G312534


Basic Information

Item Value
gene id G312534
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 883404 ~ 886114 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU370257
ACACGTTATCAAATTAAAAGTTACTAAACCATAAAGCCCGAGCCCAAAAAATCATACTGAAATCTctgaaatcagaaaacacacacagtcactgagCTCTGATCGAATCCAGTCCTCAGTCTTCAGCCGGGGCTTTAAACACCAGAGATTAACTACCggaaaaagaggaataaaaacagccTTCGTCACCCAGCACTGCGATATTTTACCTATTCCACGTGAAACAGCTCGAGTGCGTACACAACCTGACGTAACAGCAGAAGAGACGGATCGAGTGGTTAGTTTCATTTTACCTCCCAAACAAAGTCAGTTCTTCTTTAAAACaccatgaagaagaagaagaagaagaagaagaagaagagtgtgTTTTAGTGGCATTGAGCTGTGAGTCCTGCAGTCCTTATGATCAGgaatgttttactttgtttttatttttaaaatcgcGCCAGTTgccttctttattattttaaaacgaGAAACCTTTCTGCTCAGAAATGCTGTTTATGTAATCCGCCTCCTCCTGAATATCAGTACTGGCTATAATTTCAATAATATATCGCaaacagttgtataaatgattaTGGGAACATGTCCGGATCCAGCTGAATAAAGATTTCTACAATAAGACGCTAAAATGGAAAGTGTCTGCTTTCTAATAAATGCTGCTGATGAGCCGAGGCGTCTTGTTTTTCTGCGTAATTTTCGctacttaaaggaaaaatccaccctgaacaagtCAGTATTTATAATCAACATGCTGCAAAAGAtttattacagttacagttttttaGGTTAAACGTCTTTCATGGACATCAAGGTCGCTCTATTCTATCTCCGTTTctctacattacccacaatgccgtctGACTACGTCCTGATAGCGGtctctctacctaaagagagcgatgcagcggcgctttagtactttaatctgtccagctctctcacctcctcgtcTGTATCTCACTCTGCGCAAAGAGATccgcttccaaagcttcaactttcacgcTAATACCGCcgtcaacatcaacatcaacgcCATCGCCATCATCATCTCCGCAGATCGCTCAcatagctgcactgcattctgggataCAGCATTTGCTCCAGTGTCTTGcttcactactactactgttagcGGATTTCTCACGTATACGACgtcgctggaaaatggtgagtgagttTTATTAAACGCAAATGTGACTGCgccctgtgacatcagagcgACACACAGCAAtgacaaattagcaccagaatcgccAAACATGTcgcaaatatataaatatatatatatatatatatatatatatatatatatattcagtataaacataatgtaatgagtttcagggtggagttttacTTTAAGTTCTGCACTGGAGTTTCGATGGTCGTCGAAAACAACCTCCGAAACAATCACTTTCAGCTACAAATATAGCATTAAACAGCTGGAGGTGGGGCTTAAAGGGGCGGAGTCACAccaaaatagatagataaataaaaaaacaaacacaaaactgaGACATCAAAGCTCTCGACTGCATTCAGGATAAGAaggtaattaatttttttttttgccggaGTGAGTCGTAATTTTATCTCCCGAGCTAAAACAAAGTTTTCGTTCCGTTTTATATTTACGCACCGAGACGGACTGCCTTTACATTCCTTTAACATGCTTAAATAATTATTGCACAAAATGTCAACCTgaaaaggctttaaaaaaaaaataacaaaaacaaaaacaaacaaaacaaaaaaaacaaccacaacTACCGCTTGTCTGCTTATACTGTGATGGTGCAAGtcctgggggcggggcttattcCGAAACCGTTTCTCAACTCTTCTCGTCACCGATGAGACGCTCGACTGAAACCGAGGAGCCAACAAGGTGAGAGCTTGTGGGCGTGGTCTTTTCATTGCCATGACGACGATACGAGGAACTCGTTAGCTAAATGTAGctaaaataatttactttttaaaggCCATCGTTCGCCAAGTTAAATTTGTGATGTGAAGTCCTCAGGTATGACGATATATTTCAGACACTTCACATCTAGTTTGgaagattattattaaaaaataaatataactgtGAATTACTGGTCCGAGGAACGAACTGCACGGAAGCCAtattgctaatgctaacgctaatgctaatgcGCAGTTAGAGGTTCAGAATAATTAGCGAAATGTGATGCTTTTGTACTGTGGATGGACAACCGGGTGATAAAACGTGTCCCCAAAGCCGAACGGGTTTCTCTCTAACAGGTTGCTCGTGAGTAAACTCGCACAGTAAGCTAATCCGGAACCGGTGGAACCGCACGCCGCGTCTTTACAAGGTCTAACGGTTCCCAGAACCAGCACCGGCTCCACCGCGTCAGTGGAAAAGAGGTAAAAAGTGATCCAACGCTAATCCTGCCATTTATAAACCCTCTCCTTACGCGCATCATCCTCGCATCATCCTCGCTTCTCAACGTGCACATGTGGAGTTTTACATTCCTGGAGTTtcgtcaggtttttttttcagcctgctGAAGTGTAACGCTCCCAATACGCCGTTTCTCCAAAGAGGTCCGCTCAGTCCCGGGACTGAAGATCCGTAAAAGTGCAGGTGTACCGTCCGTGAGCCTGTTTCCAACTGGAGTACGCCAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU370257 True 2661 lncRNA 0.42 3 883404 886114

