G313052


Basic Information

Item Value
gene id G313052
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2116324 ~ 2123434 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU370833
tttttaactcatcaGGGAATATAGTTTTTTCCCTCTGTGTTGAGCAGATATCTAGTCTGCCAACACTACAGCCCATTCATATTCAGTGGAGTTACCTCCTCTACACTACTCCTTTTTGGTCATCTAAATATATTTAGTGTTGTTCAGGCCTTGAAATTATGAATCTGCCATAACGCATTGCTCATTCATGAAGCGATGGGATTTAAACCATTCTGACATAGTGACACTACCTGTCATGTTGGACAACAGGACAAACAGGTGACCCAGTCTTGTGCTGATAAAACTCgtggagacaaaaaaaactcgCCAGGGTGAGGGGTGCTGAAACCCACGAGTCGTTTGACATCAGCAAAACTCTCGTAGTGCCAAAAAAAATCCCGGTCCATACTGGAATCCATAGTGGACATGGTGGACCTGGAGTCTCTGCCAGTaactgtacattaaaaaaaacagggcagCATTTCAATCATCTACTTgaatattgtataaaaaaaagtgaatgaaagaaagcCACGAGGGACTGACCCAGGCTCAAACACACAACTTCTCTCCTGGAGAAGGAACCAGGCCAAGAAAacacttcctggcagctcgGCTCATGCTGGCTGATATGGATCTCTCaagaaacactcacacactcacatatgtgctgagaaacacacacaacacacacaacacagagcaATCCACAGCAGCCAAGCACTCGTTGGAGCCAGGATGGATTCCACCTCCAAAAGATTAAAGATACAGTGTTCTGCTTGAGTCTGTGTGAACTCGCACGAGTGTTTATGATTACGattgtgtctgtgagtgtgtgtaggtgtgtattcGCTCTGCAGTACCAGACACGGCATCCACCGGTTCACGTGCCGCGTCTACAGAAATACAACACTGTATCTTTAAATCTGCCAAACAGCTCATCTGtatatgaaaggaaaaaaaaaattggtctcTTTCAGTTGAAAGTGCTTCTTAGTGTCTTTTTATAGGAGGTCAGAAGACGGCGAAGACGCATGGGGACGCCGGGAGAGGACGCAGTACGACAAGCACAAGACTTGAGCACAGCAAAAATTGTTCCTgtactgggggaaaaaatggtacAAGTCTGAAGTTCTTGATGCAGTCCTGATGTCCTGCATTGTTAGACTCGGACAAGGGTGACTGTTGTCTTTCTTTAGACGTGTGACATgattttctttgattttataTCAGGATTTTGATGGATTTGTGTGCGCGCTAGGCATGTGCCAATATTCCCAATATTCAGTTACACactaaatacacaataaatcaCAATTTGACACATTGTGGACACAAATTTTCATCACTACCCCTGCATTCAGTTCAGATCAAGGCTGTGTGGATTGgcatcattttttcattcattcattcattcattcatcctcagtaaccactttatcctggtcagggttgtggtggatctgaagcctatccctgGAATAATaggtgtgaggcaggaaaacaccctgaatgggacaccgtTCTATCACAGGATACTATACACTCATTCACCCCTAGGGGTAATGTAGAttagccagttcacctactggcagttttgggaggtgggaggaaactggaggaaatCCAAAGAACTGCCACATGGACACTGGGAAAACAaatatgtgaaactccacacagactgtaacaatgcttcccactgcaccaccatttTTGAAGTGTTTATTCATTCAAGGTAAAAACTATTCCATTCTTATGGCCAGTCACATTCTCCATAATTTGGTTCACCAAAGGACAATTTGAAGAAAGGTTAAATGACATGGCGGATAGAAATGCTGTCCCCTCTGAAGGCCTAGTCATGAAAGTTTTTCGTCATTGAATTTCAAAAAGCAGACACACAACAcatgaatttacattttcaacCTGCACTTTTAGGGTTAATGTAGGTTTCATGAGTGCAGACCACACCCTCAACGAAATGACATGAAGCATTATAGTGGAACTGTAAATAGTGGGGAGAACTCTGAGAACTTGGGCTTTGCGCTAGATATCCACATCTACCAGAAAGTCTTCAACAAGCAGGACTTGTTGAATAGTAGGAAGAGATGGATGGTGGTGGGTGTGGAAACTTCATCActagtggaaaaaaagagaaatgggaAGTTAACAAGTTAAAAGGTGGAGCTTCAGGCTCCCAAACCTTCCCATACTGAAGGACTCTTCAGTTTGTTCCTTTggaggaacctttaaaggttctatgtactCTGTACAGCAGAGGTTAATTTTCTCACCATGGATGtatgaaatttaataaaacacttcctgacCCCACTATAAATTATTGCATAAAAAGGTAGCACCTTCAGGGGCAGGATTAGACAGTAAATACTCTAGTGCCCTGCATAAATTCAAGTTTTCCCTGCTACTGAAACACGTGCTCTAGCTTGTGGAGAGGCTAATAATTAGTTCATGATCAGGATCAGGTGTGTCTGGAGCAGGAAAATCTTGAAAAAGCCTGGAGTTGAGAACTTCAGGTATGAACTCTCTTTGTGTTTTCACTGCTTGTGGTTGTTGGCTAGCTTGGTCTGAACTGAAGCTTCTTCAGCATTGTTTCTTTCTCATCACTATGTTGATCACCACAGCTAAAATTCTAATTCAGATCTATCTTTACAAAGTGCACCAAACCATTTTTGGTGCCAATCTTCCCATTCTGATTGTGAGCAGATGCAAATTGCAAATTTCTTTTAGTTAATTAGCATGACCTGAGGAGTGCTTTTTATAATCCAGTAGCAGAGTCATGATGATGTCATAGCCTGTGCTAAAAGTCTCATCATTTTCGTATACTGTAATTTGAAAGTTTAATATCGGGCACATGCATAGTGCGCGCACCACAATTTGGTTTACGCTTGTTGTTTTGAACTGCACAATGCTTCACTATATGCCATTAACTATATGAAGGTGACTATGATAGCACATTTGATTCAATTTACAATCAAAGTTAGAGATTAGAAGTCCAGTCACATGTTTAAATGCGATGAGATGAGCTTTAAATCCAAATCCTTTCAAATCCTGCCACTAATATAAAGAATTCTGTATTGTTGAGCAATTTAGTAAGACTGTTTAGTCAAATAACGAcatgtaaattgtaaaaatattcAAAGATCCAATGCCCCCATCCCCAAACTCagttctttgtttctttgcaatcagcattttcattgtttttcattgttaccttattttttttacagtgacaGATCATTACAAAACTCTGAGCAAGACCTTAATTCAAATAACCTCTAAAAAACCTCCCTCAGAGAGACACAATATAACTACTGGAAGAATTATGAGCATTACAATGTGaagattttcacacactgaaGTATAGACACACCAAAACCTTTCACAAGAAGATTGGACATTCCTGAATCTGATTTGGATCTAACTTTATGTACTGtgtttcagtggcagagtaatcATAAAACCTTCCACACTTTTGTTTGATCAGCCAGATACGATCTGTTTTCTCAGCAATGTTGATGTTCAGGTTGTGCAACTGCTCGCTCTAGAGCTGCTGGAGCTCGCTGACCTGTTCCCGTTGACACTGTTGTTCACTGTTTGCATTTCACTGTCGTCCATCATGTCCTCATAAACAAATCTCGGGTTGGCATGTCACCCCTTAATACCTTTCTATGATGTAGTCAAATTCCAAATACTCATTCAATCACTCACAACCACTCCCAATCATTTGCATACAAATCATTTGAGTACAAATCTGAATTTGAGGATGTAGAGCACGATGTCAACTAAAAGACAACAAGAGTGATTGTGGAACTATAAAAAGTGAGAAGAACTGGACGTTCTGGATTGGAGAAGGGTTGGAGTTCTGGACGTTCTGGACGACAAGTGTGGTCTTTCTCCCAAACTTAAACTCGCTTCATTTGCACTCCATTTcttagattatttttatttctgtatatgaACCTGTGGCTTTATGAACTATATAAAGTGAGGATGTAGCGATATTGGCCTCTCATTCTGGATTGGTTTCATGTTGAATTGGATTTCACATTGATCCCTGACCCCCTGCCGTATTTTATGCTCTGAACACATGTGATGTGTTCAGAGCTCAAAGCTTTCCCTGATCTTTTTCATAACTTGGCAAGAGCAGAGCGAGTTGCTGTAAAAACAGCTGTATCAGGTATCAGTTGATAGTGGGAGctctgatattgatattgtatcATAAATTGGATTGGTGCAGTCATAACATTAGACTATGTGAGCCAGAAGATATGTTTCCAACAAAGTTCTAGAATAATCCTGAATTAAATGTTTGCTGGACGGGGTTCTGTTTTGCATTCCCACCACATTGCAGGACTTTTGGTAATCTGGTTGGTGGTTCTGTAAAACCTGCAATTGACCAATCAGCAAAGTTTACTACAGTAACCTCTGGCACCAGTAGTTCCTTGTCCACAGAAAAGTACCGAATAAAATGGTCCCTGGTTCCTCTAGTGGAAATGTTAAtaagttcctgaaaaggttgCATCAGTGCCTAGACTTAGTACAATGTATTTGCTATTAAGAAATAATGGTCATGGTCCATTATGAAGGTCAGAACACTGGcttatattattattcacaaATCCATATTACTAATCCAAAAACATTATGGTGAAAACCAACCAGGACTAAAGATAAATGGCAGAAATTAGTTAAATAAGACGCTATAATGAGGAAATGTGAAACACAGGAATCTTAGAATCAGAGTTAAGTTAAGAACCTGCAAGACTTCGCCAAGAATAAAGGCAATTAAGGAGGTGTAAATGAACAAGTTATAAAGACATTACAAGGCAAATTGGTAATAAGACAGCATTTGTCAGAATACTTTATTGATGAACTACTCGTCACCGGTTTCGCAGTATAGCTGTATGGAAGAGATCCCAAAGGGACTCTTGCGCTTTTTTAGTCAGCCCACTCTGTGGTTCtggacaggaaacaggaagaacACTCTCTAAAAAGTGGCTCCTTAGGGGATCTTTGGATGAATGACCCTTCAAGCTTTCTAAAGGTCTCTATATGAAACCCTTTGGAACCACCTGTTATGGGGTTCCACCTAGAACCTTCATGGGTTTCTTGCAAGTGACAAACCCTTTAAGGTTACCAGATGGAACCTTAGTGATGAGGGTTCTCTAAAAGTAATGCTTTAGTGCAGTtggaaaacatttcaggacTGTAGTAGTATTAAGGATTGATCTTAATTCAATAAGCTAACCTTTCCAATTACAAACAAACACTTAAAGTGTTCCTCAAAGTTTATTTGGATAGTTATGGTTCTCATCTTCCTAgggaacccttgaagaacccttttttctaagagtgtaggtATTAACTGTGTAAGTGTATGGTACCAAATTATTGGtagttattttcttcttaatacctaGGACCTGTTAGGCATTTCAAATTTAGCAAACTGCCTTTGTACTTGGTAGACTCTTAGAAAAAAtgttcttcaaaggttctttaaaggtttatcggataattaagggttcttgaCATCCTATTCGGAACCTTTTCTCATAGGGAAACACTAGActtaacttttttgtttgtaagagcgtatatatattgtaaaagtTATATGTAGTTAACTAGCAGGACGTGTGAAATCATTGCACACTTCCTACTGTATCATTGTGtttaggtttattttaataaaatatccaTTAACTaccatttctgtctctctggaAAGACTATAAATGGTAATAACCTACCTCAAGATGGTGTAGTAAACAGAGCACCTCCAACTGTTGGTCTTGGTGAATGGAGTAGATGTGTTAGATGGTCCTAAGATGGAAGTTATTAACAGAAAATAAGTGGTACCTCAAGGTTCTGTGGTAGTGCCTGGAAGGTTGAGAGAGCCACTGTTCAGGGTCATTGAGGATGGATCGTAACCCCGGATTGGATTCTGCTGCCAAATGAAATAATGTAGTGATAATGAAGATGTGGCCAGGTGGGGGTTCTCCTGTTTATACCCAACTCATTAGAAAATCCGAGCTCAAAACTGGGACTTCAGATACTTTAAACGCAACGTAGGACAGTCAGGGAGATCgcttgttcattcattcattgctTTAAATGAACTTTCATTGGCATGGTTTTTAAACTTTCCCTCCACGTTTCCCATGCCAGTGATGGTGCAAAGTTGTgcccatctctttttttttattcatttcattcgAGTTACTGTGCTTCTACTGCAGGTGGATTTTACACGTTTTTACACGTACGATTGAGCTGATTTTGCAGTCTAACAATCAAaagacatgatgatgatgatgatgatgatgatgactgttACAGCTTGTGAAAGCTTGGAACTGTTGAAAAAGTGGTGCAGAAAGTgtgattatttgctttttttactttgatatgTGTATGCAGAGTCAAAGATTCAAAGATTCGACTTAACATATATGGTCGTCCCTCACCATTAGAATTAGATaattagattaaataaaatggCATAAGGAAAAAAAGTCCATATCTTTTGGTCTAATTAGTGGTTAACACCAGAGCACTTGGAATTAGTACAAGCACAGTAGTTTGATGAATTTTGGATAGATGTGTTTGAGTTAATACAGTGTACAGATGTTCTCGGAAGCTCGCCGACAGCCGTGGCCCGCAGACGGCTGttcaactgtaaataaatgtatgcaaatgtaCATGTTTAAACGAACATTCCTTTTTTGAGTCCTGACCGTAAAAAGGGTGTATGTTGACTAGAAGGCAACGATGAAACGCCAAGAAAATGGCAGTTCCATATGGCGTAATACAGATTAAAATCTAAACTAGTGTGGTGTACTTGACGtattaaatgggaaaaaaaaatttgcaaaaaagataaaaacctGTTCATTATTGGTCTAAGTTGCATTGTGTGATGAAAGTGCTTAAAATGCATCGACTCTGTTACCtgattttattgtatattgAAGAGTAAGACAAAAAGAGcattacatttttgtatatattggatttttgtaaatttttatttgattctaATGCAACACAAAGTACCAAATTCATTTAATAAAGTACACTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU370833 True 7089 lncRNA 0.39 2 2116324 2123434

