G312540


Basic Information

Item Value
gene id G312540
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 906234 ~ 906446 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU370266
CTGGCCAGTTTCAGGATCCTGAGTATTCTCATGATCCGAAATATCTGGACCACCCTGCGTACGTTCTGGAACTGGAGAACGCTCTTATTGGACTCTGTGAGAAATATGGTGATATAGTAGGGAAGTATGGCCAATAGATCGATGACATTCAGAGGGCCTTTGAAGAACTTCCACTTGTTGGGCGAAGACAGAAACCGCAGAAGGTACTCCATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU370266 True 213 lncRNA 0.47 1 906234 906446

Neighbor

gene id symbol gene type direction distance location
tmem70 tmem70 coding upstream 4610 898058 ~ 901624 (+)
rdh10b rdh10b,LOC108280502,LOC108435720,LOC107550714,LOC107664055 coding upstream 32468 868721 ~ 873766 (+)
cbln2a cbln2a,cbln2,LOC108280218,LOC107586364,LOC107550708,LOC107686082,LOC107664049 coding upstream 178369 723451 ~ 727865 (+)
LOC113543348 gpr83 coding upstream 211896 683806 ~ 694338 (+)
mre11a mre11a coding upstream 228452 616718 ~ 677782 (+)
trpa1a LOC108280835,LOC108435699 coding downstream 40346 946792 ~ 965617 (+)
shhb LOC108280234 coding downstream 97463 1003909 ~ 1012192 (+)
cnpy1 cnpy1,LOC108435706 coding downstream 147422 1053868 ~ 1066467 (+)
cahz cahz coding downstream 444817 1351263 ~ 1357482 (+)
cdh6 LOC108280858,LOC108432255,LOC107678945,LOC107667294,LOC107567409 coding downstream 981304 1887750 ~ 1935629 (+)
G312534 NA non-coding upstream 20120 883404 ~ 886114 (+)
G312531 NA non-coding upstream 30354 875663 ~ 875880 (+)
G312509 rpl7,LOC107664057,LOC107584398 non-coding upstream 39513 862387 ~ 866721 (+)
G312517 NA non-coding upstream 83488 821262 ~ 822746 (+)
G312277 NA non-coding upstream 146906 715639 ~ 759328 (+)
LOC117599981 NA non-coding downstream 70175 976621 ~ 980051 (+)
LOC117599954 NA non-coding downstream 183412 1089858 ~ 1104324 (+)
LOC117599969 NA non-coding downstream 456930 1363376 ~ 1370691 (+)
G312877 NA non-coding downstream 615855 1522301 ~ 1522511 (+)
LOC113543035 NA non-coding downstream 718117 1624563 ~ 1662193 (+)
jph1b jph1b,jph1,LOC108280498,LOC107550709,LOC108435725,LOC107584332,LOC107746914,LOC107686034,LOC107664083,LOC107732545 other upstream 59217 820530 ~ 847017 (+)
LOC113543349 iws1 other upstream 188943 704778 ~ 717291 (+)
atpv0e2 LOC108280382,LOC100691746,LOC107588449,LOC107551367,LOC107706116 other upstream 404845 413619 ~ 501389 (+)
snap91a snap91,LOC108280370 other upstream 587272 274822 ~ 318962 (+)
pnrc2 pnrc2 other upstream 712700 189539 ~ 193534 (+)
paxip1 paxip1,LOC106569237,LOC107550719 other downstream 222463 1128909 ~ 1147376 (+)
c21h5orf22 c20h5orf22,LOC107714825 other downstream 1059294 1965740 ~ 1977309 (+)
tgs1 tgs1 other downstream 1226704 2133150 ~ 2145237 (+)
G313112 zswim5 other downstream 1275533 2181979 ~ 2185677 (+)
LOC117599997 LOC108280771,LOC108435500 other downstream 1748754 2655200 ~ 2662399 (+)

Expression


Co-expression Network