G313445 (fbxl7,LOC108280577,LOC107689422,LOC105900492)


Basic Information

Item Value
gene id G313445
gene name fbxl7,LOC108280577,LOC107689422,LOC105900492
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2675281 ~ 2675848 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU371294
CCTCGAATACAGCCTCATTGGACACATTGTAGCAGCCGGCGAGGTCGAGGCGCCGCAGCTCGGGGCAGCACTGTGCCACCGTGTAAAGGCCACGGTCGGTAAGTCTGCGACAGCCATTCAACACCACCATCTCCACGGTTAAACATACGTTGGGTGTGTCCTGACATAGACGACGCGTAAGCACCCGCAATGCCCGGTCCACATGTGCCACATCACCCGTCAGACGCACTGTCCTCCAGAGCCGTGGGTCCCATGCCAGGTTGTACCATCGGCGGCATACGCGGGCGCAACGACACAGCTGGTTGGTGGGCAGATGGGCGAAGATCTGCAGAAAGGCGTGGTCAGGCAGCATGTCGATGGGTGCCCCCTGATGATGGTCTTTGGATTGGCACATGCCACGCTGAGGGTAAGTGAGACCAACAGTCTCAGGAGCGAAGGACAACGAGGAGCCATTGAAGAGGGCAGGTGAAGAACGAGGAAGGATGAGAGCAGGACTGGGCGTACTCAGAGTGCGCATGCTCACGTCC
>TU371295
TGAGACATCCAGGTGTTCCAGGTTAGGGCATCGTGAGACCACCTCGAATACAGCCTCATTGGACACATTGTAGCAGCCGGCGAGGTCGAGGCGCCGCAGCTCGGGGCAGCACTGTGCCACCGTGTAAAGGCCACGGTCGGTAAGTCTGCGACAGCCATTCAACACCACCATCTCCACGGTTAAACATACGTTGGGTGTGTCCTGACATAGACGACGCGTAAGCACCCGCAATGCCCGGTCCACATGTGCCACATCACCCGTCAGACGCACTGTCCTCCAGAGCCGTGGGTCCCATGCCAGGTTGTACCATCGGCGGCATACGCGGGCGCAACGACACAGCTGGTTGGTGGGCAGATGGGCGAAGATCTGCAGAAAGGCGTGGTCAGGCAGCATGTCGATGGGTGCCCCCTGATGATGGTCTTTGGATTGGCACATGCCACGCTGAGGGTAAGTGAGACCAACAGTCTCAGGAGCGAAGGACAACGAGGAGCCATTGAAGAGGGCAGGTGAAGAACGAGGAAGGATGAGAGCAGGACTGGGCGTACTCAGAGTGCGCATGCTCACGTCC

Function

symbol description
fbxl7 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm and microtubule organizing center. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human FBXL7 (F-box and leucine rich repeat protein 7).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU371294 False 527 TUCP 0.59 1 2675322 2675848
TU371295 True 568 TUCP 0.59 1 2675281 2675848

Neighbor

gene id symbol gene type direction distance location
si:dkey-181m9.8 LOC108280771 coding upstream 20133 2645531 ~ 2655148 (+)
trnae-cuc_41 NA coding upstream 180978 2494232 ~ 2494303 (+)
dsela dsel coding upstream 349801 2319874 ~ 2325480 (+)
tmx3a LOC108280544 coding upstream 356414 2298126 ~ 2318867 (+)
toe1 toe1 coding upstream 400335 2268447 ~ 2274946 (+)
c21h7orf25 c20h7orf25,cunh7orf25,zgc:55781 coding downstream 38591 2714439 ~ 2717698 (+)
ralab rala,ralaa,LOC107565693,LOC103042957 coding downstream 42911 2718759 ~ 2728068 (+)
plcd1b LOC108280636 coding downstream 132579 2808427 ~ 2834932 (+)
hhatla hhatl,LOC108435490,LOC103033016,LOC107688529,LOC107722653,LOC107689424 coding downstream 184437 2860285 ~ 2871256 (+)
klhl40a LOC108280764,LOC108435482,LOC103032700 coding downstream 196681 2872529 ~ 2878715 (+)
G313443 NA non-coding upstream 635 2674433 ~ 2674646 (+)
G313052 NA non-coding upstream 551847 2116324 ~ 2123434 (+)
G313053 NA non-coding upstream 698566 1974099 ~ 1976715 (+)
G313016 NA non-coding upstream 780334 1894702 ~ 1894947 (+)
LOC113543035 NA non-coding upstream 1013088 1624563 ~ 1662193 (+)
LOC117599939 NA non-coding downstream 55367 2731215 ~ 2736588 (+)
G313465 NA non-coding downstream 59271 2735119 ~ 2735384 (+)
G313494 NA non-coding downstream 113394 2789242 ~ 2789496 (+)
LOC113543325 NA non-coding downstream 266639 2942487 ~ 2945207 (+)
G313607 NA non-coding downstream 400201 3076049 ~ 3076370 (+)
LOC117599997 LOC108280771,LOC108435500 other upstream 12882 2655200 ~ 2662399 (+)
G313112 zswim5 other upstream 489604 2181979 ~ 2185677 (+)
tgs1 tgs1 other upstream 530044 2133150 ~ 2145237 (+)
c21h5orf22 c20h5orf22,LOC107714825 other upstream 697972 1965740 ~ 1977309 (+)
paxip1 paxip1,LOC106569237,LOC107550719 other upstream 1527905 1128909 ~ 1147376 (+)
trnat-agu_12 NA other downstream 213467 2889315 ~ 2889388 (+)
LOC113543208 LOC108280571,LOC108435486 other downstream 747719 3423567 ~ 3489367 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other downstream 1916592 4592440 ~ 4762095 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other downstream 2112000 4787848 ~ 4789835 (+)
LOC113543089 mbp other downstream 2225622 4901470 ~ 4958121 (+)

Expression


Co-expression Network