G313112 (zswim5)


Basic Information

Item Value
gene id G313112
gene name zswim5
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2181979 ~ 2185677 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU370902
CAAATCATATAAAATGGTAGTAGCATTacataaatagtaataaatttttgtttatagaCATTAGCTCAAGAGGTTGcacaaacgaaaaaaaaaacgtcgTCGAACTATACTTTTGTGGCAACAAATACTGGATACCTTTTTCATAATTCAGTAGCACGGAGAGGTGACAAACACTTTTcccttaaattaaaaatgaaagaagagaaaataaaaataaaaaaaacagaactcaAACAGTAGATGAACTAGTGAACAATCTCTACCagcgattattattattatttttttccttctaaacTCTAGGGACAGATCAGAACACTGGTACAGTCAACACATATAGACACTTAAAGAGTtatgggaaagagagagagagagagagaggaaataaaaaataaactcaaaGCCACAGgaattctgtttttttgcaATGCCGCTGGATCAGCTAGACGAGCTACTAAAGATGCTTGGATGTGTGGAGTTTGTATAAGCAAGCAGCTACGATCGTCCTGCATTTgtcaagagggaaaaaaggcaAATTCAATCCCTAAACCTGCAAAACATCTGCTTGCTCTTCCACTGATCACGGCTTGATCTGGTCCGGCTTGAAGGAGAAAGACTGTGGAAGGTAGTTATGGAACGGAACTGGAAAAAGagtgtttaaaacaaaactgaCTGAAACTGAAGTCTCCTCATATATAGCCAGAGCGGCGTCTTTCAAAAGTCTCGAGACAACATCATATCAAAACAGAGCTTTTGTCTAATTCCCTCCATAATAATACAGCCAGTGGGTTTGGactaggcatgtgctgataatcaattataaaatatatcaggATTTTCTGCAAAATAACATTGCTACATTCGCTTTTACAGCGTGAGGCAGCGTatgctttctttatttaacGGAGCATCGCATAATTCTCTTCCATGAAAGTTTGAAAAACATGGTGGACAAAATTGTCGCTCCGTCTGAGGAATAATTCTTTAGCACTGTACTGTTTTAATACAATATGCTTAAGCAAACATTGGGTTATGACGATTTAAGATCGGCACAGGCCTAGTTTATGCAGCTCGTGGCATCCTTCTGCAATCAGACTTCCTAAATCACTTTGAGAAGATAAGGcttcaaagtaaaaaaagacATACGCAAGTCACTCGAAAGGCAAAAGTCCCAAAACTGTCCGTTCCCGAAGAgggttaaagaaaaaaaaaaatcaggaagtgGTTCTGCATAGTCAGTTCAACGGCtgttcttccttttctttcttcttcccttcagtttttttacacaccatgcttctcttgcaaaaaaaaaaaaaaaaagtgtacaaaagaccaaaaaataacaagaaataaggaggaaaaaaggaacTGTTCACAGGAGCAcctgagaaatgttttttttttttttaaaaaaagtctttctgCCGTCACATTCCCAGCCCGCGACAAATTCAAGTATCcgaaaagaaaacaacaaaaaaagaaaccatacagttatcataaataattataactttACAATTTTTTGAATTGACActttcatatttacaatatcTTAAATGCTTATgctactattttttttgtttcgtttCTTTAAGTGATTCCCTGAGAACTGAGTTGAGCATCTTGTCCTTTCTCTCCAGGTTTCCTTCCGTTCGTAGCCGCCGAGTGCATTCTAAGTGTTGGGAGCCGAGCGGGCACTTGTAGGGGGATGGCTGGGGGTGGCATGTGgaagatatttttgtttttttgtttttctggtcCTCTTGCATTTTTTCAATCTCTACATATAACCAAATTTTGATTAATGCTTGGAAAATATAATTGTTAATGCAGACAAGGTGAAAGGGGAGGGAGTGAATCAAGTGCTTGTATAACAACACAACTACAGTTACTACTATTTttgtttctgattattttctttctctaagAACAACATGTCTGATAGAGTCATGTGCCAATAATTACTGCCAAACGTTACTACTTTCAAGAGGTTGCCTAAGTAGGCAGCAAATTTGGCGAAGCATTGCATGCATGATAATGCTAAGCTTTAATGGTGAATCTCTGTCTGCATAACTCTCCCCCCCTAAAAGTAAAGCCATCTTTAGAAAGATGAGGTTTTTGTTCAGATTCAGGCGGAGAAGGAAACCCCGTGCTCTTCTCAGGTATGGAGGCGTGGCTCTCAGTAACGTTCCCTTAATTCTCTTTCTTCCCAACGCGAGAAAAAGGGCAAAGACAAACCAAGAGGAGCAGACAGAGGGGAGGGTGGCGTTCACGGCTTGGCTGATTCCTGGGTTATGTAGAATTGCGTTAAGATGAGGAACACCTCGATATTTCAGCTAGCTTTTTCGCTCTACCCCCGGGAACAAGGCCTCAGCCTCATCCTGTTAAAGCTGTTCCTTAAAATACAATCGAGGTATGACTGTAACACTGTGTgcgagtgtttttttttttcggaatGACTGTTTTGAGCTTATGAGCTCTTTGccgaaaaaaaaataagaaccACCAATCACCACGATGGAAAAGGCTCAAAATACTCCGCCTATCATTTGGTTTCTCTTTATGTGCCACTTCTGCATCTGTATTAAACTAAAGCAAGCATAAGCCGAAATCAAAAGGTTGTTCTGGCCTCCACAGGTTCTAATAAATCCGTGAACGTTGGTTGTTCACTAAACGCAAACTGtatcaaactaaaaaaaataaaaataaaggataCTCGGAATATACAGGAAGAAAATAATGCCTTAAATAAACGAGGAGTGAGTGGGGAGTCCTTTATATTCTCCTCAGCCAAATCGCTCACGCACGAGCATCATGAGCTTCTTCTTGCCCTTGTAGATCTGCTTGAGGTTGTCAATAAACTGGGCGAACTGCACGTGGCCGTCGTGTGCCATCAGGAAGGTGTCACGCGCTTTGCCCAGGAATTCAATGAACTCGCCGTAGTGGCGTGGGCTGATGTGCGTGAGGCGCGAGTGTGTGGTGCTGATGTAGGCGCCGATGGCGGCGTCCAGCAGTTGGCGCAGTGGCGCCTTGTCCGTGCTCATCAGCTTGCCTGAGCTGCGGCGGCCGGGGATACCAGCCAGGCCGGGCGCAGTCACCGTGCAGCGGCGCAGGATGTCCGAGAGCACGGTGGCACAGCGCACACCCTTTACCACCAACGGCACCATGGCGCCCAGCTCGTTCTTGCCCAGCGAGTGGCTGAGAGCGCATGCCCACAGGACATCGTTGATAGCCGGATGCGTGTCCTGGTTGTACGCCAAGCTCACATGTGCCATGGCCAACGATGCCAACTTGAAGGCACGCAGTGGGTAGCCGCGGTGTTCCATGTATCGCGCGATGGTGAACAATTGCGCATGCGTCATAGCCGTTGCTGCCGCGTCCACTGCGATCTGGTAGGCCGTCTCGAAGGCCACATGCTCCTTCTCGCATAGTGTGAGTGCAGACAGTGCGCAATTGGCCGGGTCCTTCATGGCGCACTGCAGTGCGAGTGTTCGGGCGCAGCTCGCCAGTTCCTCGCGCTGCCCGTAGTCCAGGCTGAGACGCAGTGCTGTGCCGTGAGACATGACTGCTGCAGCAACAATACTCGTAGCCTCAGTgggtgtgaacagtgtgtaccAACTCTGCAGAATGCTGA

