G313975


Basic Information

Item Value
gene id G313975
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 3807148 ~ 3808690 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU371923
GCTCTTTATTGCTCCATTAACACAGGCACAGGAAAGAACATTCCGGTTTAAGATAACACATGAAGAGCAAAAGAGcatttatatttcaaaatactGGCCTTGACTCTTAGGTCTGAGCGAATGTTCAAGCCCATGTTTATCAGCTTTTCAGTTAAAATCTCTACACAGAGCTATAACTAAGGCTAAAATCTTTTTTACACTCACACTGGTCAATTCATACAATATTTCCTTCTTTATCTGTACAGAAGAAGCAATTGTCATGTCATGTGACCTTATTTGACAGCAGCTTCAGATAAACTTCATAAGTGCAGATGAATAACGAGGATGCATCGTGACAGATGTGAAGTTCACAGCAGGCTGGTGTCACAAAattacagcaaaacaaacaaacaaacaaacaaaaaaatcaaacttcACTTGCACGAGGTGCATTTATACACAGTTTAAGCGAACCGAAGATTAAATGTCCACTGCACACGGCGTGAATATCTCCCTTCGTTATCATCGTCAGTGTCACGCTGCTTGAGGGGGCGTGTCTGTTTACTACGCAGGACGTCAGTGAACCTGATATTGTGTATTTCGAATAAATTATCTTCTTATTCAAGTTAACTTAGTTCTAAAATATTTGTGTGAAGATAAAATATTCCCgttttttgtctatttacagCGCGTTCCTGCAGCGATTAATTTTTCGTCCAGACAAAAATATGCGTAAGCAGTACAATGTGAACGTACGCAACTGCGTACAGACGATGTAAAGTTGTCGTTTGTCGATTAGTCGCTGATCTCACTgacataacaaaaaataaataaaattatctcAAAGTTCTCACCGCTTGCTATCTCACAATCCATAGCGCATTTTTTATTCGCTACTCCCATTTTATTCGCTACTCCTAGTAATGCATTTGTGCACAGTGGACATGTAGCATATGGATACTGCCCCCTTGTGGACAATCTCCCACCTGTTAAATGTAAGCGAGTTACAAAAGCTGTACAGGATCCTGAATGTGCCGGTGTGCCTGTGTCCACAGGGGTGGTGCTTAAGTTGATCGTGCCAATCGTGATCAATCACAACTAGTATCATGATAGTATGACATCACAACCAAAATACACTGCAAAACTGAACACATTATTTAAGCACTACACTGagctgaaaaaatgaaaacacaagcTAGTGGTTATATGATCACAAAAACAAGCCAAACTAGAATATATATGGTATTGATATACAACCATATGAATGCTTTTTcacataatcttttttttttatcctgtaacaagccttaaaatatactttaatgaaataaaaataatctaataaaaatacaaactagaacttctgattttatatatatatatatataggagcTTTGAGGGAAAATAAGAAAGAGAACAGTGCTGAGTGAGGGATGATGGGAAGACGTCAATCGTCATCGCTGTCGCTGCCTGATTCGCTCAGCTGCAGATCGTTT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU371923 True 1475 lncRNA 0.37 2 3807148 3808690

Neighbor

gene id symbol gene type direction distance location
nt5c3a nt5c3a,LOC107697280,LOC107720166,LOC107581689,LOC107714420 coding upstream 144461 3647747 ~ 3662687 (+)
LOC113543357 NA coding upstream 160476 3642315 ~ 3646672 (+)
trnas-aga_16 NA coding upstream 179035 3628032 ~ 3628113 (+)
trnas-aga_14 NA coding upstream 181118 3625960 ~ 3626030 (+)
trnas-aga_13 NA coding upstream 181651 3625416 ~ 3625497 (+)
pmvk pmvk coding downstream 4563 3813253 ~ 3816854 (+)
trnap-ugg_21 NA coding downstream 138245 3946935 ~ 3947006 (+)
tagln LOC108280395,LOC108424042,LOC103045968,LOC107567684 coding downstream 154065 3962755 ~ 3968351 (+)
LOC113543359 LOC108280252 coding downstream 366103 4174793 ~ 4183429 (+)
igsf10 igsf10 coding downstream 416808 4225498 ~ 4238706 (+)
G313853 NA non-coding upstream 282630 3524309 ~ 3524518 (+)
G313796 NA non-coding upstream 507842 3299098 ~ 3299306 (+)
G313607 NA non-coding upstream 730778 3076049 ~ 3076370 (+)
LOC113543325 NA non-coding upstream 861941 2942487 ~ 2945207 (+)
G313494 NA non-coding upstream 1017652 2789242 ~ 2789496 (+)
G313990 NA non-coding downstream 37167 3845857 ~ 3846095 (+)
LOC117599982 NA non-coding downstream 79337 3888027 ~ 3895685 (+)
G314222 NA non-coding downstream 187812 3996502 ~ 4000314 (+)
G314362 LOC108280893 non-coding downstream 481564 4290254 ~ 4293729 (+)
G314364 NA non-coding downstream 486175 4294865 ~ 4295074 (+)
LOC113543208 LOC108280571,LOC108435486 other upstream 317781 3423567 ~ 3489367 (+)
trnat-agu_12 NA other upstream 917760 2889315 ~ 2889388 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other upstream 1131300 2675281 ~ 2675848 (+)
LOC117599997 LOC108280771,LOC108435500 other upstream 1144749 2655200 ~ 2662399 (+)
G313112 zswim5 other upstream 1621471 2181979 ~ 2185677 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other downstream 783750 4592440 ~ 4762095 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other downstream 979158 4787848 ~ 4789835 (+)
LOC113543089 mbp other downstream 1092780 4901470 ~ 4958121 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other downstream 1279149 5087839 ~ 5091273 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other downstream 1392331 5201021 ~ 5216591 (+)

Expression


Co-expression Network