sptssb (sptssb,LOC107567691,LOC107703014,LOC107750122)


Basic Information

Item Value
gene id sptssb
gene name sptssb,LOC107567691,LOC107703014,LOC107750122
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 5087839 ~ 5091273 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU372849
GGTCCCGCTGACGTCACGCGCCGTACTGCGGCGGCAGCATCATGACCGGAGGAAGGGCAGAGACTCTGCGCCAAACTGGAGAACGGAGCgggatgtaaaagaaaacacaaccCCTGCACTGTCGTCGCggattattatatttttttggaaGGTGTTTCTGCGCAAATGAGACTCTCTGCGTGTCAGATTCACGGACCGTAAATCAGCCGCCCACGCACGCGCCCACGCACGCGCACCCACGCCCACGCACCCACGCACGCACCCACGCGCACGCAGTCACTCACTATACACAGTGCCAACCAGCATCTGGGAAGGACAAATCCAGAAGCATGGATGTGAAGAACATGCGAGAATACATGGGCTGGCTGTACTACCAGTATCTCCTCATCACGGGCATCTACGTCCTGGAACCATGGGAGAAGTCCATCTTCAATACGATCCTCTTCACCATGGTGGCCATGGTGGTCTATACTTCTTACGTCTTTGTGCCCATCCACGTGCGCCTGGCACTGGAGTTCTTCTCAGGACTGTGTGGGGAGCAGCCAGAGAGTACCGTAGCGCTTATGAACTAAAAAACTGATGGGAtatggatctttttttttttttttcgtctctTTCCTCAGGAAGATTCAGGAGtgataaaagaagaaaatgcaaTGTGAAAAGCCATGTCCAATCTATCTTCTCCTTTCCCATCTAGCCTCATAGTGACAACGTGCATGATGGTGCAGGATGGGACCCtgaatgagtgtttgtgttttgcatGACAGGACCAATCCATCACTTATGATCGTTTGCATGTGGCTGATTTGCCAGTGGTTTTACCCATTATTAATTTCTGCAATATGGCTATGAGACAAAGAGTGCACTATTTGCTCTTGTAGATGTCAGTTTCTTTTACAAACATGTCAGTCTTGTTTGAGTTCATGTTTGTATTCACATTCCCTATGCAATGAGGCTGCTCcgaatgcaaaaataatgttaactGATGTAATATTGATTGTCTTGTATGACTCCTGGTCAGTTAAATCCAACTGAGCAATAGCTGAACTTCTTCCTCGTGCTTTAATCTCTTACTGTTCAAGCATGACACAAGGTTTATGTATTACGCTCAAATGACCTGGTATGAAAAGAAAGATTCTTGGATCAGCAAACTGTCTTCCATCCTGTACTGAACAGTGCATGTGTTCACATTTAGACTGAAGGGTTATTAACACCTCGACTACCCGACACACCCTTCATTGATGCTGGGTCgttattttgtctgtatttatatgatatgtctgtatatatttatctaCAGAATACTGGAATACTGAATACTTGGCTGGTGACACAATGACAGTAACCAACCATTTTGCACACTTTTGTGCTCTTTATGCCATATACGTATTTTATGAATGTTCAATTTGGAAAtcatatt
>XM_026940920.2
GCGACAGAAAAGGCCAGGGTGGGTGTGGTGTCCGATCTAAAGTagaggagcagtgtgtgtgtgtgtgtatatgtgtgtgtgtgtgtgtatatgtgtgtgtgcacctgacATTCCCAGACCGGTGGAGCAGCTTTGGGTTTGGACAAAGCAGTGTCCCGCGATCAACTTTATCCaccaggctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgcatgtgtttatgtgtgaagGACTCGCAGAGTGCCAACCAGCATCTGGGAAGGACAAATCCAGAAGCATGGATGTGAAGAACATGCGAGAATACATGGGCTGGCTGTACTACCAGTATCTCCTCATCACGGGCATCTACGTCCTGGAACCATGGGAGAAGTCCATCTTCAATACGATCCTCTTCACCATGGTGGCCATGGTGGTCTATACTTCTTACGTCTTTGTGCCCATCCACGTGCGCCTGGCACTGGAGTTCTTCTCAGGACTGTGTGGGGAGCAGCCAGAGAGTACCGTAGCGCTTATGAACTAAAAAACTGATGGGAtatggatctttttttttttttttcgtctctTTCCTCAGGAAGATTCAGGAGtgataaaagaagaaaatgcaaTGTGAAAAGCCATGTCCAATCTATCTTCTCCTTTCCCATCTAGCCTCATAGTGACAACGTGCATGATGGTGCAGGATGGGACCCtgaatgagtgtttgtgttttgcatGACAGGACCAATCCATCACTTATGATCGTTTGCATGTGGCTGATTTGCCAGTGGTTTTACCCATTATTAATTTCTGCAATATGGCTATGAGACAAAGAGTGCACTATTTGCTCTTGTAGATGTCAGTTTCTTTTACAAACATGTCAGTCTTGTTTGAGTTCATGTTTGTATTCACATTCCCTATGCAATGAGGCTGCTCcgaatgcaaaaataatgttaactGATGTAATATTGATTGTCTTGTATGACTCCTGGTCAGTTAAATCCAACTGAGCAATAGCTGAACTTCTTCCTCGTGCTTTAATCTCTTACTGTTCAAGCATGACACAAGGTTTATGTATTACGCTCAAATGACCTGGTATGAAAAGAAAGATTCTTGGATCAGCAAACTGTCTTCCATCCTGTACTGAACAGTGCATGTGTTCACATTTAGACTGAAGGGTTATTAACACCTCGACTACCCGACACACCCTTCATTGATGCTGGGTCgttattttgtctgtatttatatgatatgtctgtatatatttatctaCAGAATACTGGAATACTGAATACTTGGCTGGTGACACAATGACAGTAACCAACCATTTTGCACACTTTTGTGCTCTTTATGCCATATACGTATTTTATGAATGTTCAATTTGGAAAtcatattgtgttttatttttgaagactatatatagaatatagagtCACAGATGTCCTGACATTTTATATGACAATTCATAGATTCTGATATGTATATGCACATGATACATTTAGTCAgtgaatgtttctttttttattacatgaaGTTGATTTTTCACAAATAAAGTAATTTTACAATATATA
>XM_026940921.2
GTGCACCATGCAGTGACGTCACGTGACGCCGACGCCGACTGCCGTCTGGCGAGTGTAGTGAAAATGCAgcaattaaaagaaagaaagaatagacagaaagaaagaaaagcaaagacaGAGCGCGCTATAGTCTCATGACCGCGGCATgtagagaggtagagagagagagagagagagagagagagagagagagagaggctaatTTGCGCAGCGCGAGAGGCGTCGGGTTTAACGGCTCGGATCGCGTGCTCGTCCGTGGCACGGTCCCGCTGACGTCACGCGCCGTACTGCGGCGGCAGCATCATGACCGGAGGAAGGGCAGAGACTCTGCGCCAAACTGGAGAACGGAGCgggatgtaaaagaaaacacaaccCCTGCACTGTCGTCGCggattattatatttttttggaaGGTGTTTCTGCGCAAATGAGACTCTCTGCGTGTCAGATTCACGGACCGTAAATCAGCCGCCCACGCACGCGCCCACGCACGCGCACCCACGCCCACGCACCCACGCACGCACCCACGCGCACGCAGTCACTCACTATACACAGTGCCAACCAGCATCTGGGAAGGACAAATCCAGAAGCATGGATGTGAAGAACATGCGAGAATACATGGGCTGGCTGTACTACCAGTATCTCCTCATCACGGGCATCTACGTCCTGGAACCATGGGAGAAGTCCATCTTCAATACGATCCTCTTCACCATGGTGGCCATGGTGGTCTATACTTCTTACGTCTTTGTGCCCATCCACGTGCGCCTGGCACTGGAGTTCTTCTCAGGACTGTGTGGGGAGCAGCCAGAGAGTACCGTAGCGCTTATGAACTAAAAAACTGATGGGAtatggatctttttttttttttttcgtctctTTCCTCAGGAAGATTCAGGAGtgataaaagaagaaaatgcaaTGTGAAAAGCCATGTCCAATCTATCTTCTCCTTTCCCATCTAGCCTCATAGTGACAACGTGCATGATGGTGCAGGATGGGACCCtgaatgagtgtttgtgttttgcatGACAGGACCAATCCATCACTTATGATCGTTTGCATGTGGCTGATTTGCCAGTGGTTTTACCCATTATTAATTTCTGCAATATGGCTATGAGACAAAGAGTGCACTATTTGCTCTTGTAGATGTCAGTTTCTTTTACAAACATGTCAGTCTTGTTTGAGTTCATGTTTGTATTCACATTCCCTATGCAATGAGGCTGCTCcgaatgcaaaaataatgttaactGATGTAATATTGATTGTCTTGTATGACTCCTGGTCAGTTAAATCCAACTGAGCAATAGCTGAACTTCTTCCTCGTGCTTTAATCTCTTACTGTTCAAGCATGACACAAGGTTTATGTATTACGCTCAAATGACCTGGTATGAAAAGAAAGATTCTTGGATCAGCAAACTGTCTTCCATCCTGTACTGAACAGTGCATGTGTTCACATTTAGACTGAAGGGTTATTAACACCTCGACTACCCGACACACCCTTCATTGATGCTGGGTCgttattttgtctgtatttatatgatatgtctgtatatatttatctaCAGAATACTGGAATACTGAATACTTGGCTGGTGACACAATGACAGTAACCAACCATTTTGCACACTTTTGTGCTCTTTATGCCATATACGTATTTTATGAATGTTCAATTTGGAAAtcatattgtgttttatttttgaagactatatatagaatatagagtCACAGATGTCCTGACATTTTATATGACAATTCATAGATTCTGATATGTATATGCACATGATACATTTAGTCAgtgaatgtttctttttttattacatgaaGTTGATTTTTCACAAATAAAGTAATTTTACAATATATA

