atpv0e2 (LOC108280382,LOC100691746,LOC107588449,LOC107551367,LOC107706116)


Basic Information

Item Value
gene id atpv0e2
gene name LOC108280382,LOC100691746,LOC107588449,LOC107551367,LOC107706116
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 413619 ~ 501389 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU369833
TGTAGCGCAGCTTGGGCTCTGAGGTCGCGCTTCGGCTCGTGACGGCggatgaaatattaatatttaaagtgtttattgtgATAAAGAGAATAAAGTGAAGATGGTTTATCACTCTGTAGCGCTGCCGCTCATCTGCTTCACCACGCTGTGGGCTTTAGTCGGAGGCGTCGCGCCGTTTTTCGTTCCTAAAGGACCGAATAGAGGTGTGATCATTACCAGCCTGGTGCTGACGGCCGTGTGCTGCTATTTATTcTGGTTGGTTGCGTTCCTGGCGCAGGTGAACCCTCTGTTTGGACCGCAGCTGAAGAACGAGACCATCTGGTACCTGCGGTACTACTGGGAATAAAACGGAGgATTGTATCGGCTGCATGACGACGTCGTTCCATCGTTCACTTCCTGTTCGACATTCCCCTCCTGTGATGTGACTGAACGCGTTCTCTCCTCAGCGTAGCGTCAGCGCTCTTTACCTGAAACgtttaatttgtgtttgttgttttatttctgacgGAGGAGTGAAGTAaatacgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaacagtgaCAGTGTTGTGACGTGATGAAGATGTGCaatattagttaaaaaaaacctacttGAACGTTtatattatctctctctctctctttctctctctctctctctctctctctctctctctctctctctctctgtctctctctctctctctttctttctgtctctctcaccagcGTGACATCAAGCTActaatgaggttttttttaacgGCTCACAGAACACTAACGTCAGTAACGTCACTGAGGAAAGTGAACTTAATTAACACTGTCGTTATTTAGAGACTTTTTGTTCAACATGATTTTCAGGGTTAAGGATTAAACTCTCGGTCTGATTGGCACTGACGGAGTTTCAGATCTCTGTGGAAATGACGCGGGTTTATAATCGTTGTCGTGTATGTGCTGCTGATGTCTCtgtaaaacactgaataaaatcaGGATGG
>TU369834
TGTAGCGCAGCTTGGGCTCTGAGGTCGCGCTTCGGCTCGTGACGGCggatgaaatattaatatttaaagtgtttattgtgATAAAGAGAATAAAGTGAAGATGGTTTATCACTCTGTAGCGCTGCCGCTCATCTGCTTCACCACGCTGTGGGCTTTAGTCGGAGGCGTCGCGCCGTTTTTCGTTCCTAAAGGACCGAATAGAGGTGTGATCATTACCAGCCTGGTGCTGACGGCCGTGTGCTGCTATTTATTcTGGTTGGTTGCGTTCCTGGCGCAGGTGAACCCTCTGTTTGGACCGCAGCTGAAGAACGAGACCATCTGGTACCTGCGGTACTACTGGGAATAAAACGGAGgATTGTATCGGCTGCATGACGACGTCGTTCCATCGTTCACTTCCTGTTCGACATTCCCCTCCTGTGATGTGACTGAACGCGTTCTCTCCTCAGCGTAGCGTCAGCGCTCTTTACCTGAAACgtttaatttgtgtttgttgttttatttctgacgGAGGAGTGAAGTAaatacgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaacagtgaCAGTGTTGTGACGTGATGAAGATGTGCaatattagttaaaaaaaacctacttGAACGTTtatattatctctctctctctctttctctctctctctctctctctctctctctctctccctctctgtctctctctctctctccctctgtgtctctctctctctctctctctctgtctctgtctctgtctctgtctctctctctctctctctctgtgtgaccAACTTGTGATGTGTTTACGTAGCggtctatttatttatgtcgAGTTTATTTATTACGTTATTTATTTTAGAGTGTAAAGCTCAGAAATGTGATCCGGTTTCAccactcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgaatgctgagagaagctgtgtgtgtcGTTCTCTAAATGATTTCATGCTGTCACGATACGATGAATCGTCCAATCCAGTATCACGATATCTGCACATCAGTTTCTGATTTCTTTTCGCTGTTTATCTCGCGCATATTAACACTAACGCTGTCTCCCTGAACactcattcattattattattgttattattgttattattattgttattattattattattacagttcaTGGATTTCAGATTGCTGTCTGTGTAAATCTGgttatttattcctttatttttacTCTTCGACGTGGCTGCTTTGTTTCCATGGAGATCCACtgacatcctctctctctctctccctttttctctctctctctctttctctctctctgtttctctctctgtttctctctctccctttctctctctttctctctctctgtctctctctctctctctttctttctgtctctctcaccagcGTGACATCAAGCTActaatgaggttttttttaacgGCTCACAGAACACTAACGTCAGTAACGTCACTGAGGAAAGTGAACTTAATTAACACTGTCGTTATTTAGAGACTTTTTGTTCAACATGATTTTCAGGGTTAAGGATTAAACTCTCGGTCTGATTGGCACTGACGGAGTTTCAGATCTCTGTGGAAATGACGCGGGTTTATAATCGTTGTCGTGTATGTGCTGCTGATGTCTCtgtaaaacactgaataaaatcaGGATGG
>TU369835
TGTAGCGCAGCTTGGGCTCTGAGGTCGCGCTTCGGCTCGTGACGGCggatgaaatattaatatttaaagtgtttattgtgATAAAGAGAATAAAGTGAAGATGGTTTATCACTCTGTAGCGCTGCCGCTCATCTGCTTCACCACGCTGTGGGCTTTAGTCGGAGGCGTCGCGCCGTTTTTCGTTCCTAAAGGACCGAATAGAGGTGTGATCATTACCAGCCTGGTGCTGACGGCCGTGTGCTGCTATTTATTcTGGTTGGTTGCGTTCCTGGCGCAGGTGAACCCTCTGTTTGGACCGCAGCTGAAGAACGAGACCATCTGGTACCTGCGGTACTACTGGGAATAAAACGGAGgATTGTATCGGCTGCATGACGACGTCGTTCCATCGTTCACTTCCTGTTCGACATTCCCCTCCTGTGATGTGACTGAACGCGTTCTCTCCTCAGCGTAGCGTCAGCGCTCTTTACCTGAAACgtttaatttgtgtttgttgttttatttctgacgGAGGAGTGAAGTAaatacgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaacagtgaCAGTGTTGTGACGTGATGAAGATGTGCaatattagttaaaaaaaacctacttGAACGTTtatattatctctctctctctctttctctctctctctctctctctctctctctctctccctctctgtctctctctctctctccctctgtgtctctctctctctctctctctctgtctctgtctctgtctctgtctctctctctctctctctctctgtctctctctttctctctctctctctctctctctctctctgtctctctatgtctctctctctctctctctctctgtgtgaccAACTTGTGATGTGTTTACGTAGCggtctatttatttatgtcgAGTTTATTTATTACGTTATTTATTTTAGAGTGTAAAGCTCAGAAATGTGATCCGGTTTCAccactcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgaatgctgagagaagctgtgtgtgtcGTTCTCTAAATGATTTCATGCTGTCACGATACGATGAATCGTCCAATCCAGTATCACGATATCTGCACATCAGTTTCTGATTTCTTTTCGCTGTTTATCTCGCGCATATTAACACTAACGCTGTCTCCCTGAACactcattcattattattattgttattattgttattattattgttattattattattattacagttcaTGGATTTCAGATTGCTGTCTGTGTAAATCTGgttatttattcctttatttttacTCTTCGACGTGGCTGCTTTGTTTCCATGGAGATCCACtgacatcctctctctctctctccctttttctctctctctctctttctctctctctgtttctctctctgtttctctctctccctttctctctctttctctctctctgtctctctctctctctctttctttctgtctctctcaccagcGTGACATCAAGCTActaatgaggttttttttaacgGCTCACAGAACACTAACGTCAGTAACGTCACTGAGGAAAGTGAACTTAATTAACACTGTCGTTATTTAGAGACTTTTTGTTCAACATGATTTTCAGGGTTAAGGATTAAACTCTCGGTCTGATTGGCACTGACGGAGTTTCAGATCTCTGTGGAAATGACGCGGGTTTATAATCGTTGTCGTGTATGTGCTGCTGATGTCTCtgtaaaacactgaataaaatcaGGATGG
>TU369836
