G313990


Basic Information

Item Value
gene id G313990
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 3845857 ~ 3846095 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU371944
caattttcattcattttcacgtAATGTTTTTCACAATAAAttgattttcatgtgatttttcacaCATGCTTTTCTCACGATTCATTTCTTCACATGTACTGCATGTCTTTATTATTACATGTgaatatttgtgattttttacatgattaatttatttattgattttctttccACAAGATTCGTTGTtcctgtgtgattttttttttttaattcatttttcatgtgattttttaaatgac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU371944 True 239 lncRNA 0.25 1 3845857 3846095

Neighbor

gene id symbol gene type direction distance location
pmvk pmvk coding upstream 29003 3813253 ~ 3816854 (+)
nt5c3a nt5c3a,LOC107697280,LOC107720166,LOC107581689,LOC107714420 coding upstream 183170 3647747 ~ 3662687 (+)
LOC113543357 NA coding upstream 199185 3642315 ~ 3646672 (+)
trnas-aga_16 NA coding upstream 217744 3628032 ~ 3628113 (+)
trnas-aga_14 NA coding upstream 219827 3625960 ~ 3626030 (+)
trnap-ugg_21 NA coding downstream 100840 3946935 ~ 3947006 (+)
tagln LOC108280395,LOC108424042,LOC103045968,LOC107567684 coding downstream 116660 3962755 ~ 3968351 (+)
LOC113543359 LOC108280252 coding downstream 328698 4174793 ~ 4183429 (+)
igsf10 igsf10 coding downstream 379403 4225498 ~ 4238706 (+)
p2ry12 LOC108280198 coding downstream 405775 4251870 ~ 4256834 (+)
G313949 NA non-coding upstream 25948 3773070 ~ 3819909 (+)
G313975 NA non-coding upstream 37167 3807148 ~ 3808690 (+)
G313853 NA non-coding upstream 321339 3524309 ~ 3524518 (+)
G313796 NA non-coding upstream 546551 3299098 ~ 3299306 (+)
G313607 NA non-coding upstream 769487 3076049 ~ 3076370 (+)
LOC117599982 NA non-coding downstream 41932 3888027 ~ 3895685 (+)
G314222 NA non-coding downstream 150407 3996502 ~ 4000314 (+)
G314362 LOC108280893 non-coding downstream 444159 4290254 ~ 4293729 (+)
G314364 NA non-coding downstream 448770 4294865 ~ 4295074 (+)
G314402 NA non-coding downstream 533542 4379637 ~ 4384865 (+)
LOC113543208 LOC108280571,LOC108435486 other upstream 356490 3423567 ~ 3489367 (+)
trnat-agu_12 NA other upstream 956469 2889315 ~ 2889388 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other upstream 1170009 2675281 ~ 2675848 (+)
LOC117599997 LOC108280771,LOC108435500 other upstream 1183458 2655200 ~ 2662399 (+)
G313112 zswim5 other upstream 1660180 2181979 ~ 2185677 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other downstream 746345 4592440 ~ 4762095 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other downstream 941753 4787848 ~ 4789835 (+)
LOC113543089 mbp other downstream 1055375 4901470 ~ 4958121 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other downstream 1241744 5087839 ~ 5091273 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other downstream 1354926 5201021 ~ 5216591 (+)

Expression


Co-expression Network