G314362 (LOC108280893)


Basic Information

Item Value
gene id G314362
gene name LOC108280893
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 4290254 ~ 4293729 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU372364
caatttgccagcaattacattttttaataatcatagAACAGCATAttctactttttattcatttatagttacatctgtCCATGAAAAAGTAGTTCCTGTCATCATgaatcctgaagactttcctttaCCAGAAATCttactaactgttacaaagacCTGttactggagactcattccataaatgctaaataaaagtcACTTTAAAGACCTTAAAGTAGAACAATGCGGATGCCTCCACTGCCTACAGTTCTACTCCTTCTTGTTATTAATTGGTATGAttcaaatacccttaaaatatactccaaacaggaaggaagctattttAGACAACTGACCTTGCTCtgaccttgatcctgtttggaACAATTCCAAAATCCTCCATGTAAACATTCAACCACgtgttcttgagatattgtaTTATTGAGAATTTCAAgtggatagacagacaaacaacCAGAAAGACAAATGGATGGCAAAAAACTTAGATACCCAAGAAATAGGCCTGGAGTTTCTGAACATGAATGTTTGAATAGCAactctgtatgacaaacagaaagaaagctcttgaagaaaaactgtttaaGTGTTTGGATTAATTCCAAAAACTATTTCagtgtttggatcaattccaaaatctagtccATAGATCTAGTtcatcaattccaaaatctcaGGTCATCTGCCGGTTACGATgctaattccatataaatcttacaaacattcaaccactcattcttgagatatcgaGAATCAAGTTATTGAGAATCTTGGACCCTAGTGGCTgaagcataaaaaaaattcaccatagcaacaattacacattgGGCATTTATTACAGAACTGATTTACATGAATGAATAACTAGACAATATGAACTGAATTTTGAGCAGATGCCAAGATACAAGTCAACTttacattaaaggaatactcctgCATTTTTCAGTGTACTCTCTTTtcactgcatctgtagtgtatgcGTAGTTACCATGGAAAATCAGTTCAGCGTTTCCCTGTAGTGACAATACATGTTAACTTGAAACTCACTTATTAATGGaaatctaagggcagttgttgaattccGTTAAACAAACACATGTTTATGGGTTTGTCATTCAAGTATTTGTAAATGCAGCTCTACATGTATGTAATTCACACTTTCAAGGATTTTCAGAAGGAAGAATATGTGGTTATGTCTTACCAACATAGCAGTGTGGGCACATGGGTGCCACAAAACCTTCGGGAAATCGGAAGTAACTGGATTTACTTTACACTGTATTGCTCCACCACACAGAAATTGTATGAAACTCTAAAGAACAGCTTTTGAGAGAGTTTCTCTTATATCTGACTCTAACACATTTCTTGTTAGATTGCAACAGTTGTAATTGTCAAATTAGCATCAtgcagacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatactcgaCAACTGCCCTTAGATTGCTATTCTATAGGTTCAATAGGTTTTCAGTTCTTTCCTTATTACaagaaaacaaatgtaatttttagTTTGTACTAATCACTCATACAGTATAGATACAAGGACAGAGGTTATGCTGAAAAACGCTGGTGTATTCCTTTAAAACAGGGATGCCAAAGTCAATTTCTGCCTGTGCCACATCCTCATTTTGTTTTAAGGTCCATAatgtaaagttgtttttttttaaacatattatcTCTTCTATCACATACTAATAACATTACTAGGAAAAAGGAGGGATAACAGATACTAGTCACCTGTACTATGCCTAGGTGATAACATTTAATGAACTGATTAAATggtattttttatgtttaatgactgttttccaaatataaaaaatttgttaataaagcGATTTAAGAAGAACACTCACCAGATTATCTCTGCTAAGAATATACATGTCCCATTCCCCATTTCCCTTGTCTTCACAATCCATCACCTGTTTTTCAACATATAGTATGTGCAGGTTTCTACACTGGCGATGCATGTTGGGTTTTTGGAGTCAATCAGTGCATCACACTAAAGACAATCCCTGAcacatttctgaatttttttagaCATGGGTCTGGCAAGCATTAGATGCAGGACATACTGCAACTGATTTTATCCAGGGTTTCAGCACTGTGAGATGTGAGCTCATACCTGCTGTATGTGGGTAACTGGAGTGAATTCTAGACTGCGTGAAAATGTTGCGTAACAGGaggttttaatattttgcattgGTTTTTTTCATGTCTGTGCATGCTGAATGAAACAAGGCTGCAAGCCATGTTTGGCCCACAGGCCTTGAATTTGACagctttaaaatatatagaagTGAAAACGGTtacaaaaaacacttttttttgctaGAACTTTCTCTAGCTCTGAATAATGGCATCGGACTAAACTCAGAAGTGTTTTTGCTTATATGACCGCGATACTTCACAAACCTGTATCTACACATCTATattaaaaaccttttaaaacttGTAATGTGATACTTCTAAAATAGGTGTTACCAGATTTATTGTGTACTAGGGTACAAATGGCATATCTGACCAGATTGCATATATTCTGCTGCTAACACACTCTACAAAACTGGCAcactctcttcttcctcctcctctttttctctgctgATTTTGTACTACTCAGATGTGGTAGGGCAGGGGGGAGGTTGTTAATAAGCTCAAACAttgtaaatgtgcaaaatgaaaTCTCATCATATGCTGTCTTTGTGCCATTTTCAAATAAACAGGCGAAAACAGGAACTGGTGGTTCCCCTGTAGATGCCAGGTCTACATAGGCCAGGTCTGAGTACGCGCTTGGACCCTTGTAGATGACCCACGGCCCTCTCCAGCTATCCGGGTCACGGGGCCGCACGCTGAGGTACAAGCCAAGATCCCGGCGAGCCTTGGTCCAGGTTGGGTGCCCATACACCACCCATGTTGGTGTTAAAAAATTCTGGAACTGGCTTGCTGCAGTGGAAGGTGAGCAAGTAGTGGACATCATCCGCTGGACTTCACCCAGGTTGGACTTCTGGAGGAGGTGGAAAGGTGCAGGAAAGCCAATCACACTCCCATGACAGCCATTTCTAGGCTCCACAAGCTTGTGCACCAGTTGCCCTCTTTGGAAAGCAGTGCCATCTTCAAAACTGAGGGCCTGAACACGGGAGCCAAGGGTACTGCGGGCGTTACAGTAGAGCACATTGGTCCCACTCTCTTCGTCCAGTGAGACCAGCTGACACTCCAGGCATTCAGGCTCTGGCACTGTTTTGCCGAAATGCCACGTCCTGCCATGTGTATCACTGTAGAAGCAGAAGGAGTGGGGAGTGGTTTTACAGATCTTTCCGAAGCACTCCTTGCAGTCAATGTGGTAGGCGTAGGCTGGGATCAGCAGACGGCCGGATTTTAACTGGATCCCATGGCCTGGGCCGAGAGCAAAGGTAGCCCAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU372364 True 3476 lncRNA 0.39 1 4290254 4293729