Function

symbol description
zswim5 Predicted to be part of Cul2-RING ubiquitin ligase complex. Is expressed in several structures, including axis; margin; mesoderm; nervous system; and tail bud. Orthologous to human ZSWIM5 (zinc finger SWIM-type containing 5).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU370902 True 3640 TUCP 0.43 2 2181979 2185677

Neighbor

gene id symbol gene type direction distance location
urod urod,LOC107729049,LOC107679325,LOC107714848,LOC107674254 coding upstream 5614 2169048 ~ 2176365 (+)
lyn lyn,LOC108280443,LOC103026730,LOC108432264,LOC107674289 coding upstream 13766 2147275 ~ 2168213 (+)
xkr4 xkr4,zgc:123035,LOC107714844,LOC107728991,LOC107674319,LOC107679338 coding upstream 65799 2069361 ~ 2116180 (+)
LOC113543213 rnf31,LOC108432260 coding upstream 121962 2042200 ~ 2060017 (+)
zgc:163121 LOC108280641,LOC108432257 coding upstream 163813 1983316 ~ 2018166 (+)
toe1 toe1 coding downstream 82770 2268447 ~ 2274946 (+)
tmx3a LOC108280544 coding downstream 112449 2298126 ~ 2318867 (+)
dsela dsel coding downstream 134197 2319874 ~ 2325480 (+)
trnae-cuc_41 NA coding downstream 308555 2494232 ~ 2494303 (+)
si:dkey-181m9.8 LOC108280771 coding downstream 459854 2645531 ~ 2655148 (+)
G313052 NA non-coding upstream 58545 2116324 ~ 2123434 (+)
G313053 NA non-coding upstream 205264 1974099 ~ 1976715 (+)
G313016 NA non-coding upstream 287032 1894702 ~ 1894947 (+)
LOC113543035 NA non-coding upstream 519786 1624563 ~ 1662193 (+)
G312877 NA non-coding upstream 659468 1522301 ~ 1522511 (+)
G313443 NA non-coding downstream 488756 2674433 ~ 2674646 (+)
LOC117599939 NA non-coding downstream 545538 2731215 ~ 2736588 (+)
G313465 NA non-coding downstream 549442 2735119 ~ 2735384 (+)
G313494 NA non-coding downstream 603565 2789242 ~ 2789496 (+)
LOC113543325 NA non-coding downstream 756810 2942487 ~ 2945207 (+)
tgs1 tgs1 other upstream 36742 2133150 ~ 2145237 (+)
c21h5orf22 c20h5orf22,LOC107714825 other upstream 204670 1965740 ~ 1977309 (+)
paxip1 paxip1,LOC106569237,LOC107550719 other upstream 1034603 1128909 ~ 1147376 (+)
jph1b jph1b,jph1,LOC108280498,LOC107550709,LOC108435725,LOC107584332,LOC107746914,LOC107686034,LOC107664083,LOC107732545 other upstream 1334962 820530 ~ 847017 (+)
LOC113543349 iws1 other upstream 1464688 704778 ~ 717291 (+)
LOC117599997 LOC108280771,LOC108435500 other downstream 469523 2655200 ~ 2662399 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other downstream 489604 2675281 ~ 2675848 (+)
trnat-agu_12 NA other downstream 703638 2889315 ~ 2889388 (+)
LOC113543208 LOC108280571,LOC108435486 other downstream 1237890 3423567 ~ 3489367 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other downstream 2406763 4592440 ~ 4762095 (+)

Expression


Co-expression Network