G313949


Basic Information

Item Value
gene id G313949
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 3773070 ~ 3819909 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU371896
aaaaaaaaaaaaaaaaaaaacttttgatCCTGTGTCATTATTACAATGAAACACTGATAGCAAAATGTTTACATCTTGAACTTTGCAATTCCAGTTAAAAAGGTTCTTGGTGCGTTGAAGTTCTTAATTCACTCGACAAAGTGTACACAGAAGAGACAGTACACTGAAGAGATTCTCAGATAATACCTTTAACTATTCAGCCTCTTGCTCTCTCTATTGACCCTTTCACCTTGATTTTGGCAGTGGAAATGTGATGTCCCGTCTCTCCGCCTCTAACTCGGTTGTGACCTTAAGAGGAAAAGACGAACAAGCCGTcgcctcaaaaaaaaaaacgaagacTGGTTTAACTACATTTTTCTCACCTTAGATCAGACTCAAATCTTATGCCTAGTGTTTGCTGCTCTACAACTAAGCCTTAAAGAAATGGAAAGGTTGAATCAAAACCGTTTAGAGATGGTCCTGTTTGTTTTGCAGAATAACAAGAAAAGAGGAAACATTCAACTGAGATGATTAAGCATAATTATAGTAATGGGTCTTAACTCTTTTCTAAGCAAACTGCATGGCTAAGagtacaatataatataatggtCCCGCATGGCATTGGcacagtaaaatacaaatatttgttATAATGAATAGTGCTCGAGTGTTAAAACGAATGGGGCAGCAATTACAAAGAGTCACGGAGGAAGAGTCATATTGTGCACTGCGACCTTTCCAATTCTTTATACTAATATTGTGTTAATATTGCACTGTGGGACTAGTAAACCAACCAGAACacagaaatctgaaaaaagTGAGCCATCTCATTATCTAATCGCGcataattacaaaatgaatcaatcaaATCAGGAATATTTCGACTTGCAGACATTGGTGCCTTATCATATGTAGTCTTGTTTAAAGAAAAGGGCAGAGCCTACacaaggagggaaaaaaaaaaaaaaaaagctagataCATGACAAAAAATTAAGGAAAACCAGGCAAATACTGAGGGCTGAAGCTGGAAAGTGAGGAATGAAGCTAAAGTGCTACCTATACCAAAAAAGCAACTTGCCCTTGTTCAGCCACCCAGCAATAATTGAAGGGGGTAAAGTGGGTAGAAAAGTGGGCTGAGGAAGggaagaggggagagagaggacagagtgGGGGTGCAGACTTTTAGAAGTTGTTGAGATCCTGCAGAGTGGCGTCCAGCGTGGCGTGGATCTTGATGTTCTCCTCTTTAGCGGTGGCGAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU371896 True 1241 lncRNA 0.39 2 3773070 3819909

Neighbor

gene id symbol gene type direction distance location
nt5c3a nt5c3a,LOC107697280,LOC107720166,LOC107581689,LOC107714420 coding upstream 110383 3647747 ~ 3662687 (+)
LOC113543357 NA coding upstream 126398 3642315 ~ 3646672 (+)
trnas-aga_16 NA coding upstream 144957 3628032 ~ 3628113 (+)
trnas-aga_14 NA coding upstream 147040 3625960 ~ 3626030 (+)
trnas-aga_13 NA coding upstream 147573 3625416 ~ 3625497 (+)
trnap-ugg_21 NA coding downstream 127026 3946935 ~ 3947006 (+)
tagln LOC108280395,LOC108424042,LOC103045968,LOC107567684 coding downstream 142846 3962755 ~ 3968351 (+)
LOC113543359 LOC108280252 coding downstream 354884 4174793 ~ 4183429 (+)
igsf10 igsf10 coding downstream 405589 4225498 ~ 4238706 (+)
p2ry12 LOC108280198 coding downstream 431961 4251870 ~ 4256834 (+)
G313853 NA non-coding upstream 248552 3524309 ~ 3524518 (+)
G313796 NA non-coding upstream 473764 3299098 ~ 3299306 (+)
G313607 NA non-coding upstream 696700 3076049 ~ 3076370 (+)
LOC113543325 NA non-coding upstream 827863 2942487 ~ 2945207 (+)
G313494 NA non-coding upstream 983574 2789242 ~ 2789496 (+)
G313990 NA non-coding downstream 25948 3845857 ~ 3846095 (+)
LOC117599982 NA non-coding downstream 68118 3888027 ~ 3895685 (+)
G314222 NA non-coding downstream 176593 3996502 ~ 4000314 (+)
G314362 LOC108280893 non-coding downstream 470345 4290254 ~ 4293729 (+)
G314364 NA non-coding downstream 474956 4294865 ~ 4295074 (+)
LOC113543208 LOC108280571,LOC108435486 other upstream 283703 3423567 ~ 3489367 (+)
trnat-agu_12 NA other upstream 883682 2889315 ~ 2889388 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other upstream 1097222 2675281 ~ 2675848 (+)
LOC117599997 LOC108280771,LOC108435500 other upstream 1110671 2655200 ~ 2662399 (+)
G313112 zswim5 other upstream 1587393 2181979 ~ 2185677 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other downstream 772531 4592440 ~ 4762095 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other downstream 967939 4787848 ~ 4789835 (+)
LOC113543089 mbp other downstream 1081561 4901470 ~ 4958121 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other downstream 1267930 5087839 ~ 5091273 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other downstream 1381112 5201021 ~ 5216591 (+)

Expression


Co-expression Network