Neighbor

gene id symbol gene type direction distance location
xkr4 xkr4,zgc:123035,LOC107714844,LOC107728991,LOC107674319,LOC107679338 coding upstream 144 2069361 ~ 2116180 (+)
LOC113543213 rnf31,LOC108432260 coding upstream 56307 2042200 ~ 2060017 (+)
zgc:163121 LOC108280641,LOC108432257 coding upstream 98158 1983316 ~ 2018166 (+)
cdh6 LOC108280858,LOC108432255,LOC107678945,LOC107667294,LOC107567409 coding upstream 180695 1887750 ~ 1935629 (+)
cahz cahz coding upstream 758842 1351263 ~ 1357482 (+)
lyn lyn,LOC108280443,LOC103026730,LOC108432264,LOC107674289 coding downstream 23841 2147275 ~ 2168213 (+)
urod urod,LOC107729049,LOC107679325,LOC107714848,LOC107674254 coding downstream 45614 2169048 ~ 2176365 (+)
toe1 toe1 coding downstream 145013 2268447 ~ 2274946 (+)
tmx3a LOC108280544 coding downstream 174692 2298126 ~ 2318867 (+)
dsela dsel coding downstream 196440 2319874 ~ 2325480 (+)
G313053 NA non-coding upstream 139609 1974099 ~ 1976715 (+)
G313016 NA non-coding upstream 221377 1894702 ~ 1894947 (+)
LOC113543035 NA non-coding upstream 454131 1624563 ~ 1662193 (+)
G312877 NA non-coding upstream 593813 1522301 ~ 1522511 (+)
LOC117599969 NA non-coding upstream 745633 1363376 ~ 1370691 (+)
G313443 NA non-coding downstream 550999 2674433 ~ 2674646 (+)
LOC117599939 NA non-coding downstream 607781 2731215 ~ 2736588 (+)
G313465 NA non-coding downstream 611685 2735119 ~ 2735384 (+)
G313494 NA non-coding downstream 665808 2789242 ~ 2789496 (+)
LOC113543325 NA non-coding downstream 819053 2942487 ~ 2945207 (+)
c21h5orf22 c20h5orf22,LOC107714825 other upstream 139015 1965740 ~ 1977309 (+)
paxip1 paxip1,LOC106569237,LOC107550719 other upstream 968948 1128909 ~ 1147376 (+)
jph1b jph1b,jph1,LOC108280498,LOC107550709,LOC108435725,LOC107584332,LOC107746914,LOC107686034,LOC107664083,LOC107732545 other upstream 1269307 820530 ~ 847017 (+)
LOC113543349 iws1 other upstream 1399033 704778 ~ 717291 (+)
atpv0e2 LOC108280382,LOC100691746,LOC107588449,LOC107551367,LOC107706116 other upstream 1614935 413619 ~ 501389 (+)
tgs1 tgs1 other downstream 9716 2133150 ~ 2145237 (+)
G313112 zswim5 other downstream 58545 2181979 ~ 2185677 (+)
LOC117599997 LOC108280771,LOC108435500 other downstream 531766 2655200 ~ 2662399 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other downstream 551847 2675281 ~ 2675848 (+)
trnat-agu_12 NA other downstream 765881 2889315 ~ 2889388 (+)

Expression


Co-expression Network