ctctctctctctctctctctctctctctctgtctctctctctctctctctctctctctctctctctctctctctctctctctctgtctctctctctctctctctctctgtctctctctctctctctctctctctctctctctgtgtgaccAACTTGTGATGTGTTTACGTAGCggtctatttatttatgtcgAGTTTATTTATTACGTTATTTATTTTAGAGTGTAAAGCTCAGAAATGTGATCCGGTTTCAccactcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgaatgctgagagaagctgtgtgtgtcGTTCTCTAAATGATTTCATGCTGTCACGATACGATGAATCGTCCAATCCAGTATCACGATATCTGCACATCAGTTTCTGATTTCTTTTCGCTGTTTATCTCGCGCATATTAACACTAACGCTGTCTCCCTGAACactcattcattattattattgttattattgttattattattgttattattattattattacagttcaTGGATTTCAGATTGCTGTCTGTGTAAATCTGgttatttattcctttatttttacTCTTCGACGTGGCTGCTTTGTTTCCATGGAGATCCACtgacatcctctctctctctctccctttttctctctctctctctttctctctctctgtttctctctctgtttctctctctccctttctctctctttctctctctctgtctctctctctctctctttctttctgtctctctcaccagcGTGACATCAAGCTActaatgaggttttttttaacgGCTCACAGAACACTAACGTCAGTAACGTCACTGAGGAAAGTGAACTTAATTAACACTGTCGTTATTTAGAGACTTTTTGTTCAACATGATTTTCAGGGTTAAGGATTAAACTCTCGGTCTGATTGGCACTGACGGAGTTTCAGATCTCTGTGGAAATGACGCGGGTTTATAATCGTTGTCGTGTATGTGCTGCTGATGTCTCtgtaaaacactgaataaaatcaGGATGG
>TU369838
TGTAGCGCAGCTTGGGCTCTGAGGTCGCGCTTCGGCTCGTGACGGCggatgaaatattaatatttaaagtgtttattgtgATAAAGAGAATAAAGTGAAGATGGTTTATCACTCTGTAGCGCTGCCGCTCATCTGCTTCACCACGCTGTGGGCTTTAGTCGGAGGCGTCGCGCCGTTTTTCGTTCCTAAAGGACCGAATAGAGGTGTGATCATTACCAGCCTGGTGCTGACGGCCGTGTGCTGCTATTTATTcTGGTTGGTTGCGTTCCTGGCGCAGGTGAACCCTCTGTTTGGACCGCAGCTGAAGAACGAGACCATCTGGTACCTGCGGTACTACTGGGAATAAAACGGAGgATTGTATCGGCTGCATGACGACGTCGTTCCATCGTTCACTTCCTGTTCGACATTCCCCTCCTGTGATGTGACTGAACGCGTTCTCTCCTCAGCGTAGCGTCAGCGCTCTTTACCTGAAACgtttaatttgtgtttgttgttttatttctgacgGAGGAGTGAAGTAaatacgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaacagtgaCAGTGTTGTGACGTGATGAAGATGTGCaatattagttaaaaaaaacctacttGAACGTTtatattatctctctctctctctttctctctctctctctctctctctctctctctctttctttctgtctctctcaccagcGTGACATCAAGCTActaatgaggttttttttaacgGCTCACAGAACACTAACGTCAGTAACGTCACTGAGGAAAGTGAACTTAATTAACACTGTCGTTATTTAGAGACTTTTTGTTCAACATGATTTTCAGGGTTAAGGATTAAACTCTCGGTCTGATTGGCACTGACGGAGTTTCAGATCTCTGTGGAAATGACGCGGGTTTATAATCGTTGTCGTGTATGTGCTGCTGATGTCTCtgtaaaacactgaataaaatcaGGATGG
>XM_026940836.2
AgacgcgcatgcgcagtgcggTGTAGCGCAGCTTGGGCTCTGAGGTCGCGCTTCGGCTCGTGACGGCggatgaaatattaatatttaaagtgtttattgtgATAAAGAGAATAAAGTGAAGATGGTTTATCACTCTGTAGCGCTGCCGCTCATCTGCTTCACCACGCTGTGGGCTTTAGTCGGAGGCGTCGCGCCGTTTTTCGTTCCTAAAGGACCGAATAGAGGTGTGATCATTACCAGCCTGGTGCTGACGGCCGTGTGCTGCTATTTATTcTGGTTGGTTGCGTTCCTGGCGCAGGTGAACCCTCTGTTTGGACCGCAGCTGAAGAACGAGACCATCTGGTACCTGCGGTACTACTGGGAATAAAACGGAGgATTGTATCGGCTGCATGACGACGTCGTTCCATCGTTCACTTCCTGTTCGACATTCCCCTCCTGTGATGTGACTGAACGCGTTCTCTCCTCAGCGTAGCGTCAGCGCTCTTTACCTGAAACgtttaatttgtgtttgttgttttatttctgacgGAGGAGTGAAGTAaatacgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaacagtgaCAGTGTTGTGACGTGATGAAGATGTGCaatattagttaaaaaaaacctacttGAACGTTtatattatctctctctctctctttctctctctctctctctctctctctctctctctccctctctgtct