Function

symbol description
sptssb Predicted to contribute to serine C-palmitoyltransferase activity. Predicted to be involved in ceramide biosynthetic process; endoplasmic reticulum organization; and regulation of serine C-palmitoyltransferase activity. Predicted to act upstream of or within sphingolipid biosynthetic process. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of serine C-palmitoyltransferase complex. Orthologous to human SPTSSB (serine palmitoyltransferase small subunit B).

NR:

description
PREDICTED: serine palmitoyltransferase small subunit B isoform X1

GO:

id name namespace
GO:0006665 sphingolipid metabolic process biological_process
GO:0017059 serine C-palmitoyltransferase complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004758 serine C-palmitoyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU372849 False 1423 TUCP 0.45 2 5088101 5091097
XM_026940920.2 False 1560 mRNA 0.41 2 5088400 5091273
XM_026940921.2 True 1861 mRNA 0.44 2 5087839 5091273

Neighbor

gene id symbol gene type direction distance location
LOC113543113 NA coding upstream 14700 5070618 ~ 5073139 (+)
rabgef1l LOC108280803 coding upstream 17406 5060030 ~ 5070433 (+)
LOC113543019 zadh2 coding upstream 51394 5032249 ~ 5036445 (+)
bud23 wbscr22 coding upstream 496883 4583027 ~ 4590956 (+)
LOC113543006 sh2b2,LOC107573094 coding upstream 511191 4546135 ~ 4576648 (+)
ppm1lb ppm1l,LOC107722109,LOC107681725 coding downstream 30424 5121697 ~ 5191399 (+)
LOC113543161 arl14 coding downstream 105376 5196649 ~ 5197934 (+)
trim59 trim59 coding downstream 131260 5222533 ~ 5226707 (+)
ift80 ift80 coding downstream 158195 5249468 ~ 5322606 (+)
lxn LOC108280775 coding downstream 625033 5716306 ~ 5723799 (+)
G314675 NA non-coding upstream 108873 4978021 ~ 4978966 (+)
LOC117599956 NA non-coding upstream 194561 4884210 ~ 4893278 (+)
G314636 NA non-coding upstream 241122 4846192 ~ 4846717 (+)
G314628 NA non-coding upstream 286736 4800652 ~ 4801103 (+)
G314609 NA non-coding upstream 307694 4779938 ~ 4780145 (+)
G314785 NA non-coding downstream 31425 5122698 ~ 5123402 (+)
G314800 NA non-coding downstream 129373 5220646 ~ 5221823 (+)
G314807 NA non-coding downstream 232051 5323324 ~ 5323675 (+)
LOC117599958 NA non-coding downstream 283157 5374430 ~ 5383232 (+)
G314833 NA non-coding downstream 283470 5374743 ~ 5374957 (+)
LOC113543089 mbp other upstream 129718 4901470 ~ 4958121 (+)
pou3f2b pou3f3,pou3f3a,LOC108280934,LOC105896554,LOC108266720 other upstream 298004 4787848 ~ 4789835 (+)
LOC113543063 stx1a,LOC105005600,LOC102795677 other upstream 325744 4592440 ~ 4762095 (+)
LOC113543208 LOC108280571,LOC108435486 other upstream 1598472 3423567 ~ 3489367 (+)
trnat-agu_12 NA other upstream 2198451 2889315 ~ 2889388 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other downstream 109748 5201021 ~ 5216591 (+)
trnat-agu_13 NA other downstream 128272 5219545 ~ 5219618 (+)
si:dkeyp-97b10.3 LOC108280535 other downstream 249736 5341009 ~ 5370897 (+)
shox2 shox2,LOC107720426,LOC107598669,LOC107703017,LOC107709009,LOC107661335 other downstream 803231 5894504 ~ 5901566 (+)
G315581 cldnj,LOC108280332,LOC108424024,LOC107749063,LOC107680085,LOC107551261,LOC107703975 other downstream 1135444 6226717 ~ 6227240 (+)

Expression


Co-expression Network