Neighbor

gene id symbol gene type direction distance location
rdh10b rdh10b,LOC108280502,LOC108435720,LOC107550714,LOC107664055 coding upstream 9638 868721 ~ 873766 (+)
cbln2a cbln2a,cbln2,LOC108280218,LOC107586364,LOC107550708,LOC107686082,LOC107664049 coding upstream 155539 723451 ~ 727865 (+)
LOC113543348 gpr83 coding upstream 189066 683806 ~ 694338 (+)
mre11a mre11a coding upstream 205622 616718 ~ 677782 (+)
LOC113543345 LOC108280375,LOC108280376 coding upstream 322267 545670 ~ 561137 (+)
tmem70 tmem70 coding downstream 11944 898058 ~ 901624 (+)
trpa1a LOC108280835,LOC108435699 coding downstream 60678 946792 ~ 965617 (+)
shhb LOC108280234 coding downstream 117795 1003909 ~ 1012192 (+)
cnpy1 cnpy1,LOC108435706 coding downstream 167754 1053868 ~ 1066467 (+)
cahz cahz coding downstream 465149 1351263 ~ 1357482 (+)
G312531 NA non-coding upstream 7524 875663 ~ 875880 (+)
G312509 rpl7,LOC107664057,LOC107584398 non-coding upstream 16683 862387 ~ 866721 (+)
G312517 NA non-coding upstream 60658 821262 ~ 822746 (+)
G312277 NA non-coding upstream 124076 715639 ~ 759328 (+)
G312283 NA non-coding upstream 140275 739463 ~ 743129 (+)
G312540 NA non-coding downstream 20120 906234 ~ 906446 (+)
LOC117599981 NA non-coding downstream 90507 976621 ~ 980051 (+)
LOC117599954 NA non-coding downstream 203744 1089858 ~ 1104324 (+)
LOC117599969 NA non-coding downstream 477262 1363376 ~ 1370691 (+)
G312877 NA non-coding downstream 636187 1522301 ~ 1522511 (+)
jph1b jph1b,jph1,LOC108280498,LOC107550709,LOC108435725,LOC107584332,LOC107746914,LOC107686034,LOC107664083,LOC107732545 other upstream 36387 820530 ~ 847017 (+)
LOC113543349 iws1 other upstream 166113 704778 ~ 717291 (+)
atpv0e2 LOC108280382,LOC100691746,LOC107588449,LOC107551367,LOC107706116 other upstream 382015 413619 ~ 501389 (+)
snap91a snap91,LOC108280370 other upstream 564442 274822 ~ 318962 (+)
pnrc2 pnrc2 other upstream 689870 189539 ~ 193534 (+)
paxip1 paxip1,LOC106569237,LOC107550719 other downstream 242795 1128909 ~ 1147376 (+)
c21h5orf22 c20h5orf22,LOC107714825 other downstream 1079626 1965740 ~ 1977309 (+)
tgs1 tgs1 other downstream 1247036 2133150 ~ 2145237 (+)
G313112 zswim5 other downstream 1295865 2181979 ~ 2185677 (+)
LOC117599997 LOC108280771,LOC108435500 other downstream 1769086 2655200 ~ 2662399 (+)

Expression


Co-expression Network