G313796


Basic Information

Item Value
gene id G313796
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 3299098 ~ 3299306 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU371707
GCTTTGTGTAGCACAACTATTTCTCCACCTTTTCCCAAATTTACctgatataaaattaaaatattaaataatgcagGCTATTAAATAAGAACTTTTGCATTCCTACTTCAGCCCATCTGCTGTGCTGAAACCTCATGTTACACTGCAGTGCTACACTTTTCCcaactttaattaaatatattgttcTGGACAagataaatctttttttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU371707 True 209 lncRNA 0.33 1 3299098 3299306

Neighbor

gene id symbol gene type direction distance location
nrn1b LOC108280273 coding upstream 216347 3080016 ~ 3082751 (+)
nebl nebl,LOC107722518,LOC107718172,LOC107688530 coding upstream 279635 3014486 ~ 3019463 (+)
bmi1b LOC108280883,LOC103034194,LOC108444227,LOC107689401,LOC107585379 coding upstream 313796 2975646 ~ 2985302 (+)
klhl40a LOC108280764,LOC108435482,LOC103032700 coding upstream 420383 2872529 ~ 2878715 (+)
hhatla hhatl,LOC108435490,LOC103033016,LOC107688529,LOC107722653,LOC107689424 coding upstream 427842 2860285 ~ 2871256 (+)
atg5 atg5,LOC107697282 coding downstream 202761 3502067 ~ 3523213 (+)
trnas-aga_13 NA coding downstream 326110 3625416 ~ 3625497 (+)
trnas-aga_14 NA coding downstream 326654 3625960 ~ 3626030 (+)
trnas-aga_16 NA coding downstream 328726 3628032 ~ 3628113 (+)
LOC113543357 NA coding downstream 343009 3642315 ~ 3646672 (+)
G313607 NA non-coding upstream 222728 3076049 ~ 3076370 (+)
LOC113543325 NA non-coding upstream 353891 2942487 ~ 2945207 (+)
G313494 NA non-coding upstream 509602 2789242 ~ 2789496 (+)
LOC117599939 NA non-coding upstream 562510 2731215 ~ 2736588 (+)
G313465 NA non-coding upstream 563714 2735119 ~ 2735384 (+)
G313853 NA non-coding downstream 225003 3524309 ~ 3524518 (+)
G313949 NA non-coding downstream 473764 3773070 ~ 3819909 (+)
G313975 NA non-coding downstream 507842 3807148 ~ 3808690 (+)
G313990 NA non-coding downstream 546551 3845857 ~ 3846095 (+)
LOC117599982 NA non-coding downstream 588721 3888027 ~ 3895685 (+)
trnat-agu_12 NA other upstream 409710 2889315 ~ 2889388 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other upstream 623250 2675281 ~ 2675848 (+)
LOC117599997 LOC108280771,LOC108435500 other upstream 636699 2655200 ~ 2662399 (+)
G313112 zswim5 other upstream 1113421 2181979 ~ 2185677 (+)
tgs1 tgs1 other upstream 1153861 2133150 ~ 2145237 (+)
LOC113543208 LOC108280571,LOC108435486 other downstream 124261 3423567 ~ 3489367 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other downstream 1293134 4592440 ~ 4762095 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other downstream 1488542 4787848 ~ 4789835 (+)
LOC113543089 mbp other downstream 1602164 4901470 ~ 4958121 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other downstream 1788533 5087839 ~ 5091273 (+)

Expression


Co-expression Network