LOC117599969


Basic Information

Item Value
gene id LOC117599969
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 1363376 ~ 1370691 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU370578
AGTTGCGACTCTGAACACAAATAGCCTCAGGGGATCCTGAGATGTTTATGTCTTGAACGCCCAAACCACACATCTTGTATGTCGTTCTTTAACCCTggattataataataagaagaacgTCACCAACAGTTTATTTCTGACAGACTCCTGAGTACGTGCTGTGTAATTTATCACGTGACGGTACAAACCTCGTTCCTGGGAAGAGACGCCTGGACCTGAATAACGTGTTCAaGGTGCTTTTGGTGCACGAGGTGTGGGAACGAGGAATGAGTAAACATGACTCACGTGAGGGCAGAAACATTAACTACACTCCAGATCTACGTTTCAGATCATGTGTCGGTGGATCTGGACCTGAAGAACCATCATATCGGCTTTGATCTGTCAATCAAACACAGAGTTTAAAACGGCACAGAATTCCACAGTGTCTCCTTACTTCCTTCTTTAGGTCGCTACAGAGTAATGTAAGCGTATAGCCACCaatttagcattgtgcaaattaACTGCATATCTGAATCATCACATATTTAACTACAGTAACATCTTTCGTATGTACAGTTTCATAAAATAGAAGCAAATCAGGTTATTTTAACCATTATGAAAAttaatcacattttcacatgatgAACCAAATGAATCACACGTGAAAATGAACGAATCgcatgtgaaaataagtgaatcacatttgaaaataaacgaatcacacgtgaaaattaatgaatcacatgtgaaaatgaatgaatcacatgtgaaaatgaatgaatcacatgtgaaaataaacgaatCACGTGACAATAATCGAATCACGTGAAAAAAAAAcgaatcacgtgaaaataaatgaattgtaacAATCACATGGCAATAAAAACACATGTGAAAAGTGAAAGAGGTGTGAAACACAACATGTGAAGAGTCTAAAAACCACATGTGTAAAGTAaagtgacttttctgtaagggaaaTTAAACAAATCATCTGAATTTATTCTAACATCACACTTTTACGCTTTAGAAAGAAATAACTTCATAAAAAAAGCGATTTGTCTTTAAGATTTTGCCTTTTTAGCTCTGAGATGTCCTTTTTGTCCTTATGTTTATAGATGACAGCGTGGAGACGCTTCTGTGGCTGCGGATTTagtgctaaactggtagctataaggTT
>XR_004580318.1
gtgtgttgtaaatgatattttacttcCTTACACTCTTGCTTGTAGCCATTTCTAAGCACTAATTTTTATCTAgcattagctagcattagcgtAAAACATGTTATACCACGAGAGTGAGAACAGGGACGaacttgtggatgttccacaacctTAAATATAACCATCAATGGAAAACCATACGACTTGTTgatccttaataaataaaatgttgcaATCGTTTGAAAAACTGCTGtagtctaagaggaataaaacaataaaataatcaacttcagtgtggtaagAGGAACTCTGCTTCATTACTCCAACTcattgttgattagtttcctgttaGAGCACGacatgtagtgttttattccttacttacgaCATCTCTTCTAATTGTAAATAGAACTAAAGCAGTTTTCATTTGTTATAAgctaaaatgtaaatcaaaatgactcttttaagattttattttcctGGATGCACAGTGAGTTGCTTCACTTCTAGGTTCACTCGAAGAAATCAGAAAGGTTGGAAAGTTTCCAAAATTCCAGTTTTGAGGTTCAAGGTTGGAGACAAAAGGAACTAATTACGGTTACTCCTATCTGATGTGAATGCATCATGTGAATGCAATGAATGTGTAACCTGTATGTGTGCTTGCAAGGCATTATGGGGAAGGATTGATGGCAAATAACTATCTATCATATAACTATAATTGTGTAACTATAACTAAGAATTTGTTAGAACGGATCGTGTGTCCTGTAGCATTTGGTACATTCCTAAAATGGCTACTTAAATGTTACGAACAGTATTTATACATGACGCTCAGGTTGCACTGCATGCTTACACCCATTATAGTTTCTGTTACTCCTACACAAAGTTGCGACTCTGAACACAAATAGCCTCAGGGGATCCTGAGATGTTTATGTCTTGAACGCCCAAACCACACATCTTGTATGTCGTTCTTTAACCCTggattataataataagaagaacgTCACCAACAGTTTATTTCTGACAGACTCCTGAGTACGTGCTGTGTAATTTATCACGTGACGGTACAAACCTCGTTCCTGGGAAGAGACGCCTGGACCTGAATAACGTGTTCAaGGTGCTTTTGGTGCACGAGGTGTGGGAACGAGGAATGAGTAAACATGACTCACGTGAGGGCAGAAACATTAACTACACTCCAGATCTACGTTTCAGATCATGTATGCATGTGTCGGTGGATCTGGACCTGAAGAACCATCATATCGGCTTTGATCTGTCAATCAAACACAGAGTTTAAAACGGCACAGAATTCCACAGTGTCTCCTTACTTCCTTCTTTAGGTCGCTACAGAGTAATGTAAGCGTATAGCCACCaatttagcattgtgcaaattaACTGCATATCTGAATCATCACATATTTAACTACAGTAACATCTTTCGTATGTACAGTTTCATAAAATAGAAGCAAATCAGGTTATTTTAACCATTATGAAAAttaatcacattttcacatgatgAACCAAATGAATCACACGTGAAAATGAACGAATCgcatgtgaaaataagtgaatcacatttgaaaataaacgaatcacacgtgaaaattaatgaatcacatgtgaaaatgaatgaatcacatgtgaaaatgaatgaatcacatgtgaaaataaacgaatCACGTGACAATAATCGAATCACGTGAAAAAAAAAcgaatcacgtgaaaataaatgaattgtaacAATCACATGGCAATAAAAACACATGTGAAAAGTGAAAGAGGTGTGAAACACAACATGTGAAGAGTCTAAAAACCACATGTGTAAAGTAaagtgacttttctgtaagggaaaTTAAACAAATCATCTGAATTTATTCTAACATCACACTTTTACGCTTTAGAAAGAAATAACTTCATAAAAAAAGCGATTTGTCTTTAAGATTTTGCCTTTTTAGCTCTGAGATGTCCTTTTTGTCCTTATGTTTATAGATGACAGCGTGGAGACGCTTCTGTGGCTGCGGATTTagtgctaaactggtagctataaggTTCCATTACTTTTTAGCAGCATTAGCTTCATATAGAGAAAGAGAACGACGGAATGCTTGAGATGCCGGACTGAGTGTAAATCATGTGTAGGTGGCTGGGTAATCAGGTACACTGAGTACAGCTGGGCCTCaaataaaatctgtgtgtgtatatatgtgtgtgtgtatatgtgtgtgtgtgtgtgtgtgtgtgtgtggtggagggGCACAGGGACGGATCCTTCTGAGGTACCAGGCAGCAGCTTGTACAGGTACACTGACACAGCATTAGTGAGCAgacacatgctctctctctctttctctctctctctctctctctctctcacacacacacacacacacacacacatatatatacacacacacctgtttgcAGAAGGAGGGATATTGCACTCTAACCACAAAGACACAACAACATTGAATTGAAAGATTACTAACCCACAGGGGTTagtttactctctctctctctctctctctcttctttacTTGCTTACAGGTTTTAGTCACATGATCACGGATTAGCTGTTGCACAACATGCCTTTTCACGCcattcatctcacacacacacacacacacacacacacacacgcaaatcgGAATCTAGAACGATAAGGAGAGTGACAGTTGGGTTGCTTCGTAGGACTGTGTAGCAAAGACAGAATGACTGACAGGGTGCTGCTTAAGTATCTCTCTTTacatactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcaaataAAAGGCAGGCTGACCAAATACACTGCCTAAGGGATgattagagacagagagagagagagaggaagagagacggGCAGACATAGAGTCACAGAGATATCTCCCTCTCCTCTCatcccctttctttctttctttctttctttctttccctcaccCTCTTTCTCCTGTTCTAcatttctttctccatctctttacTCTCTTtgaatctttctctctttctctctgtctctatttactccatttcatttttaatcttttttttaaatcacttttacaTCTGTTTCAGCCATCACTCTATCTTTATCCCTCACTCTTTATCCCCTTTATccctcactcctctctctctctctctctctctctctctcacacacattattgCTTTGCATTTTCCCACGGCCTCTCTCAcccttccctcttttttttctacctgtttctctctctctctctctctctctctcacacacacacacacacacacacacacacacactgcccatcACCATCCTCCTCGCTCCCTTTTCAtctttgtctcttttctcttccttgtTTGTAACGCCTCAGTGCTCATGGTTTCCATAGCAACTGCATGTTCATGGATATGGTGTAGTGAAAACTTTGGCTGATTCAGAGGCAAACGCTCTTTAATCTTTTCCCTACAGCCAATGCACAGGCAGATACACACGTGTGTTTTGTCTGGATTTCTCCACAGTCAGTTGCAAAACTTCAATTCCCAGAACTACAGAATGTTTATCTGTTGctataaaaaacacaaactggaTAAACAATCTCACTTTACATCAAGCTTTTCAGTACTGTATCACGCTATCACACAGTTtgaattctggaatctgattggtcagaaggtgttgatttattttctataacagcagctcacaggtttatattaatacacttgttctaatacgttatcgtttccatagtaacagttcatttaCAGGGGCTTGTACAATGGAcgaaaaaaatgcatgtaatcACTGacctgtgaggagacatttatttaatatttatggaaggagtctccagtgtcagctctttgtaacatgacaagctgcgttttc