Neighbor

gene id symbol gene type direction distance location
LOC113543011 LOC108280892 coding upstream 144 4283167 ~ 4290110 (+)
LOC113543038 LOC108280160,LOC108424050 coding upstream 13296 4267090 ~ 4276958 (+)
LOC113543045 LOC108280189 coding upstream 26968 4258365 ~ 4263286 (+)
p2ry12 LOC108280198 coding upstream 33420 4251870 ~ 4256834 (+)
igsf10 igsf10 coding upstream 51548 4225498 ~ 4238706 (+)
wdr53 wdr53 coding downstream 7070 4300799 ~ 4308052 (+)
LOC113543315 LOC108280769,LOC108423999 coding downstream 22014 4315743 ~ 4350544 (+)
cux1b cux1,LOC106581515,LOC105006988 coding downstream 83265 4376994 ~ 4533974 (+)
LOC113543006 sh2b2,LOC107573094 coding downstream 252406 4546135 ~ 4576648 (+)
bud23 wbscr22 coding downstream 289298 4583027 ~ 4590956 (+)
G314222 NA non-coding upstream 289940 3996502 ~ 4000314 (+)
LOC117599982 NA non-coding upstream 394569 3888027 ~ 3895685 (+)
G313990 NA non-coding upstream 444159 3845857 ~ 3846095 (+)
G313949 NA non-coding upstream 470345 3773070 ~ 3819909 (+)
G313975 NA non-coding upstream 481564 3807148 ~ 3808690 (+)
G314364 NA non-coding downstream 1136 4294865 ~ 4295074 (+)
G314402 NA non-coding downstream 85908 4379637 ~ 4384865 (+)
G314404 NA non-coding downstream 223872 4517601 ~ 4527820 (+)
G314609 NA non-coding downstream 486209 4779938 ~ 4780145 (+)
G314628 NA non-coding downstream 506923 4800652 ~ 4801103 (+)
LOC113543208 LOC108280571,LOC108435486 other upstream 800887 3423567 ~ 3489367 (+)
trnat-agu_12 NA other upstream 1400866 2889315 ~ 2889388 (+)
G313445 fbxl7,LOC108280577,LOC107689422,LOC105900492 other upstream 1614406 2675281 ~ 2675848 (+)
LOC117599997 LOC108280771,LOC108435500 other upstream 1627855 2655200 ~ 2662399 (+)
G313112 zswim5 other upstream 2104577 2181979 ~ 2185677 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other downstream 298711 4592440 ~ 4762095 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other downstream 494119 4787848 ~ 4789835 (+)
LOC113543089 mbp other downstream 607741 4901470 ~ 4958121 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other downstream 794110 5087839 ~ 5091273 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other downstream 907292 5201021 ~ 5216591 (+)

Expression


Co-expression Network