G314826


Basic Information

Item Value
gene id G314826
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 5395312 ~ 5396474 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU372908
CAGATCTGCCACTGGTGACTTCTTGCGGTTCTGTTTCTCCACCTCCACCTGCATCTTGGCCATGGGTTTGGCCATTGCCAGTGCCAGTTTGGCCTCGGCCTGCAGCTTCTTCTGTCTGCTCAGGAAGTCCATGTCCTCCAGTGACTCTGAGTCTTCTTCTGTGGTGTCCCGGTCTGAGTACGATGAACTCTGTTTGCTCTACAGTTGGAGGTGGGAACgatacacacttatcacttggtgaggaaaaaagagaatagATTTAATGGATGATTGGATGGTGGATAGGTAGATGGAGTTATACATGGACAGCCAGAGAACAAAGTGAGGAATGAGGGTTAATTATACATCCATTCTCTGACTATAGAAATTGCAACAGTTAGAATGCTGGCTTGGAGGCTAGTTTACAAAACTGTGCACTTTGCACATTCCACACAGCTGAGATACAGTGTGTACACAGAAATAATTTCTGATATATAAATCATTGTGTATGCACTTATCTATACAAATTCAACTTGAGACTTGGTGCATGGCTACAAGCTGCTTTTCCAAACTAGCAAATCCTAATCACTGTAAGAGCAGTGAATTGCTCTTAATCAATATTCATTGCAGctgagacagacaaacaaaacaggaaatattATATAGGAAAACATTTTTCCTACTGGTGCATCCACAAAACTTCCCCAGTCCAGTTTTTATAACCTGTTTATACTTAGTCATTTCATGCATCTTGTAACAGGATTGGATCTCAGTAAGATTTTAACTGAGTAAtttacaaaatggctgccacctGAACAATCATGATTTTTATGTGTGTAACACCTACCCAGATATAATCCTGATACAAGCTGCATTAAACAAGTGCAGTCATTTCAAAGAAATTCCTATATATTCCCTCTGTATTGCATACACACAGTTTCTAGACGAGGCCCTTGGTCCTGACTACAGAAACTGAAAACAAGTTCATCTAATTCACAAGTGCATTCGCATTGGGACATGCCGCATGACACATTTGTGTAAAATTATTCACGAGATCTAGAATATGAGGATCCTCTGAAGCCCATCTGAGGGACTGATGAAAGGAGACAGGAAACGAGAAGAGACAGGTGGCCctgaacagaattttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU372908 True 1127 lncRNA 0.41 2 5395312 5396474

Neighbor

gene id symbol gene type direction distance location
ift80 ift80 coding upstream 72706 5249468 ~ 5322606 (+)
trim59 trim59 coding upstream 168605 5222533 ~ 5226707 (+)
LOC113543161 arl14 coding upstream 197378 5196649 ~ 5197934 (+)
ppm1lb ppm1l,LOC107722109,LOC107681725 coding upstream 203913 5121697 ~ 5191399 (+)
LOC113543113 NA coding upstream 322173 5070618 ~ 5073139 (+)
lxn LOC108280775 coding downstream 319832 5716306 ~ 5723799 (+)
LOC113543227 crgm2,LOC108280851,LOC108260581,LOC108260578,LOC108260584,LOC108280748,LOC108260582,LOC108260664,LOC108260580,LOC108280755 coding downstream 385819 5782293 ~ 5783234 (+)
dock10 dock10 coding downstream 599015 5995489 ~ 6096462 (+)
LOC113543361 NA coding downstream 709528 6106002 ~ 6108369 (+)
cul3b cul3,LOC100710156,LOC104924156 coding downstream 728137 6124611 ~ 6138401 (+)
LOC117599958 NA non-coding upstream 12080 5374430 ~ 5383232 (+)
G314833 NA non-coding upstream 20355 5374743 ~ 5374957 (+)
G314807 NA non-coding upstream 71637 5323324 ~ 5323675 (+)
G314800 NA non-coding upstream 173489 5220646 ~ 5221823 (+)
G314785 NA non-coding upstream 271910 5122698 ~ 5123402 (+)
G314852 NA non-coding downstream 51979 5448453 ~ 5448652 (+)
G314868 NA non-coding downstream 79598 5476072 ~ 5476427 (+)
G314915 NA non-coding downstream 137292 5533766 ~ 5533985 (+)
G314923 NA non-coding downstream 151415 5547889 ~ 5548192 (+)
G314954 NA non-coding downstream 191228 5587702 ~ 5587919 (+)
si:dkeyp-97b10.3 LOC108280535 other upstream 24415 5341009 ~ 5370897 (+)
trnat-agu_13 NA other upstream 175694 5219545 ~ 5219618 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other upstream 178721 5201021 ~ 5216591 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other upstream 304039 5087839 ~ 5091273 (+)
LOC113543089 mbp other upstream 437191 4901470 ~ 4958121 (+)
shox2 shox2,LOC107720426,LOC107598669,LOC107703017,LOC107709009,LOC107661335 other downstream 498030 5894504 ~ 5901566 (+)
G315581 cldnj,LOC108280332,LOC108424024,LOC107749063,LOC107680085,LOC107551261,LOC107703975 other downstream 830243 6226717 ~ 6227240 (+)
LOC113543138 LOC108280551,LOC108414043,LOC105006373 other downstream 1540866 6937340 ~ 6944990 (+)
G316001 NA other downstream 1736985 7133459 ~ 7135501 (+)
crsp7 LOC108280732 other downstream 2185839 7582313 ~ 7598164 (+)

Expression


Co-expression Network