G313053


Basic Information

Item Value
gene id G313053
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 1974099 ~ 1976715 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU370836
ttgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagcatgttgAGTGTTTTTAAATTGAAGCTCCTGGAATCTATTTCTGTTGGCTGAATTTGTTATCAGTGAAATATGGAAGCCAGTAAAGTCCTTGCGCTGAAGTCACATACACCTCATCCGTTACAGGAGCACtgattaaatcacacacacacacacacagaaagtttCTCAGAAAAAAGGACTTGCATGTATTTGTATCGCATTGACTTCCTGTGAACACATGAAGAAACACAGTATGTTCTCACTGAagtttaaatattgtattataaagctgtattttgtgtaaatatgtaataaagtt

Function

GO:

id name namespace
GO:0042073 intraciliary transport biological_process
GO:0031503 protein-containing complex localization biological_process
GO:0046907 intracellular transport biological_process
GO:0051649 establishment of localization in cell biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU370836 True 346 lncRNA 0.37 3 1974099 1976715

Neighbor

gene id symbol gene type direction distance location
cdh6 LOC108280858,LOC108432255,LOC107678945,LOC107667294,LOC107567409 coding upstream 38470 1887750 ~ 1935629 (+)
cahz cahz coding upstream 616617 1351263 ~ 1357482 (+)
cnpy1 cnpy1,LOC108435706 coding upstream 907632 1053868 ~ 1066467 (+)
shhb LOC108280234 coding upstream 961907 1003909 ~ 1012192 (+)
trpa1a LOC108280835,LOC108435699 coding upstream 1008482 946792 ~ 965617 (+)
zgc:163121 LOC108280641,LOC108432257 coding downstream 6601 1983316 ~ 2018166 (+)
LOC113543213 rnf31,LOC108432260 coding downstream 65485 2042200 ~ 2060017 (+)
xkr4 xkr4,zgc:123035,LOC107714844,LOC107728991,LOC107674319,LOC107679338 coding downstream 92646 2069361 ~ 2116180 (+)
lyn lyn,LOC108280443,LOC103026730,LOC108432264,LOC107674289 coding downstream 170560 2147275 ~ 2168213 (+)
urod urod,LOC107729049,LOC107679325,LOC107714848,LOC107674254 coding downstream 192333 2169048 ~ 2176365 (+)
G313016 NA non-coding upstream 79152 1894702 ~ 1894947 (+)
LOC113543035 NA non-coding upstream 311906 1624563 ~ 1662193 (+)
G312877 NA non-coding upstream 451588 1522301 ~ 1522511 (+)
LOC117599969 NA non-coding upstream 603408 1363376 ~ 1370691 (+)
LOC117599954 NA non-coding upstream 869775 1089858 ~ 1104324 (+)
G313052 NA non-coding downstream 139609 2116324 ~ 2123434 (+)
G313443 NA non-coding downstream 697718 2674433 ~ 2674646 (+)
LOC117599939 NA non-coding downstream 754500 2731215 ~ 2736588 (+)
G313465 NA non-coding downstream 758404 2735119 ~ 2735384 (+)
G313494 NA non-coding downstream 812527 2789242 ~ 2789496 (+)
paxip1 paxip1,LOC106569237,LOC107550719 other upstream 826723 1128909 ~ 1147376 (+)
jph1b jph1b,jph1,LOC108280498,LOC107550709,LOC108435725,LOC107584332,LOC107746914,LOC107686034,LOC107664083,LOC107732545 other upstream 1127082 820530 ~ 847017 (+)
LOC113543349 iws1 other upstream 1256808 704778 ~ 717291 (+)
atpv0e2 LOC108280382,LOC100691746,LOC107588449,LOC107551367,LOC107706116 other upstream 1472710 413619 ~ 501389 (+)
snap91a snap91,LOC108280370 other upstream 1655137 274822 ~ 318962 (+)
tgs1 tgs1 other downstream 156435 2133150 ~ 2145237 (+)
G313112 zswim5 other downstream 205264 2181979 ~ 2185677 (+)
LOC117599997 LOC108280771,LOC108435500 other downstream 678485 2655200 ~ 2662399 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other downstream 698566 2675281 ~ 2675848 (+)
trnat-agu_12 NA other downstream 912600 2889315 ~ 2889388 (+)

Expression


Co-expression Network