G312277


Basic Information

Item Value
gene id G312277
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 715639 ~ 759328 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU369915
CACAAGTCAAACCTGACCAACAGCTGAGaccgttctaatacgttatcgtttctatagtaacagctccttcaccGGGACTTAAAAAAccgttaatatggtgaagttttcttgaagtaaggagacgtttatgtaacatgtatggaaggagtctccagtgtcagcgctttgtaacagtcagaggtaaagctgtaactgtaagttttcatcttcaggacagaggagtttacgcttctgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU369915 True 236 lncRNA 0.42 2 715639 759328

Neighbor

gene id symbol gene type direction distance location
LOC113543348 gpr83 coding upstream 21301 683806 ~ 694338 (+)
mre11a mre11a coding upstream 37857 616718 ~ 677782 (+)
LOC113543345 LOC108280375,LOC108280376 coding upstream 154502 545670 ~ 561137 (+)
LOC113543344 LOC108280269 coding upstream 193613 505627 ~ 522026 (+)
usp45 usp45 coding upstream 226981 457141 ~ 488658 (+)
rdh10b rdh10b,LOC108280502,LOC108435720,LOC107550714,LOC107664055 coding downstream 109393 868721 ~ 873766 (+)
tmem70 tmem70 coding downstream 138730 898058 ~ 901624 (+)
trpa1a LOC108280835,LOC108435699 coding downstream 187464 946792 ~ 965617 (+)
shhb LOC108280234 coding downstream 244581 1003909 ~ 1012192 (+)
cnpy1 cnpy1,LOC108435706 coding downstream 294540 1053868 ~ 1066467 (+)
G312280 NA non-coding upstream 3342 711494 ~ 712297 (+)
G312221 NA non-coding upstream 138716 574241 ~ 576923 (+)
G312237 NA non-coding upstream 232426 482927 ~ 483213 (+)
G312175 NA non-coding upstream 527529 187105 ~ 188110 (+)
G312195 akirin1,LOC102785600 non-coding upstream 532597 180593 ~ 183042 (+)
G312517 NA non-coding downstream 61934 821262 ~ 822746 (+)
G312509 rpl7,LOC107664057,LOC107584398 non-coding downstream 103059 862387 ~ 866721 (+)
G312531 NA non-coding downstream 116335 875663 ~ 875880 (+)
G312534 NA non-coding downstream 124076 883404 ~ 886114 (+)
G312540 NA non-coding downstream 146906 906234 ~ 906446 (+)
atpv0e2 LOC108280382,LOC100691746,LOC107588449,LOC107551367,LOC107706116 other upstream 214250 413619 ~ 501389 (+)
snap91a snap91,LOC108280370 other upstream 396677 274822 ~ 318962 (+)
pnrc2 pnrc2 other upstream 522105 189539 ~ 193534 (+)
G312191 NA other upstream 540098 174238 ~ 175541 (+)
G312172 NA other upstream 620714 93899 ~ 94925 (+)
jph1b jph1b,jph1,LOC108280498,LOC107550709,LOC108435725,LOC107584332,LOC107746914,LOC107686034,LOC107664083,LOC107732545 other downstream 61202 820530 ~ 847017 (+)
paxip1 paxip1,LOC106569237,LOC107550719 other downstream 369581 1128909 ~ 1147376 (+)
c21h5orf22 c20h5orf22,LOC107714825 other downstream 1206412 1965740 ~ 1977309 (+)
tgs1 tgs1 other downstream 1373822 2133150 ~ 2145237 (+)
G313112 zswim5 other downstream 1422651 2181979 ~ 2185677 (+)

Expression


Co-expression Network