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0043169 cation binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU370578 False 1156 lncRNA 0.37 3 1364236 1368869
XR_004580318.1 True 3846 lncRNA 0.39 4 1363376 1370691

Neighbor

gene id symbol gene type direction distance location
cahz cahz coding upstream 5894 1351263 ~ 1357482 (+)
cnpy1 cnpy1,LOC108435706 coding upstream 296909 1053868 ~ 1066467 (+)
shhb LOC108280234 coding upstream 351184 1003909 ~ 1012192 (+)
trpa1a LOC108280835,LOC108435699 coding upstream 397759 946792 ~ 965617 (+)
tmem70 tmem70 coding upstream 461752 898058 ~ 901624 (+)
cdh6 LOC108280858,LOC108432255,LOC107678945,LOC107667294,LOC107567409 coding downstream 517059 1887750 ~ 1935629 (+)
zgc:163121 LOC108280641,LOC108432257 coding downstream 612625 1983316 ~ 2018166 (+)
LOC113543213 rnf31,LOC108432260 coding downstream 671509 2042200 ~ 2060017 (+)
xkr4 xkr4,zgc:123035,LOC107714844,LOC107728991,LOC107674319,LOC107679338 coding downstream 698670 2069361 ~ 2116180 (+)
lyn lyn,LOC108280443,LOC103026730,LOC108432264,LOC107674289 coding downstream 776584 2147275 ~ 2168213 (+)
LOC117599954 NA non-coding upstream 259052 1089858 ~ 1104324 (+)
LOC117599981 NA non-coding upstream 383325 976621 ~ 980051 (+)
G312540 NA non-coding upstream 456930 906234 ~ 906446 (+)
G312534 NA non-coding upstream 477262 883404 ~ 886114 (+)
G312531 NA non-coding upstream 487496 875663 ~ 875880 (+)
G312877 NA non-coding downstream 151610 1522301 ~ 1522511 (+)
LOC113543035 NA non-coding downstream 253872 1624563 ~ 1662193 (+)
G313016 NA non-coding downstream 524011 1894702 ~ 1894947 (+)
G313053 NA non-coding downstream 603408 1974099 ~ 1976715 (+)
G313052 NA non-coding downstream 745633 2116324 ~ 2123434 (+)
paxip1 paxip1,LOC106569237,LOC107550719 other upstream 216000 1128909 ~ 1147376 (+)
jph1b jph1b,jph1,LOC108280498,LOC107550709,LOC108435725,LOC107584332,LOC107746914,LOC107686034,LOC107664083,LOC107732545 other upstream 516359 820530 ~ 847017 (+)
LOC113543349 iws1 other upstream 646085 704778 ~ 717291 (+)
atpv0e2 LOC108280382,LOC100691746,LOC107588449,LOC107551367,LOC107706116 other upstream 861987 413619 ~ 501389 (+)
snap91a snap91,LOC108280370 other upstream 1044414 274822 ~ 318962 (+)
c21h5orf22 c20h5orf22,LOC107714825 other downstream 595049 1965740 ~ 1977309 (+)
tgs1 tgs1 other downstream 762459 2133150 ~ 2145237 (+)
G313112 zswim5 other downstream 811288 2181979 ~ 2185677 (+)
LOC117599997 LOC108280771,LOC108435500 other downstream 1284509 2655200 ~ 2662399 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other downstream 1304590 2675281 ~ 2675848 (+)

Expression


Co-expression Network