Function

NR:

description
V-type proton ATPase subunit e 2-like

GO:

id name namespace
GO:0033179 proton-transporting V-type ATPase, V0 domain cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU369833 False 999 lncRNA 0.45 5 496710 501389
TU369834 False 1668 lncRNA 0.43 5 496710 501389
TU369835 True 1744 lncRNA 0.43 4 496710 501389
TU369836 False 1033 lncRNA 0.41 2 413619 501389
TU369838 False 969 lncRNA 0.45 5 496710 501389
XM_026940836.2 False 714 mRNA 0.48 4 496689 500338

Neighbor

gene id symbol gene type direction distance location
me1 me1,LOC108280372,LOC107700750,LOC107587764,LOC107704946,LOC107716854,LOC106583951 coding upstream 25272 337335 ~ 388347 (+)
dop1a dopey1,LOC107587763,LOC107704948,LOC107597122 coding upstream 141578 239278 ~ 272041 (+)
kpna5 kpna5,LOC107552832,LOC107711738 coding upstream 381764 21279 ~ 31855 (+)
rwdd1 rwdd1,LOC107587776,LOC107704860,LOC107700695 coding upstream 405284 4175 ~ 8335 (+)
LOC113543344 LOC108280269 coding downstream 4238 505627 ~ 522026 (+)
LOC113543345 LOC108280375,LOC108280376 coding downstream 44281 545670 ~ 561137 (+)
mre11a mre11a coding downstream 115329 616718 ~ 677782 (+)
LOC113543348 gpr83 coding downstream 182417 683806 ~ 694338 (+)
cbln2a cbln2a,cbln2,LOC108280218,LOC107586364,LOC107550708,LOC107686082,LOC107664049 coding downstream 222062 723451 ~ 727865 (+)
G312193 NA non-coding upstream 147082 177843 ~ 266537 (+)
G312175 NA non-coding upstream 225509 187105 ~ 188110 (+)
G312195 akirin1,LOC102785600 non-coding upstream 230577 180593 ~ 183042 (+)
G312194 NA non-coding upstream 233645 179675 ~ 179974 (+)
LOC113525279 NA non-coding upstream 249525 160505 ~ 164094 (+)
G312221 NA non-coding downstream 72852 574241 ~ 576923 (+)
G312280 NA non-coding downstream 210105 711494 ~ 712297 (+)
G312277 NA non-coding downstream 214250 715639 ~ 759328 (+)
G312283 NA non-coding downstream 238074 739463 ~ 743129 (+)
G312517 NA non-coding downstream 319873 821262 ~ 822746 (+)
snap91a snap91,LOC108280370 other upstream 94657 274822 ~ 318962 (+)
pnrc2 pnrc2 other upstream 220085 189539 ~ 193534 (+)
G312191 NA other upstream 238078 174238 ~ 175541 (+)
G312172 NA other upstream 318694 93899 ~ 94925 (+)
G312171 NA other upstream 320704 92484 ~ 92915 (+)
LOC113543349 iws1 other downstream 203389 704778 ~ 717291 (+)
jph1b jph1b,jph1,LOC108280498,LOC107550709,LOC108435725,LOC107584332,LOC107746914,LOC107686034,LOC107664083,LOC107732545 other downstream 319141 820530 ~ 847017 (+)
paxip1 paxip1,LOC106569237,LOC107550719 other downstream 627520 1128909 ~ 1147376 (+)
c21h5orf22 c20h5orf22,LOC107714825 other downstream 1464351 1965740 ~ 1977309 (+)
tgs1 tgs1 other downstream 1631761 2133150 ~ 2145237 (+)

Expression


Co-expression Network