G313443


Basic Information

Item Value
gene id G313443
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2674433 ~ 2674646 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU371292
ATTTGGGCCAGGTATTATTTGTTTGAGTTAAAGTTTGACTAAATTTTAAAGGTAAATTTTGGGATTTTCAAACTGCATTTGAGTGAGGATGTATTGTTTTTACCATTattcagtcagtgtttaagcatGACTGTGTTTGGGCCTCTGTATTTGGGCCAAGTTGTGTTTTATATTGAAGTATTATGTGCTTCTGACTCACAAAGTCAGGCAAGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU371292 True 214 lncRNA 0.34 1 2674433 2674646

Neighbor

gene id symbol gene type direction distance location
si:dkey-181m9.8 LOC108280771 coding upstream 19285 2645531 ~ 2655148 (+)
trnae-cuc_41 NA coding upstream 180130 2494232 ~ 2494303 (+)
dsela dsel coding upstream 348953 2319874 ~ 2325480 (+)
tmx3a LOC108280544 coding upstream 355566 2298126 ~ 2318867 (+)
toe1 toe1 coding upstream 399487 2268447 ~ 2274946 (+)
c21h7orf25 c20h7orf25,cunh7orf25,zgc:55781 coding downstream 39793 2714439 ~ 2717698 (+)
ralab rala,ralaa,LOC107565693,LOC103042957 coding downstream 44113 2718759 ~ 2728068 (+)
plcd1b LOC108280636 coding downstream 133781 2808427 ~ 2834932 (+)
hhatla hhatl,LOC108435490,LOC103033016,LOC107688529,LOC107722653,LOC107689424 coding downstream 185639 2860285 ~ 2871256 (+)
klhl40a LOC108280764,LOC108435482,LOC103032700 coding downstream 197883 2872529 ~ 2878715 (+)
G313052 NA non-coding upstream 550999 2116324 ~ 2123434 (+)
G313053 NA non-coding upstream 697718 1974099 ~ 1976715 (+)
G313016 NA non-coding upstream 779486 1894702 ~ 1894947 (+)
LOC113543035 NA non-coding upstream 1012240 1624563 ~ 1662193 (+)
G312877 NA non-coding upstream 1151922 1522301 ~ 1522511 (+)
LOC117599939 NA non-coding downstream 56569 2731215 ~ 2736588 (+)
G313465 NA non-coding downstream 60473 2735119 ~ 2735384 (+)
G313494 NA non-coding downstream 114596 2789242 ~ 2789496 (+)
LOC113543325 NA non-coding downstream 267841 2942487 ~ 2945207 (+)
G313607 NA non-coding downstream 401403 3076049 ~ 3076370 (+)
LOC117599997 LOC108280771,LOC108435500 other upstream 12034 2655200 ~ 2662399 (+)
G313112 zswim5 other upstream 488756 2181979 ~ 2185677 (+)
tgs1 tgs1 other upstream 529196 2133150 ~ 2145237 (+)
c21h5orf22 c20h5orf22,LOC107714825 other upstream 697124 1965740 ~ 1977309 (+)
paxip1 paxip1,LOC106569237,LOC107550719 other upstream 1527057 1128909 ~ 1147376 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other downstream 635 2675281 ~ 2675848 (+)
trnat-agu_12 NA other downstream 214669 2889315 ~ 2889388 (+)
LOC113543208 LOC108280571,LOC108435486 other downstream 748921 3423567 ~ 3489367 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other downstream 1917794 4592440 ~ 4762095 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other downstream 2113202 4787848 ~ 4789835 (+)

Expression


Co-expression Network