G313494


Basic Information

Item Value
gene id G313494
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 2789242 ~ 2789496 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU371354
TGTTGATGTTGGTTCTTGCagtgtgctgctagcaatgaactcctcGTGCTgaggtttaatatttaaaacaatatccTTAATAGAGAGCACAATGGTGGCTGACTTGAGCATGCAGAGCAGAGTCAGTGAGTGTACACCTTGGTGATCAAGGCGAAAGGTAGTCCTCACGTCtcggtgctcagtgctcgcagtaCTGAACTGCTCTCACGAgtgacagtttctctgcacgcTCAAGTCACTGTTCCACGTTTCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU371354 True 255 lncRNA 0.47 1 2789242 2789496

Neighbor

gene id symbol gene type direction distance location
ralab rala,ralaa,LOC107565693,LOC103042957 coding upstream 61174 2718759 ~ 2728068 (+)
c21h7orf25 c20h7orf25,cunh7orf25,zgc:55781 coding upstream 71544 2714439 ~ 2717698 (+)
si:dkey-181m9.8 LOC108280771 coding upstream 134094 2645531 ~ 2655148 (+)
trnae-cuc_41 NA coding upstream 294939 2494232 ~ 2494303 (+)
dsela dsel coding upstream 463762 2319874 ~ 2325480 (+)
plcd1b LOC108280636 coding downstream 18931 2808427 ~ 2834932 (+)
hhatla hhatl,LOC108435490,LOC103033016,LOC107688529,LOC107722653,LOC107689424 coding downstream 70789 2860285 ~ 2871256 (+)
klhl40a LOC108280764,LOC108435482,LOC103032700 coding downstream 83033 2872529 ~ 2878715 (+)
bmi1b LOC108280883,LOC103034194,LOC108444227,LOC107689401,LOC107585379 coding downstream 186150 2975646 ~ 2985302 (+)
nebl nebl,LOC107722518,LOC107718172,LOC107688530 coding downstream 224990 3014486 ~ 3019463 (+)
LOC117599939 NA non-coding upstream 52654 2731215 ~ 2736588 (+)
G313465 NA non-coding upstream 53858 2735119 ~ 2735384 (+)
G313443 NA non-coding upstream 114596 2674433 ~ 2674646 (+)
G313052 NA non-coding upstream 665808 2116324 ~ 2123434 (+)
G313053 NA non-coding upstream 812527 1974099 ~ 1976715 (+)
LOC113543325 NA non-coding downstream 152991 2942487 ~ 2945207 (+)
G313607 NA non-coding downstream 286553 3076049 ~ 3076370 (+)
G313796 NA non-coding downstream 509602 3299098 ~ 3299306 (+)
G313853 NA non-coding downstream 734813 3524309 ~ 3524518 (+)
G313949 NA non-coding downstream 983574 3773070 ~ 3819909 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other upstream 113394 2675281 ~ 2675848 (+)
LOC117599997 LOC108280771,LOC108435500 other upstream 126843 2655200 ~ 2662399 (+)
G313112 zswim5 other upstream 603565 2181979 ~ 2185677 (+)
tgs1 tgs1 other upstream 644005 2133150 ~ 2145237 (+)
c21h5orf22 c20h5orf22,LOC107714825 other upstream 811933 1965740 ~ 1977309 (+)
trnat-agu_12 NA other downstream 99819 2889315 ~ 2889388 (+)
LOC113543208 LOC108280571,LOC108435486 other downstream 634071 3423567 ~ 3489367 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other downstream 1802944 4592440 ~ 4762095 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other downstream 1998352 4787848 ~ 4789835 (+)
LOC113543089 mbp other downstream 2111974 4901470 ~ 4958121 (+)

Expression


Co-expression Network