstream 224877 337335 ~ 388347 (+)
usp45 usp45 coding downstream 344683 457141 ~ 488658 (+)
LOC113543344 LOC108280269 coding downstream 393169 505627 ~ 522026 (+)
G312179 NA non-coding downstream 359 112817 ~ 113108 (+)
LOC113525271 NA non-coding downstream 3674 116132 ~ 121478 (+)
LOC113525279 NA non-coding downstream 48047 160505 ~ 164094 (+)
G312193 NA non-coding downstream 65385 177843 ~ 266537 (+)
G312194 NA non-coding downstream 67217 179675 ~ 179974 (+)
G312172 NA other upstream 16846 93899 ~ 94925 (+)
G312171 NA other upstream 18856 92484 ~ 92915 (+)
G312191 NA other downstream 61780 174238 ~ 175541 (+)
pnrc2 pnrc2 other downstream 77081 189539 ~ 193534 (+)
snap91a snap91,LOC108280370 other downstream 162364 274822 ~ 318962 (+)
atpv0e2 LOC108280382,LOC100691746,LOC107588449,LOC107551367,LOC107706116 other downstream 301161 413619 ~ 501389 (+)
LOC113543349 iws1 other downstream 592320 704778 ~ 717291 (+)

Expression


Co-expression Network